Andrew L Routh, PhD

Select Publications

• Jaworski, Elizabeth; Langsjoen, Rose M.; Mitchell, Brooke; Judy, Barbara; Newman, Patrick; Plante, Jessic A.; Plante, Kenneth S.; Miller, Aaron L.; Zhou, Yiyang; Swetnam, Daniele; Sotcheff, Stephanea; Morris, Victoria; Saada, Nehad; Machado, Rafael Rg R.; McConnell, Allan; Widen, Steven G.; Thompson, Jill; Dong, Jianli; Ren, Ping; Pyles, Rick B.; Ksiazek, Thomas G.; Menachery, Vineet D.; Weaver, S C.; Routh, Andrew L. Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants. 2021, 10.

• Sotcheff, Stephanea; Zhou, Yiyang; Yeung, Jason; Sun, Yan; Johnson, John E.; Torbett, Bruce E.; Routh, Andrew L. ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids. 2023, 12.

• Gribble, Jennifer; Stevens, Laura J.; Agostini, Maria L.; Anderson-Daniels, Jordan; Chappell, James D.; Lu, Xiaotao; Pruijssers, Andrea J.; Routh, Andrew L.; Denison, Ma R. The coronavirus proofreading exoribonuclease mediates extensive viral recombination. 2021, 17, e1009226.

• Zhou, Yiyang; Routh, Andrew Mapping RNA-capsid interactions and RNA secondary structure within virus particles using next-generation sequencing. 2020, 48, e12.

• Jaworski, Elizabeth; Routh, Andrew Parallel ClickSeq and Nanopore sequencing elucidates the rapid evolution of defective-interfering RNAs in Flock House virus. 2017, 13, e1006365.

• Routh, Andrew; Domitrovic, Tatiana; Johnson, John E. Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus. 2012, 109, 1907-12.