Center for Computational Biology and Bioinformatics
The Center for Computational Biology Bioinformatics (CCBB) provides institute-wide bioinformatics analytics for Scripps Research as well as for external collaborators. We offer scientific support to assist in the experimental design, collection, analysis, integration and dissemination of biomedical data and knowledge. Projects will often vary in time and cost depending on the scientific goals of the work and the desired level of analysis. We work with a wide range of bioinformatics analyses and support research in a cost-effective manner.
Visit individual categories under SERVICES tab below for time and cost estimates for various CCBB standard services.
Center for Computational Biology and Bioinformatics (CCBB) provides bioinformatic support to the Scripps Research community and several research organizations and biotech companies in analyzing a wide variety of sequencing projects.
Scientific Advisory Board:
- Ali Torkamani, Professor
- Andrew Su, Professor
- Chunlei Wu, Associate Professor
- Nathan Wineinger, Associate Professor
Services
Collaborations: We are open for both short-term (typically less than a month and about 10 hours of CCBB effort) and long-term collaborations with labs at Scripps Research.
Letter of Support: We are happy to provide the Letter of Support for your grants.
Grant writing: We can help write the bioinformatics related part in your grant proposal.
Custom figures for publications
For any of the above requests, please fill out the request form and provide the necessary details.
Details of projects, time frames and service fees can be discussed in a consultation meeting.
CCBB TEAM
We as a team bring in over 20 years of bioinformatic experience in the area of Next Generation Sequencing data analyses and data management. We provide top of the line QC and analyses using open-source tools and nf -core pipelines that are developed, maintained and constantly improved by a community of world class experts in the field of bioinformatics.
| Padma Natarajan Scientific Director |
Aishwarya Sundaresan Bioinformatics Analyst III |
Garrett Miller Biostatistician |
Contact Center for Computational Biology and Bioinformatics Core at ccbb.at.scripps.edu
Interested in Bioinformatics? Join Computational Biology and Bioinformatics Affinity Group (CBB) led by Scripps postdocs with the intention of providing TSRI and the larger San Diego bioinformatics community a collaborative network and relevant events. Visit CBB_Github to learn more!
Computational Biology track will be added to the Scripps Research Graduate Program this fall, 2022!
https://bioconductor.org/
https://www.nextflow.io/
https://nf-co.re/pipelines
https://www.10xgenomics.com/products
https://support.10xgenomics.com/
https://www.youtube.com/channel/UCtYLUTtgS3k1Fg4y5tAhLbw
https://www.youtube.com/hashtag/researchersatwork
https://www.ebi.ac.uk/training/live-events
TRAINING
| Training Resources |
For all general queries relating to data analysis and data distribution, please email us at ccbb.at scripps.edu .
Scripps CCBB core: SR402 A/B, fourth floor (next to the Scripps Library) in Stein Research Building
Genomics Core: Skaggs Institute For Chemical Biology building
Scripps Research: 10596 N. Torrey Pines Rd. MB-28, La Jolla, CA 92037
New per hour rate changes effective Oct 1, 2023. Consult CCBB for details