| Viruses of Cats and Humans By Jason Socrates Bardi 
                    
                    "But 
                      the Kitten, how she starts, Crouches, stretches, paws, and darts!
 First at one, and then its fellow,
 Just as light and just as yellow.
 There are many nownow one
 Now they stop and there are none."
 The 
                      Kitten and the Falling Leaves by William Wordsworth, 
                      1804.  The patient's symptoms and prognosis tell an all-too-familiar 
                    tale. The patient became infected several years before and 
                    suffered an acute illness before his immune system brought 
                    the virus under control. Then he was fine and lived without 
                    symptoms for several years, but during this time the virus 
                    was quietly weakening his immune system. 
                    Now he is not eating, losing weight, reeling from high fever, 
                    terrible diarrhea, swollen lymph nodes, and suffering from 
                    chronic opportunistic infections. The patient is in the final 
                    throes of the terrible disease that has ravaged millions worldwideacquired 
                    immune deficiency syndrome (AIDS). 
                    And though the story may sound familiar, the patient may 
                    not be. The patient in this imaginary case is a cat, suffering 
                    from the feline form of AIDS. Like the human disease, which 
                    is caused by the "lentivirus" human immunodeficiency virus 
                    (HIV), feline AIDS is caused by a lentivirus known as feline 
                    immunodeficiency virus (FIV). 
                    That two such different species as humans and cats could 
                    suffer such similar diseases is perhaps not so surprising 
                    considering the similarity between the two viruses that cause 
                    these diseases. And FIV and HIV are very similar. 
                    If you were to take an electron micrograph of human cells 
                    infected with HIV and cat cells infected with FIV and hold 
                    these two images right next to each other, you would see in 
                    both images small spiky virions with a visible pill-shaped 
                    capsid inside. They are the same size. 
                    "It is impossible to tell them apart," says Professor John 
                    Elder, who has studied FIV since the mid-1980s at The Scripps 
                    Research Institute (TSRI), where he is currently supported 
                    by the hard work of Staff Scientist Aymeric deParseval and 
                    Research Associates Ying-Chuan Lin, Udayan Chatterji, and 
                    Sohela de Rozieres. 
                    A Virus is Discovered and Isolated It was in 1986, just a few years after the initial alarms 
                    had been raised about HIV, that FIV was discovered in California. 
                    In 1986, Niels Pedersen, who is currently director of the 
                    Center for Companion Animal Health at the University of California, 
                    Davis, and Janet Yamamoto, who is now a professor in the University 
                    of Florida's College of Veterinary Medicine, co-discovered 
                    FIV. 
                    As the story goes, there was a kindly woman who took in 
                    straysmany strayshousing them in her large kennels. 
                    She noticed an odd thing. Several cats under her care became 
                    sick and eventually died seemingly as a result of sleeping 
                    in the same pen as one particular feral cat. So she contacted 
                    Pedersen, who took samples and eventually isolated a virion, 
                    which under the electron microscope looked like an RNA virus 
                    belonging to the lentivirus family. 
                    Shortly thereafter, Elder began to collaborate with the 
                    Pedersen laboratory to work on the virus taken from that isolate 
                    and from another isolate from a cat belonging to former TSRI 
                    investigators Fred Hefron and Maggie So. 
                    "They had a cat that came down with FIV, and we isolated 
                    the virus from it," says Elder. 
                    Elder had been working at TSRI since the mid-1970s, and 
                    he was considered an expert in retroviruses like the newly 
                    discovered FIV. In fact, Elder and his laboratory had been 
                    working on retroviruses for 10 years by the time FIV was discovered 
                    in 1986. 
                    "It was a natural progression for us to take our molecular 
                    tricks over there and try to find out what the structure of 
                    that virus was," says Elder. 
                    The tricks Elder and his laboratory employed were basically 
                    those of molecular cloningthey were experts at isolating 
                    and amplifying the DNA of the virus so that it and its proteins 
                    could be studied. Basically, what this entailed was to extract 
                    the DNA from infected blood lymphocytes, chop it up with enzymes, 
                    insert the DNA pieces into phage (a virus that infects bacteria), 
                    and then infect bacteria with the phage. 
                    Bacteria can easily be grown, providing a convenient way 
                    of amplifying the DNA. Elder and his laboratory then had only 
                    to look for the right pieces of DNA by labeling them with 
                    radioactive probes and separating them. 
                    "We found one [piece] that contained what looked to be the 
                    whole virus," says Elder. 
                    Then they took that piece of DNA and used it to transfect 
                    cells. They then observed those cells and found that they 
                    were productively replicating the virus, which they then isolated 
                    so that they could sequence it. Elder and his colleagues also 
                    made expression systems with many of the viral proteins so 
                    that they could be produced and purified for biochemical studies 
                    and other research. 
                    Two Very Similar Viruses Building on this initial work, Elder and his colleagues 
                    at TSRI and elsewhere have been able to characterize the genomic 
                    organization of FIV and, significantly, to compare it to that 
                    of its cousin HIV. FIV and HIV, it turned out, have a lot 
                    in common, which makes FIV a good model for studying an HIV-type 
                    infection. 
                    The similarities between the two viruses go deeper than 
                    morphology. FIV, as a disease, represents as serious an epidemic 
                    for the wild and domestic cat populations in the world as 
                    HIV does for the human populations of the world. 
                    Both are members of the lenti (slow) virus family and they 
                    contain many of the same characteristic genes and proteins. 
                    FIV, much like its human cousin HIV, has an RNA genome of 
                    around 10,000 bases that is packaged in a protein and lipid 
                    capsid and coat. HIV and FIV both code for a number of structural 
                    genes, which encapsulate the RNA and are produced by a gene 
                    called gag. In an infected cell, the virus produces 
                    a large Gag polyprotein that is later chopped up into its 
                    constituent pieces by an important viral enzyme called the 
                    protease. 
                    The protease and a few other necessary enzymes are encoded 
                    by a viral pol gene. And HIV and FIV also encode env 
                    genes, which makes a glycoprotein that sticks up out of the 
                    coat of the virion and helps the virus infect cells. 
                    At the amino acid level, Elder estimates, about 40 to 45 
                    percent of the residues in FIV proteins are identical to those 
                    in HIV. "We found," says Elder, "[that the FIV and HIV sequences] 
                    were quite related." 
                    In fact, he adds, some of the proteins are so similar that 
                    they have almost identical structures. Elder and his colleagues 
                    hope that their discoveries and successes in their research 
                    on FIV will shed light on the problem of HIV. 
                    "One very big parallel [between the two]," says Eder, "is 
                    that FIV uses the chemokine receptor CXCR4, like many strains 
                    of HIV." 
                    Much like HIV, FIV requires the interaction of its surface 
                    glycoprotein molecules with CXCR4. And, also like HIV, FIV 
                    requires another receptor to maximize binding to the chemokine 
                    receptor. In HIV, the required receptor is called CD4. The 
                    exact receptor needed by FIV is, at the moment, not known. 
                    "We're trying to figure out what it is," says Elder. 
                     
                    
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