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Scripps Research Institute Chemists Achieve New Technique with Profound Implications for Drug Development

Method Expands Options for Making Pure Batches of ‘One-Handed’ Molecules

LA JOLLA, CA – October 23, 2014 – Breaking carbon-hydrogen (C-H) bonds to alter existing molecules to create new ones is an increasingly important avenue for drug development. Of particular interest is mirror-image or “one-handed” compounds, but C-H breaking methods for making pure batches of these molecules have worked with only a limited range of starting materials.

Now a team from The Scripps Research Institute (TSRI) has established a new C-H activation technique that opens the door to creating a broader range of pure molecules of one-handedness or “chirality” by eliminating previous starting-material limitations.

“This opens a new avenue to create chirally pure molecules for drug discovery,” said Jin-Quan Yu, who is Frank and Bertha Hupp Professor of Chemistry at TSRI. “The potential may be huge.”

In the new study, which was published in the October 24, 2014 issue of the journal Science, the scientists worked with chiral amines, a class of chemical compounds that include some of the most potent and successful pharmaceuticals, including the antidepressant Zoloft and codeine. However, the same methods should also apply to other chemical classes.

The reactions involved all occur at room temperature with cheap, readily available constituents—all attractive features when looking ahead to the possibility of manufacturing new pharmaceuticals based on the technique.

Manipulating Mirror Images

The new research centers on the synthesis of chiral molecules—mirror images of each other, called enantiomers, that often possess different biological activities.

One example of this is thalidomide. Thalidomide, which was given to pregnant women as a sedative and anti-nausea drug in the 1950s in Europe, turned out to produce debilitating birth defects such as missing limbs. But, in fact, only one enantiomer of the molecule is responsible for these effects. Enantiomers are typically produced at similar rates, making mixtures that can be difficult to separate.

In recent years Yu’s group has published vastly improved methods for breaking C-H bonds, also known as C-H activation. The resulting removal of a hydrogen atom creates an ideal reactive site for adding new functional pieces to a molecule. However, Yu was not satisfied with the ability of these methods to create chirally pure molecules.

In C-H activation reactions, much recent work to create chirally pure batches of molecules has relied on a process called “desymmetrization.” However, a limitation of this process has been that the starting material needs to have two symmetric C-H bonds attached to two identical aryls or alkyls, called prochiral C-H bonds.

Breaking Good

The new method uses the metal palladium, combined with an amino acid, as a catalyst capable of breaking C-H bonds. The trick is the ability of the amino acid ligand bound to the palladium catalyst to select which mirror-image enantiomer of the starting material to react with. Once the palladium breaks the C-H bonds of the desired chiral molecules to create a new open spot, iodine will bond to replace the removed hydrogen.

“That iodine is the magic, it can be replaced with anything as medicinal chemists wish,” Yu said. “That’s the beauty.”

In developing the method, Yu and his team took lessons from past work and tested a variety of catalysts until they identified a benzoyl-protected L-leucine as a ligand that guides the palladium catalyst to react preferentially with only one of the two mirror-image enantiomers in the starting amine mixture. This produces a mixture where almost all of one enantiomer is iodinated, while the other remains unchanged, and iodinated molecules are easily separated from others. This type of preferential production of one enantiomer over another is known as kinetic resolution.

The team has already created a variety of chiral amines using the new technique to demonstrate its potential, and the researchers are planning to apply variations on their technique to other classes of compounds.

The group’s focus is on basic chemistry, but Yu says it will be relatively simple for other chemists to further modify such new molecules and countless more to test for pharmaceutical potential. 

“Someone could develop this further and do amazing things,” said Yu.

In addition to Yu, other authors of this study, “Room-temperature enantioselective C-H iodination via kinetic resolution,” were first author TSRI graduate student Ling Chu and TSRI Research Associate Kai-Jiong Xiao.

Support for this study came from TSRI and the National Institutes of Health (2R01GM084019).

About The Scripps Research Institute

The Scripps Research Institute (TSRI) is one of the world's largest independent, not-for-profit organizations focusing on research in the biomedical sciences. TSRI is internationally recognized for its contributions to science and health, including its role in laying the foundation for new treatments for cancer, rheumatoid arthritis, hemophilia, and other diseases. An institution that evolved from the Scripps Metabolic Clinic founded by philanthropist Ellen Browning Scripps in 1924, the institute now employs more than 2,500 people on its campuses in La Jolla, CA, and Jupiter, FL, where its renowned scientists—including two Nobel laureates and 20 members of the National Academy of Science, Engineering or Medicine—work toward their next discoveries. The institute's graduate program, which awards PhD degrees in biology and chemistry, ranks among the top ten of its kind in the nation. For more information, see

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– For a high-resolution image see:

Authors of the new Science paper are (left to right) Kai-Jiong Xiao, Ling Chu and Jin-Quan Yu. (Photo by Cindy Brauer.)
– For a high-resolution image see: