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ZF Tools home News Intro to ZFPs Tools overview DNA search tips ZFP design tips Available triplets Synthesize a ZFP Effector domains Nuclease design Citations About Send feedback Sign in E-mail Password Register Forgot/Change Your Password			Search DNA Sequence for Contiguous or Separated Target Sites Enter a DNA sequence to be scanned for target sites (10 kb max). Triplets to search GNG GN(ACT) ANN CNN TNN ZF set Total 23-21-19 Search both strands   Contiguous targets   Separated targets Minimum target size (bp) 6 9 12 15 18 21 24 Half-site size (bp) 3 6 9 12 15 18 Core (IUPAC bases or number of bp)  or  Enzyme site AatII AclI AfeI AflII AgeI ApaI ApaLI AseI AvrII BamHI BclI BfrBII BglII BmgBI BseYI BsiWI BspEI BspHI BsrBI BsrGI BssHII BssSI BstBI BstZ17I ClaI DraI EagI EcoRI EcoRV FspI HindIII HpaI KasI KpnI MfeI MluI MscI NcoI NdeI NgoMIV NheI NruI NsiI PciI PmlI PsiI PstI PvuI PvuII SacI SacII SalI ScaI SmaI SnaBI SpeI SphI SspI StuI XbaI XhoI Juxtapose:  C-terms or N-terms Design a Zinc Finger Protein Enter the DNA target site. The ZF amino acid sequence predicted to recognize this site will be determined. This tool expects only valid triplets. Target site 5' 3' N-term backbone N-term fixed C-term backbone C-term fixed Zinc finger linker Include fixed sequences?  Predict Zinc Finger Protein DNA Binding Site Enter the ZF single letter amino acid sequence (1500 residues max). Recognizes only certain published helices. Search DNA Sequence and Target Site for Close Match Enter DNA sequence to be searched (10 kb max). Target site Number mismatches Search both strands IUPAC bases

Disclaimer:
While every effort has been made to ensure the accuracy of the information reported on this site, we make no guarantees
and strongly suggest that you double check all sequences and information obtained here before using them.