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Publication List
Hierarchical and multi-resolution representation of protein flexibility.
Bioinformatics 2006, Sep 18.
Yong Zhao, Daniel Stoffler, and Michel F. SannerGetting across the nuclear pore complex: new insights into nucleocytoplasmic transport.
Can J Physiol Pharmacol 2006, 84:499-507.
Daniel Stoffler, Kyrill Schwarz-Herion, Ueli Aebi, and Birthe FahrenkrogFrom the trap to the basket: getting to the bottom of the nuclear pore complex
Chromosoma 2006, 115: 15-26.
Roderick Y.H. Lim, Ueli Aebi, Daniel StofflerImaging, measuring and manipulating biological matter from the millimeter to nanometer scale
NATO ASI Series 2005, XII, 479 p, Hardcover, pp 85-110. ISBN: 1-4020-3614-0. Publ: Springer.
Daniel Stoffler and Ueli AebiVisualizing nature at work from the nano to the macro scale
NanoBiotechnology 2005, 1, 7-21
Michel Sanner, Martin Stolz, Peter Burkhard, Xiang-Peng Kong, Guanwei Min, Tung-Tien Sun, Sergei Driamov, Ueli Aebi, and Daniel StofflerTangible interfaces for structural molecular biology
Structure (Camb) 2005, 13:483-491
Alexandre Gillet, Michel Sanner, Daniel Stoffler and Arthur OlsonTangible augmented interfaces for structural molecular biology
IEEE Comput Graph Appl 2005, 25:13-17
Alexandre Gillet, Michel Sanner, Daniel Stoffler and Arthur OlsonAugmented reality with tangible auto-fabricated models for molecular biology applications
Proceedings of IEEE Visualization 2004, 235-241
Alexandre Gillet, David Goodsell, Michel Sanner, Daniel Stoffler and Arthur OlsonCryo-electron Tomography Provides Novel Insights into Nuclear Pore
Architecture: Implications for Nucleocytoplasmic Transport.
J Mol Biol 2003, 328:119-130
Daniel Stoffler, Bernd Feja, Birthe Fahrenkrog, Jochen Walz, Dieter Typke, and Ueli AebiIntegrating biomolecular analysis and visual programming:
flexibility and interactivity in the design of bioinformatics tools
In the proceedings of HICSS-36, Hawaii International conference
on system sciences, 2003, Hawaii
Daniel Stoffler, Sophie I. Coon, Ruth Huey, Arthur J. Olson, and Michel F. SannerEvolutionary analysis of HIV-1 protease inhibitors: Methods
for design of inhibitors that evade resistance.
Proteins 2002, 48:63-74.
Daniel Stoffler, Michel F. Sanner, Garrett M. Morris, Arthur J. Olson, David S. GoodsellViPEr, a Visual Programming Environment for Python
The 10th International Python Conference 2002, Virginia USA.
Michel F. Sanner, Daniel Stoffler, Arthur J. Olson
Won the award for the best paper at the Python conferenceLocalization of uroplakin Ia, the urothelial receptor for bacterial
adhesin FimH, on the six inner domains of the 16nm urothelial
plaque particle.
J Mol Biol. 2002, 317:697-706.
Guangwei Min, Martin Stolz, Ge Zhou, Fengxia Liang, Peter Sebbel, Daniel Stoffler,
Rudi Glockshuber, Tung-Tien-Sun, Ueli Aebi, and Xian-Peng KongPolymerisation of chemically cross-linked actin:thymosin beta(4)
complex to filamentous actin: alteration in helical parameters and
visualisation of thymosin beta(4) binding on F-actin.
J Mol Biol. 2002, 315:613-25.
Edda Ballweber, Ewald Hannappel, Thomas Huff, Harald Stephan, Markus Haener,
Nicole Taschner, Daniel Stoffler, Ueli Aebi, Hans Georg MannherzNuclear pore complex architecture and functional dynamics.
Curr Top Microbiol Immunol. 2001, 259:95-117.
Daniel Stoffler, Birthe Fahrenkrog, and Ueli AebiMonitoring biomolecular interactions by time-lapse atomic force microscopy
Journal of Structural Biology 2000, 131:171-180.
Martin Stolz, Daniel Stoffler, Ueli Aebi, and Claire GoldsburyPolymerization, three-dimensional structure and mechanical
properties of dictyostelium versus rabbit muscle actin filaments
Journal of Molecular Biology 2000, 303:171-184.
Michel O. Steinmetz, Andreas Hoenger, Daniel Stoffler, Ueli Aebi, and Cora-Ann SchoenenbergerPolymerization and structure of nucleotide-free actin filaments
Journal of Molecular Biology 2000, 295:517-526.
Enrique M. De La Cruz, Anna Mandinova, Michel O. Steinmetz, Daniel Stoffler,
Ueli Aebi, and Tom D. PollardImaging biological matter across dimensions: from cells to
molecules and atoms
The FASEB Journal 1999, 13:S195-S200.
Daniel Stoffler, Michel O. Steinmetz, and Ueli AebiStructure, assembly, and dynamics of actin filaments in situ and in vitro
Microsc Res Tech. 1999, 47:38-50.
Cora-Ann Schoenenberger, Michel O. Steinmetz, Daniel Stoffler, Anna Mandinova, and Ueli AebiCalcium-mediated structural changes of native nuclear pore complexes monitored by time-lapse atomic force microscopy
Journal of Molecular Biology 1999, 287:741-752.
Daniel Stoffler, Kenneth N. Goldie, Berhard Feja, and Ueli AebiThe nuclear pore complex: from molecular architecture to
functional dynamics
Current Opinions in Cell Biology 1999, 11:391-401.
Daniel Stoffler, Birthe Fahrenkrog, and Ueli AebiThree-dimensional analysis of the 16 nm urothelial plaque particle:
Luminal surface exposure, preferential head-to-head
interaction, and hinge formation
Journal of Molecular Biology 1999, 285:595-608.
Bechara Kachar, Fengxia Liang, Ulysses Lins, Mingxiao Ding, Xue-Ru Wu, Daniel Stoffler, Ueli Aebi, and Tung-Tien SunActin: Dissecting the structural basis of its oligomerization,
polymerization and polymorphism
Biological Bulletin 1998, 194:337-341.
Michel O. Steinmetz, Daniel Stoffler and Ueli AebiEvaluating atomic models of F-actin with an undecagold-tagged phalloidin derivative
Journal of Molecular Biology 1998, 276:1-6.
Michel O. Steinmetz, Daniel Stoffler, Shirley A. Müller, Werner Jahn, Bettina Wolpensinger, Kenneth N. Goldie, Andreas Engel, Heinz Faulstich, and Ueli AebiActin: from cell biology to atomic detail
Journal of Structural Biology 1997, 119(3):295-320.
Michel O. Steinmetz, Daniel Stoffler, Andreas Hoenger, Andreas Bremer, and Ueli AebiTubulin rings are universal polymers of the tubulin family - alpha/beta,
gamma and FtsZ
Journal of Cell Biology 1996, 135:5-8.
Harold P. Erickson and Daniel StofflerMolecular mimicry in halothane hepatitis: biochemical and structural
characterization of lipoylated autoantigens
Toxicology 1995, 97:199-224.
Joseph Gut, Urs Christen, Nora Frey, Valerie Koch, and Daniel Stoffler
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