BLAST Search
Alvinella pompejana
(Hotworm) cDNA Library
example query sequence:
>human_sod
MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVICLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGN AGSRLACGVIGIAQ
Search
Choose a translation
PROTEIN query - TRANSLATED database [tblastn]
TRANSLATED query - TRANSLATED database [tblastx]
NUCLEOTIDE query - NUCLEOTIDE database [blastn]
Set Subsequence
From:
To:
Choose database
EST.hotworm.jgi.20060829
raw.hotworm.jgi.20060829
cluster_726.hotworm.jgi.20060829
hotworm.cdna
hotworm-dss
xenopus.contigs
Genetic codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Options
for advanced blasting
Choose filter
Low complexity
Mask for lookup table only
Mask lower case
Expect
Word Size
2
3
7
11
13
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Gap Costs
Existence:
8
9
10
11
12
Extension:
0
1
2
3
Other advanced
Last updated: March 8, 2007
e-mail questions/comments/bug reports about this page to
Brian Chapados