structural analysis


analysis tools	SRSWWW-Top Page EMBL WWW Services volume and packing analysis packages cast server for pocket and cavity identification protein structure verification server for ProCheck, SurVol and WHAT IF The Principles of Protein Structure using the Internet Birkbeck College (University of London) Protein Structure Multimedia Course Birkbeck College (University of London)

SEQUOIA sequence and/or structural protein alignment software by Dr. Chris Bruns of The Scripps Research Institute SCOP structural classification of proteins DALI comparison of protein structures. VAST vector-based protein neighbor analyzer. FSSP fold classification based on structure-structure alignment of proteins CATH protein structure classification TOPS DEJAVU server CE server structure comparison and alignment using the combinatorial extension technique.	comparison tools

3d modelling	Fred Cohen's Laboratory Home Page for software for predicting protein structures, including the nnpredict program. jpred prediction of protein secondary structure by a consensus method expasy Center for Biological Sequence Analysis at the Technical University of Denmark BIOcomputing 3D modelling unit servers Sander's Group Site now at CMBI

PDB file format is the de facto standard for macromolecular structures. mmCIF is the macromolecular Crystallographic Information File which is an alternative to the PDB file of the Brookhaven Data Bank.	file formats