ADT Introduction Ligand Grid Docking Run Analyze

AutoDockTools Tutorial




Table of Contents

  1. Introduction: the basics.
  2. Ligand: formatting the small molecule.
  3. Grid: creating parameter file for AutoGrid specifying grid types, location, dimensions.
  4. Docking: creating parameter file for AutoDock specifying molecules, grids, algorithm to use, etc.
  5. Run: starting AutoGrid and AutoDock.
  6. Analyze: visualizing results of AutoDock.

ADT Introduction Ligand Grid Docking Run Analyze