Recent PDB releases or updates: week of 17 July 2009

• 1bnz.pdb. dna binding protein/dna 31-jul-98 1bnz
  Title: sso7d hyperthermophile protein/dna complex
  Author: y. -g. gao, s. -y. su, h. robinson, s. padmanabhan, l. lim, b. s. mccrary, s. p. edmondos, j. w. shrive, a. h. -j. wang
  Keywords: dna binding protein/dna complex
  
• 1cpi.pdb. complex (acid proteinase/peptide) 16-oct-95 1cpi
  Title: regioselective structural and functional mimicry of peptides. design of hydrolytically stable cyclic peptidomimetic inhibitors of hiv-1 protease
  Author: j. l. martin
  
  
• 1hck.pdb. protein kinase 03-jun-96 1hck Mg
  Title: human cyclin-dependent kinase 2
  Author: u. schulze-gahmen, h. l. de bondt, s. -h. kim
  Keywords: serine/threonine protein kinase, atp-binding, cell cycle, cell division, mitosis, phosphorylation
  
• 1hcl.pdb. protein kinase 03-jun-96 1hcl
  Title: human cyclin-dependent kinase 2
  Author: u. schulze-gahmen, h. l. de bondt, s. -h. kim
  Keywords: serine/threonine protein kinase, atp-binding, cell cycle, cell division, mitosis, phosphorylation
  
• 1hyt.pdb. hydrolase(metalloproteinase) 04-may-94 1hyt Zn Ca
  Title: re-determination and refinement of the complex of benzylsuccinic acid with thermolysin and its relation to the complex with carboxypeptidase a
  Author: a. c. hausrath, b. w. matthews
  
  
• 1lna.pdb. metalloprotease 13-may-94 1lna Co Ca
  Title: a structural analysis of metal substitutions in thermolysin
  Author: d. r. holland, a. c. hausrath, d. juers, b. w. matthews
  
  
• 1lnb.pdb. hydrolase (metalloprotease) 13-may-94 1lnb Fe Ca
  Title: a structural analysis of metal substitutions in thermolysin
  Author: d. r. holland, a. c. hausrath, d. juers, b. w. matthews
  
  
• 1lnc.pdb. hydrolase (metalloprotease) 13-may-94 1lnc Mn Ca
  Title: a structural analysis of metal substitutions in thermolysin
  Author: d. r. holland, a. c. hausrath, d. juers, b. w. matthews
  
  
• 1lnd.pdb. hydrolase (metalloprotease) 13-may-94 1lnd Zn Ca
  Title: a structural analysis of metal substitutions in thermolysin
  Author: d. r. holland, a. c. hausrath, d. juers, b. w. matthews
  
  
• 1lne.pdb. hydrolase (metalloprotease) 13-may-94 1lne Ca Cd
  Title: a structural analysis of metal substitutions in thermolysin
  Author: d. r. holland, a. c. hausrath, d. juers, b. w. matthews
  
  
• 1lnf.pdb. hydrolase (metalloprotease) 13-may-94 1lnf Zn Ca
  Title: a structural analysis of metal substitutions in thermolysin
  Author: d. r. holland, b. w. matthews
  
  
• 1r0d.pdb. structural protein 19-sep-03 1r0d Se
  Title: hip1r thatch domain core
  Author: t. j. brett, d. h. fremont, midwest center for structural genomics (mcsg)
  Keywords: actin-binding, structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg, structural protein
  
• 1suo.pdb. oxidoreductase 26-mar-04 1suo Cl Fe
  Title: structure of mammalian cytochrome p450 2b4 with bound 4-(4- chlorophenyl)imidazole
  Author: e. e. scott, m. a. white, y. a. he, e. f. johnson, c. d. stout, j. r. halpert
  Keywords: membrane protein, cyp 2b4, cyp lm2, cytochrome p450, monooxygenase
  
• 1tmn.pdb. hydrolase (metalloproteinase) 29-jun-87 1tmn Zn Ca
  Title: binding of n-carboxymethyl dipepetide inhibitors to thermolysin determined by x-ray crystallography. a novel class of transition-state analogues for zinc peptidases
  Author: a. f. monzingo, b. w. matthews
  
  
• 1tue.pdb. replication 24-jun-04 1tue
  Title: the x-ray structure of the papillomavirus helicase in complex with its molecular matchmaker e2
  Author: e. a. abbate, j. m. berger, m. r. botchan
  Keywords: helicase, replication, e1e2 complex, aaa+ protein
  
• 1u04.pdb. hydrolase/gene regulation 12-jul-04 1u04 Se
  Title: crystal structure of full length argonaute from pyrococcus furiosus
  Author: j. j. song, s. k. smith, g. j. hannon, l. joshua-tor
  Keywords: silencing, argonaute, piwi, paz, risc, slicer, rnase h, hydrolase/gene regulation complex
  
• 1y62.pdb. toxin 03-dec-04 1y62
  Title: a 2.4 crystal structure of conkunitzin-s1, a novel kunitz- fold cone snail neurotoxin.
  Author: c. y. dy, p. buczek, m. p. horvath
  Keywords: beta sheet, 310 helix, kunitz fold, toxin
  
• 1zyt.pdb. hydrolase 10-jun-05 1zyt Cl
  Title: crystal structure of spin labeled t4 lysozyme (a82r1)
  Author: m. r. fleissner, d. cascio, m. r. sawaya, k. hideg, w. l. hubbell
  Keywords: epr, modified cysteine, hydrolase
  
• 2cuu.pdb. hydrolase 28-may-05 2cuu Cl
  Title: crystal structure of spin labeled t4 lysozyme (v131r1)
  Author: m. r. fleissner, d. cascio, m. r. sawaya, k. hideg, w. l. hubbell
  Keywords: epr, modified cysteine, hydrolase
  
• 2fvy.pdb. transport protein 31-jan-06 2fvy Ca
  Title: high resolution glucose bound crystal structure of ggbp
  Author: m. j. borrok, l. l. kiessling, k. t. forest
  Keywords: hinge, chemotaxis, transport,, transport protein
  
• 2gbp.pdb. periplasmic binding protein 23-feb-89 2gbp Ca
  Title: sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein
  Author: n. k. vyas, m. n. vyas, f. a. quiocho
  
  
• 2hcg.pdb. luminescent protein 16-jun-06 2hcg Mg
  Title: structure of s65t y66f gfp variant after cyclization, carbon-carbon bond cleavage, and oxygen incorporation reactions
  Author: d. p. barondeau, c. j. kassmann, j. a. tainer, e. d. getzoff
  Keywords: cyclization, cleavage, fluorophore, luminescent protein
  
• 2hgd.pdb. luminescent protein 26-jun-06 2hgd
  Title: structure of s65a y66f gfp variant with an oxidized chromophore
  Author: d. p. barondeau, c. j. kassmann, j. a. tainer, e. d. getzoff
  Keywords: cyclization, oxidation, fluorophore, gfp, luminescent protein
  
• 2hgy.pdb. luminescent protein 27-jun-06 2hgy
  Title: structure of s65a y66f e222a gfp variant after cyclization and carbon-carbon bond cleavage
  Author: d. p. barondeau, c. j. kassmann, j. a. tainer, e. d. getzoff
  Keywords: cyclization, carbon-carbon bond cleavage, radical, gfp, luminescent protein
  
• 2hjo.pdb. luminescent protein 30-jun-06 2hjo Mg
  Title: crystal structure of v224h design intermediate for gfp metal ion reporter
  Author: d. p. barondeau, j. l. tubbs, j. a. tainer, e. d. getzoff
  Keywords: intermediate, gfp, fluorophore, reporter, luminescent protein
  
• 2hph.pdb. sugar binding protein 17-jul-06 2hph Ca
  Title: high resolution structure of e. coli glucose/galactose binding protein bound with glucose
  Author: m. j. cuneo, h. w. hellinga
  Keywords: glucose binding protein, chemotaxis, sugar binding protein
  
• 2jjn.pdb. oxidoreductase 15-apr-08 2jjn Fe
  Title: structure of closed cytochrome p450 eryk
  Author: c. savino, g. sciara, a. e. miele, s. g. kendrew, b. vallone
  Keywords: iron, heme, monooxygenase, metal-binding, antibiotic biosynthesis, tie-rod mechanism of action, cytochrome p450, substrate specificity
  
• 2jjo.pdb. oxidoreductase 15-apr-08 2jjo Fe
  Title: structure of cytochrome p450 eryk in complex with its natural substrate erd
  Author: c. savino, g. sciara, a. e. miele, s. g. kendrew, b. vallone
  Keywords: heme, monooxygenase, metal-binding, antibiotic biosynthesis, tie-rod mechanism of action, oxidoreductase, cytochrome p450, substrate specificity
  
• 2jjp.pdb. oxidoreductase 15-apr-08 2jjp Cl Fe
  Title: structure of cytochrome p450 eryk in complex with inhibitor ketoconazole (kc)
  Author: c. savino, g. sciara, a. e. miele, s. g. kendrew, b. vallone
  Keywords: heme, monooxygenase, metal-binding, antibiotic biosynthesis, tie-rod mechanism of action, oxidoreductase, cytochrome p450, substrate specificity
  
• 2jjz.pdb. metal-binding protein 15-may-08 2jjz Cl Zn Na
  Title: crystal structure of human iba2, orthorhombic crystal form
  Author: j. o. schulze, c. quedenau, y. roske, a. turnbull, u. mueller, u. heinemann, k. buessow
  Keywords: calcium binding, actin crosslinking, ionized calcium binding adapter molecule 2, metal-binding protein
  
• 2juk.pdb. rna 30-aug-07 2juk (solution NMR)
  Title: guanidino neomycin b recognition of an hiv-1 rna helix
  Author: d. w. staple, v. venditti, n. niccolai, l. elson-schwab, y. tor, s. e. butcher
  Keywords: rna-ligand interactions, guanidinoglycosides, nmr, rna
  
• 2k0g.pdb. membrane protein 02-feb-08 2k0g (solution NMR)
  Title: solution structure of a bacterial cyclic nucleotide- activated k+ channel binding domain in complex with camp
  Author: s. schunke, m. stoldt, d. willbold
  Keywords: ion channel, helical bundle beta barrel core, phosphate binding cassette with camp bound, cyclic nucleotide binding domain, solution structure
  
• 2k5z.pdb. rna 01-jul-08 2k5z (solution NMR)
  Title: solution structure and dynamics of the apical stem-loop of duck hepatitis b virus
  Author: k. a. m. ampt, m. tessari, s. s. wijmenga
  Keywords: duck, apical loop, epsilon, rna
  
• 2k63.pdb. rna 04-jul-08 2k63 (solution NMR)
  Title: nmr solution structure of the d3'-hairpin including the exon binding site 1 (ebs1) of the group ii intron sc.ai5(gamma)
  Author: d. kruschel, r. k. o. sigel
  Keywords: ribozyme, splicing, exon binding site 1, ebs1, metal ion, magnesium, rna 29-mer, hairpin, nmr
  
• 2k64.pdb. rna 04-jul-08 2k64 (solution NMR)
  Title: nmr solution structure of the d3'-hairpin including ebs1 together with ibs1 of the group ii intron sc.ai5(gamma)
  Author: d. kruschel, r. k. o. sigel
  Keywords: ribozyme, splicing, exon binding site 1, ebs1, intron binding site 1, ibs1, metal ion, magnesium, rna 29-mer, rna 7-mer, hairpin, nmr
  
• 2k65.pdb. rna 04-jul-08 2k65 (solution NMR)
  Title: nmr solution structure of the exon/intron binding site 1 (ebs1/ibs1) of the group ii intron sc.ai5(gamma)
  Author: d. kruschel, r. k. o. sigel
  Keywords: ribozyme, splicing, exon binding site 1, ebs1, intron binding site 1, ibs1, nmr, rna 7-mer, duplex
  
• 2k66.pdb. rna 04-jul-08 2k66 (solution NMR)
  Title: nmr solution structure of the d3'-stem closed by a gaaa tetraloop of the group ii intron sc.ai5(gamma)
  Author: d. kruschel, r. k. o. sigel
  Keywords: ribozyme, splicing, d3'-stem, gaaa tetraloop, rna 22-mer, hairpin, nmr
  
• 2k6h.pdb. hydrolase 09-jul-08 2k6h (solution NMR)
  Title: nmr structure of an unusually 28 kda active mutant of maize ribosome-inactivating protein (mod)
  Author: y. yang, a. mak, p. shaw, k. sze
  Keywords: plant defense, protein synthesis inhibitor, solution structure, mod, nmr spectroscopy, hydrolase, toxin, zymogen
  
• 2k6m.pdb. structural protein 11-jul-08 2k6m (solution NMR)
  Title: solution structure of human supervillin headpiece
  Author: j. w. brown, v. didem, c. mcknight
  Keywords: svhp, hp, headpiece, villin, archvillin, nmr, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane, phosphoprotein, polymorphism, structural protein
  
• 2k6n.pdb. structural protein 11-jul-08 2k6n (solution NMR)
  Title: solution structure of human supervillin headpiece, minimized average
  Author: j. w. brown, v. didem, c. mcknight
  Keywords: svhp, hp, headpiece, villin, nmr, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane, phosphoprotein, polymorphism, structural protein
  
• 2k89.pdb. protein binding 04-sep-08 2k89 (solution NMR)
  Title: solution structure of a novel ubiquitin-binding domain from human plaa (pfuc, gly76-pro77 cis isomer)
  Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
  Keywords: wd repeat, protein binding
  
• 2k8a.pdb. protein binding 04-sep-08 2k8a (solution NMR)
  Title: solution structure of a novel ubiquitin-binding domain from human plaa (pfuc, gly76-pro77 trans isomer)
  Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
  Keywords: wd repeat, protein binding
  
• 2k8b.pdb. protein binding 04-sep-08 2k8b (solution NMR)
  Title: solution structure of plaa family ubiquitin binding domain (pfuc) cis isomer in complex with ubiquitin
  Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
  Keywords: cytoplasm, nucleus, phosphoprotein, ubl conjugation, wd repeat, protein binding
  
• 2k8c.pdb. protein binding 04-sep-08 2k8c (solution NMR)
  Title: solution structure of plaa family ubiquitin binding domain (pfuc) trans isomer in complex with ubiquitin
  Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
  Keywords: cytoplasm, nucleus, phosphoprotein, ubl conjugation, wd repeat, protein binding
  
• 2kcp.pdb. ribosomal protein 24-dec-08 2kcp (solution NMR)
  Title: solution structure of 30s ribosomal protein s8e; from methanothermobacter thermautotrophicus, northeaststructural genomics consortium (nesg) target tr71d
  Author: g. liu, p. rossi, d. wang, c. nwosu, l. owens, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: 30s ribosomal protein s8e, beta, nesg, ribonucleoprotein, ribosomal protein, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
  
• 2kk0.pdb. transcription regulator 14-jun-09 2kk0 (solution NMR)
  Title: solution structure of dead ringer-like protein 1 (at-rich interactive domain-containing protein 3a) from homo sapiens, northeast structural genomics consortium (nesg) target hr4394c
  Author: g. liu, d. wang, c. nwosu, l. owens, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: protein structure initiative, northeast structural genomics consortium, transcription regulator
  
• 2kk7.pdb. hydrolase 16-jun-09 2kk7 (solution NMR)
  Title: nmr solution structure of the n terminal domain of subunit e (e1-52) of a1ao atp synthase from methanocaldococcus jannaschii
  Author: s. gayen, a. balakrishna, g. gruber
  Keywords: methanocaldococcus jannaschii, a1ao atp synthase, atp synthesis, hydrogen ion transport, ion transport, transport, hydrolase
  
• 2kke.pdb. structural genomics, unknown function 18-jun-09 2kke (solution NMR)
  Title: solution nmr structure of a dimeric protein of unknown function from methanobacterium thermoautotrophicum, northeast structural genomics consortium target tr5
  Author: g. v. t. swapna, x. gunsalus, l. huang, k. xiao, j. k. everett, t. b. acton, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: northeast structural genomics consortium, nesg, unknown function
  
• 2kku.pdb. structural genomics, unknown function 29-jun-09 2kku (solution NMR)
  Title: solution structure of protein af2351 from archaeoglobus fulgidus. northeast structural genomics consortium target att9/ontario center for structural proteomics target af2351
  Author: b. wu, a. yee, c. fares, a. lemak, s. rumpel, a. semest, g. t. montelione, c. h. arrowsmith, northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, ontario centre for structural proteomics, ocsp, unknown function
  
• 2kl1.pdb. protein binding 29-jun-09 2kl1 (solution NMR)
  Title: solution structure of gtr34c from geobacillus thermodenitrificans. northeast structural genomics consortium target gtr34c
  Author: h. lee, h. wang, c. ciccosanti, m. jiang, r. nair, b. rost, t. b. acton, r. xiao, g. swapna, j. k. evertt, g. t. montelione, j. h. prestegard, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, protein binding
  
• 2kl2.pdb. structural genomics, unknown function 30-jun-09 2kl2 (solution NMR)
  Title: nmr solution structure of gi-13879369
  Author: b. pedrini, p. serrano, b. mohanty, m. geralt, k. wuthrich, i. wilson, joint center for structural genomics (jcsg)
  Keywords: alternative splicing, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg, unknown function
  
• 2kl4.pdb. structural genomics, unknown function 30-jun-09 2kl4 (solution NMR)
  Title: nmr structure of the protein nb7804a
  Author: b. mohanty, m. geralt, w. augustyniak, p. serrano, r. horst, i. a. wilson, k. wuthrich, joint center for structural genomics (jcsg)
  Keywords: bacillus halodurans, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg, unknown function
  
• 2kl5.pdb. structural genomics, unknown function 30-jun-09 2kl5 (solution NMR)
  Title: solution nmr structure of protein yutd from b.subtilis, northeast structural genomics consortium target sr232
  Author: g. liu, h. hamilton, r. xiao, c. ciccosanti, c. j. ho, j. everett, r. nair, t. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: protein nmr, northeast structural genomics consortium (nesg), target sr232, psi-2, protein structure initiative, unknown function
  
• 2klc.pdb. structural genomics, unknown function 30-jun-09 2klc (solution NMR)
  Title: nmr solution structure of human ubiquitin-like domain of ubiquilin 1, northeast structural genomics consortium (nesg) target ht5a
  Author: r. s. doherty, s. dhe-paganon, c. fares, s. lemak, a. gutmanas, m. garcia, a. yee, g. t. montelione, c. h. arrowsmith, northeast structural genomics consortium (nesg), structural genomics consortium (sgc), ontario centre for structural proteomics (ocsp)
  Keywords: unknown function, ontario centre for structural proteomics (ocsp)
  
• 2okw.pdb. luminescent protein 17-jan-07 2okw
  Title: a non-invasive gfp-based biosensor for mercury ions
  Author: r. r. chapleau, r. blomberg, p. c. ford, m. sagermann
  Keywords: biosensor, luminescent protein
  
• 2oky.pdb. luminescent protein 18-jan-07 2oky
  Title: a non-invasive gfp-based biosensor for mercury ions
  Author: m. sagermann, r. r. chapleau
  Keywords: gfp,, luminescent protein
  
• 2ooc.pdb. transferase 25-jan-07 2ooc Se
  Title: crystal structure of histidine phosphotransferase shpa (np_419930.1) from caulobacter crescentus at 1.52 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: hypothetical protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, transferase
  
• 2q1f.pdb. lyase 24-may-07 2q1f Ca Se
  Title: crystal structure of chondroitin sulfate lyase abc from bacteroides thetaiotaomicron wal2926
  Author: d. shaya, m. cygler
  Keywords: lyase
  
• 2sns.pdb. hydrolase (phosphoric diester) 14-may-82 2sns Ca
  Title: staphylococcal nuclease. proposed mechanism of action based on structure of enzyme-thymidine 3(prime),5(prime)- biphosphate-calcium ion complex at 1.5-angstroms resolution
  Author: m. j. legg, f. a. cotton, e. e. hazen jr.
  
  
• 2uwf.pdb. hydrolase 21-mar-07 2uwf Cu Ca
  Title: crystal structure of family 10 xylanase from bacillus halodurans
  Author: g. mamo, m. thunnissen, r. hatti-kaul, b. mattiasson
  Keywords: xylan degradation, xylanase structure, glycosidase, alkaliphilic, endoxylanase, bacillus halodurans, alkaline adaptation
  
• 2vmx.pdb. transferase 29-jan-08 2vmx
  Title: crystal structure of f351gbsshmt in complex with l-allo-thr
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, f351g, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vu5.pdb. transferase 21-may-08 2vu5
  Title: crystal structure of pndk from bacillus anthracis
  Author: g. misra, a. aggarwal, d. dube, m. s. zaman, y. singh, r. ramachandran
  Keywords: nucleotide-binding, atp-binding, metal-binding, phosphoprotein, nucleotide metabolism, nucleoside diphosphate kinase, kinase, cytoplasm, magnesium, transferase
  
• 2w55.pdb. oxidoreductase 04-dec-08 2w55 Ba Mo Fe
  Title: crystal structure of xanthine dehydrogenase (e232q variant) from rhodobacter capsulatus in complex with hypoxanthine
  Author: j. a. doebbler, j. j. truglio, s. leimkuhler, c. kisker
  Keywords: gout, iron, 2fe-2s, xanthine, iron-sulfur, molybdenum cofactor, hypoxanthine, metal-binding, oxidoreductase
  
• 2wf0.pdb. hydrolase 02-apr-09 2wf0 F
  Title: human bace-1 in complex with 4-ethyl-n-((1s,2r)-2-hydroxy-1- (phenylmethyl)-3-(((3-(trifluoromethyl)phenyl)methyl)amino) propyl)-8-(2-oxo-1-pyrrolidinyl)-6-quinolinecarboxamide
  Author: n. charrier, b. clarke, l. cutler, e. demont, c. dingwall, r. dunsdon, j. hawkins, c. howes, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
  Keywords: beta-site app cleaving enzyme
  
• 2wfs.pdb. viral protein 15-apr-09 2wfs (electron microscopy)
  Title: fitting of influenza virus np structure into the 9-fold symmetryzed cryoem reconstruction of an active rnp particle.
  Author: r. coloma, j. m. valpuesta, r. arranz, j. l. carrascosa, j. ortin, j. martin-benito
  Keywords: host-virus interaction, viral protein, rna viruses, nucleoprotein, ribonucleoprotein, rna, virion, nucleus, influenza, rna-binding
  
• 3a21.pdb. hydrolase 27-apr-09 3a21
  Title: crystal structure of streptomyces avermitilis beta-l- arabinopyranosidase
  Author: z. fujimoto, h. ichinose, s. kaneko
  Keywords: greek key motif, beta-jellyroll, beta- trefoil, hydrolase
  
• 3a22.pdb. hydrolase 27-apr-09 3a22
  Title: crystal structure of beta-l-arabinopyranosidase complexed with l-arabinose
  Author: z. fujimoto, h. ichinose, s. kaneko
  Keywords: greek key motif, beta-jellyroll, beta- trefoil, hydrolase
  
• 3a23.pdb. hydrolase 27-apr-09 3a23
  Title: crystal structure of beta-l-arabinopyranosidase complexed with d-galactose
  Author: z. fujimoto, h. ichinose, s. kaneko
  Keywords: greek key motif, beta-jellyroll, beta- trefoil, hydrolase
  
• 3a2b.pdb. transferase 09-may-09 3a2b
  Title: crystal structure of serine palmitoyltransferase from sphingobacterium multivorum with substrate l-serine
  Author: a. okamoto, j. hoseki
  Keywords: acyltransferase, pyridoxal phosphate, transferase
  
• 3a3u.pdb. biosynthetic protein 20-jun-09 3a3u K
  Title: crystal structure of mqnd (ttha1568), a menaquinone biosynthetic enzyme from thermus thermophilus hb8
  Author: r. arai, a. nishino, k. nagano, t. uchikubo-kamo, k. katsura, m. nishimoto, m. toyama, t. terada, s. kuramitsu, k. murayama, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, biosynthetic protein
  
• 3chd.pdb. hydrolase 09-mar-08 3chd
  Title: crystal structure of aspergillus fumigatus chitinase b1 in complex with dipeptide
  Author: o. a. andersen, d. m. f. van aalten
  Keywords: chitinase, peptide inhibitors, hydrolase, glycosidase
  
• 3cpf.pdb. cell cycle 31-mar-08 3cpf
  Title: crystal structure of human eukaryotic translation initiation factor eif5a
  Author: l. nedyalkova, y. tong, w. tempel, b. hong, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
  Keywords: leukemia, apoptosis, sgc, acetylation, alternative splicing, hypusine, initiation factor, nucleus, protein biosynthesis, cell cycle
  
• 3ctw.pdb. protein binding 14-apr-08 3ctw
  Title: crystal structure of rcda from caulobacter crescentus cb15
  Author: j. d. wilbur, j. a. taylor, r. r. kathleen
  
  
• 3d1v.pdb. transferase 06-may-08 3d1v
  Title: crystal structure of human pnp complexed with 2-mercapto(3h) quinazolinone
  Author: w. f. de azevedo jr. , l. a. basso, d. s. santos
  Keywords: drug design, crystallography, synchrotron, empirical scoring function, 2-mercapto-4(3h) quinazolinone, acetylation, disease mutation, glycosyltransferase, polymorphism, transferase
  
• 3dbk.pdb. hydrolase 01-jun-08 3dbk Zn Ca
  Title: pseudomonas aeruginosa elastase with phosphoramidon
  Author: d. b. mckay, m. t. overgaard
  Keywords: enzyme, phosphoramidon, protease inhibitor complex, calcium, hydrolase, metal-binding, metalloprotease, protease, secreted, zinc, zymogen
  
• 3dbl.pdb. cell cycle 01-jun-08 3dbl Zn
  Title: structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190wt-nedd8ala72gln)
  Author: j. souphron, b. a. schulman
  Keywords: activating enzyme, apoptosis, membrane, ubl conjugation pathway, atp-binding, ligase, nucleotide- binding, polymorphism, nucleus
  
• 3dbr.pdb. cell cycle 02-jun-08 3dbr Zn
  Title: structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190gln-nedd8ala72arg)
  Author: j. souphron, b. a. schulman
  Keywords: activating enzyme, apoptosis, membrane, ubl conjugation pathway, atp-binding, ligase, nucleotide- binding, polymorphism, nucleus
  
• 3dgc.pdb. cytokine/signaling protein 13-jun-08 3dgc Cl U
  Title: structure of il-22/il-22r1
  Author: b. c. jones, n. j. logsdon, m. r. walter
  Keywords: il-22r1, cytokine, receptor, signaling molecule, glycoprotein, polymorphism, secreted, membrane, transmembrane, cytokine/signaling protein complex
  
• 3djr.pdb. transport protein 24-jun-08 3djr
  Title: crystal structure of transthyretin variant l58h at neutral ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: thyroid hormone, transport, vitamin a
  
• 3djs.pdb. transport protein 24-jun-08 3djs
  Title: crystal structure of transthyretin variant l58h at acidic ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: thyroid hormone, transport, vitamin a
  
• 3djt.pdb. transport protein 24-jun-08 3djt
  Title: crystal structure of transthyretin variant v30m at acidic ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: thyroid hormone, transport, vitamin a
  
• 3djz.pdb. transport protein 24-jun-08 3djz
  Title: crystal structure of transthyretin variant l55p at neutral ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: thyroid hormone, transport, vitamin a
  
• 3dk0.pdb. transport protein 24-jun-08 3dk0
  Title: crystal structure of transthyretin variant l55p at acidic ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: thyroid hormone, transport, vitamin a
  
• 3dk2.pdb. transport protein 24-jun-08 3dk2
  Title: crystal structure of transthyretin variant y114h at acidic ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: thyroid hormone, transport, vitamin a
  
• 3dmm.pdb. immune system 01-jul-08 3dmm
  Title: crystal structure of immune coreceptor complex
  Author: r. wang, k. natarajan, d. h. margulies
  Keywords: glycoprotein, immune response, membrane, mhc i, phosphoprotein, transmembrane, immunoglobulin domain, secreted, envelope protein, alternative splicing, polymorphism, immune system
  
• 3do4.pdb. transport protein 03-jul-08 3do4
  Title: crystal structure of transthyretin variant t60a at acidic ph
  Author: l. cendron, g. zanotti, c. folli, r. berni
  Keywords: secreted, vitamin a
  
• 3dos.pdb. chaperone/structural protein 06-jul-08 3dos
  Title: crystal structure of the complex of the caf1m chaperone with the mini-fiber of two caf1 subunits (caf1:caf1), carrying the thr7phe and ala9val mutations in the gd donor strand
  Author: l. j. fooks, x. yu, e. moslehi-mohebi, v. tischenko, s. d. knight, s. macintyre, a. v. zavialov
  Keywords: protein-protein complex, donor strand complementation, chaperone, immunoglobulin domain, periplasm, plasmid, capsule, secreted, chaperone/structural protein complex
  
• 3dpb.pdb. chaperone/structural protein 07-jul-08 3dpb
  Title: crystal structure of the complex of the caf1m chaperone with the mini-fiber of two caf1 subunits (caf1:caf1), carrying the ala9val, ala11val, and leu13val mutations in the gd donor strand
  Author: l. j. fooks, x. yu, e. moslehi-mohebi, v. tischenko, s. d. knight, s. macintyre, a. v. zavialov
  Keywords: fimbriae, chaperone, protein- protein complex, beta barrel, immunoglobulin domain, periplasm, plasmid, capsule, secreted, chaperone/structural protein complex
  
• 3dps.pdb. transferase 09-jul-08 3dps
  Title: x-ray structure of the unliganded uridine phosphorylase from salmonella typhimurium in homodimeric form at 1.8a
  Author: a. m. mikhailov, a. a. lashkov
  Keywords: cytoplasm, glycosyltransferase
  
• 3dq0.pdb. oxidoreductase 09-jul-08 3dq0
  Title: maize cytokinin oxidase/dehydrogenase complexed with n6-(3- methoxy-phenyl)adenine
  Author: d. kopecny, p. briozzo
  Keywords: flavoprotein, fad, inhibitor, oxidoreductase, glycoprotein, secreted
  
• 3dqz.pdb. lyase 10-jul-08 3dqz Cl
  Title: structure of the hydroxynitrile lyase from arabidopsis thaliana
  Author: j. andexer, n. staunig, k. gruber
  Keywords: cyanogenesis, lyase
  
• 3dr0.pdb. electron transport 10-jul-08 3dr0 Fe
  Title: structure of reduced cytochrome c6 from synechococcus sp. pcc 7002
  Author: w. bialek, s. krzywda, m. jaskolski, a. szczepaniak
  Keywords: photosynthesis, cyanobacteria, electron transfer, electron transport, heme, iron, metal-binding, thylakoid, transport
  
• 3dr6.pdb. transferase 10-jul-08 3dr6 Se
  Title: structure of ynca, a putative acetyltransferase from salmonella typhimurium
  Author: a. u. singer, t. skarina, o. onopriyenko, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
  Keywords: csgid target, essential gene, salmonella typhimurium, idp00086, structural genomics, center for structural genomics of infectious diseases
  
• 3dr8.pdb. transferase 10-jul-08 3dr8 Cl Se
  Title: structure of ynca, a putative acetyltransferase from salmonella typhimurium with its cofactor acetyl-coa
  Author: a. u. singer, t. skarina, o. onopriyenko, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
  Keywords: csgid
  
• 3dsn.pdb. chaperone 13-jul-08 3dsn
  Title: crystal structure of the complex of the caf1m chaperone with the mini-fiber of two caf1 subunits (caf1:caf1), carrying the thr7phe mutation in the gd donor strand
  Author: l. j. fooks, x. yu, e. moslehi-mohebi, v. tischenko, s. d. knight, s. macintyre, a. v. zavialov
  Keywords: fimbrial subunit, fimbriae, donor strand complementation, protein-protein complex, beta barrel, immunoglobulin domain, periplasm, plasmid, capsule, secreted
  
• 3e1v.pdb. lyase 04-aug-08 3e1v Zn
  Title: h. influenzae beta-carbonic anhydrase, variant d44n
  Author: r. s. rowlett, d. a. chapnick, s. shah
  Keywords: active site mutant, lyase, metal- binding, zinc
  
• 3e1w.pdb. lyase 04-aug-08 3e1w Zn
  Title: h. influenzae beta-carbonic anhydrase, variant d44n in 100 mm sodium bicarbonate
  Author: r. s. rowlett
  Keywords: active site mutant, lyase, metal- binding, zinc
  
• 3e9h.pdb. ligase 22-aug-08 3e9h Mg
  Title: lysyl-trna synthetase from bacillus stearothermophilus complexed with l-lysylsulfamoyl adenosine
  Author: h. sakurama, t. takita, b. mikami, t. itoh, k. yasukawa, k. inouye
  Keywords: ligase, protein biosynthesis, aminoacyl-trna synthetase, atp-binding, cytoplasm, magnesium, metal-binding, nucleotide-binding
  
• 3e9i.pdb. ligase 22-aug-08 3e9i Mg
  Title: lysyl-trna synthetase from bacillus stearothermophilus complexed with l-lysine hydroxamate-amp
  Author: h. sakurama, t. takita, b. mikami, t. itoh, k. yasukawa, k. inouye
  Keywords: ligase, protein biosynthesis, atp-binding, cytoplasm, magnesium, metal-binding, nucleotide-binding
  
• 3ecb.pdb. immune system 29-aug-08 3ecb Mg
  Title: crystal structure of mouse h-2dd in complex with peptide p18-i10 derived from human immunodeficiency virus envelope glycoprotein 120
  Author: k. natarajan, r. wang, d. h. margulies
  Keywords: coiled coil, envelope protein, fusion protein, host-virus interaction, lipoprotein, palmitate, viral immunoevasion, virion, immune system
  
• 3erp.pdb. oxidoreductase 02-oct-08 3erp Cl Zn Na As
  Title: structure of idp01002, a putative oxidoreductase from and essential gene of salmonella typhimurium
  Author: a. u. singer, g. minasov, e. evdokimova, j. s. brunzelle, m. kudritska, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
  Keywords: predicted oxidoreductase, essential gene, salmonella, molecular replacement, structural genomics, center for structural genomics of infectious diseases, csgid
  
• 3etq.pdb. transport protein 08-oct-08 3etq
  Title: x-ray structure of cysteine-free fragment of mhcn2 c- terminal region from amino acids 443-630 including c508n, c584s, and c601s mutations
  Author: g. e. flynn
  Keywords: potassium channel, potassium transport, sodium, sodium channel, sodium transport, transmembrane, transport, voltage-gated channel, transport protein
  
• 3f32.pdb. metal binding protein 30-oct-08 3f32 Cd
  Title: horse spleen apoferritin
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: acetylation, iron, iron storage, metal- binding, metal binding protein
  
• 3f33.pdb. metal binding protein 30-oct-08 3f33 Cd
  Title: apoferritin: complex with propofol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol, acetylation, iron, iron storage, metal-binding, metal binding protein
  
• 3f34.pdb. metal binding protein 30-oct-08 3f34 Cd
  Title: apoferritin: complex with 2,6-diethylphenol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol analogue, 2,6- diethylphenol, acetylation, iron, iron storage, metal- binding, metal binding protein
  
• 3f35.pdb. metal binding protein 30-oct-08 3f35 Cd
  Title: apoferritin: complex with 2,6-diethylphenol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol analogue, 2,6- diethylphenol, acetylation, iron, iron storage, metal- binding, metal binding protein
  
• 3f36.pdb. metal binding protein 30-oct-08 3f36 Cd
  Title: apoferritin: complex with 2-isopropylphenol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol analogue, 2- isopropylphenol, acetylation, iron, iron storage, metal- binding, metal binding protein
  
• 3f37.pdb. metal binding protein 30-oct-08 3f37 Cd
  Title: apoferritin: complex with 2,6-dimethylphenol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol analogue, 2,6- dimethylphenol, acetylation, iron, iron storage, metal- binding, metal binding protein
  
• 3f38.pdb. metal binding protein 30-oct-08 3f38 Cd
  Title: apoferritin: complex with 2,6-dimethylphenol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol analogue, 2,6- dimethylphenol, acetylation, iron, iron storage, metal- binding, metal binding protein
  
• 3f39.pdb. metal binding protein 30-oct-08 3f39 Cd
  Title: apoferritin: complex with phenol
  Author: l. s. vedula, n. j. economou, m. j. rossi, r. g. eckenhoff, p. j. loll
  Keywords: anesthetic, propofol analogue, phenol, acetylation, iron, iron storage, metal-binding, metal binding protein
  
• 3f8o.pdb. dna 13-nov-08 3f8o
  Title: structure of d(cacgcg).d(cgcgtg) with low concentration of pdcl2
  Author: p. k. mandal, s. venkadesh, n. gautham
  
  
• 3f9p.pdb. oxidoreductase 14-nov-08 3f9p Cl Fe Ca
  Title: crystal structure of myeloperoxidase from human leukocytes
  Author: x. carpena, i. fita, c. obinger
  Keywords: oxidation, oxidoreductase, polymorphism, disulfide bond, heme, peroxidase
  
• 3fem.pdb. biosynthetic protein, transferase 30-nov-08 3fem
  Title: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from saccharomyces cerevisiae
  Author: m. strohmeier, v. windeisen, i. sinning, i. tews
  Keywords: synthase, pyridoxine biosynthesis, biosynthetic protein, transferase
  
• 3fgc.pdb. oxidoreductase 05-dec-08 3fgc
  Title: crystal structure of the bacterial luciferase:flavin complex reveals the basis of intersubunit communication
  Author: z. t. campbell, a. weichsel, w. r. montfort, t. o. baldwin
  Keywords: flavoprotein, fmn, luminescence, monooxygenase, oxidoreductase, photoprotein
  
• 3fhh.pdb. membrane protein 09-dec-08 3fhh Pb
  Title: crystal structure of the heme/hemoglobin outer membrane transporter shua from shigella dysenteriae
  Author: k. brillet, d. cobessi
  Keywords: transporter, tonb-dependent transporter, membrane, receptor, tonb box
  
• 3fjo.pdb. oxidoreductase 15-dec-08 3fjo
  Title: structure of chimeric yh cpr
  Author: s. morera, l. aigrain, g. truan
  Keywords: oxidoreductase, endoplasmic reticulum, flavoprotein, membrane, nadp, phosphoprotein, transmembrane, ubl conjugation, acetylation, congenital adrenal hyperplasia, disease mutation, polymorphism
  
• 3foo.pdb. electron transport 30-dec-08 3foo Fe Ni
  Title: a triangular cytochrome b562 superstructure mediated by ni coordination - monoclinic form
  Author: r. j. radford, f. a. tezcan
  Keywords: electron transport, heme, iron, metal- binding, periplasm, transport
  
• 3fop.pdb. electron transport 30-dec-08 3fop Fe Ni
  Title: a triangular cytochrome b562 superstructure mediated by ni coordination - hexagonal form
  Author: f. a. tezcan, r. j. radford
  Keywords: electron transport, heme, iron, metal- binding, periplasm, transport
  
• 3g9d.pdb. hydrolase 13-feb-09 3g9d Mg
  Title: crystal structure glycohydrolase
  Author: x. -d. li, f. k. winkler
  Keywords: drag, adp-ribosylation, posttranslational modification, hydrolase
  
• 3gbp.pdb. periplasmic binding protein 25-jan-90 3gbp Ca
  Title: structure of the periplasmic glucose/galactose receptor of salmonella typhimurium
  Author: s. l. mowbray
  
  
• 3gfe.pdb. transferase 26-feb-09 3gfe F
  Title: crystal structure of p38a mitogen-activated protein kinase in complex with a pyrazolopyridinone inhibitor
  Author: c. mohr, s. jordan
  Keywords: transferase, alternative splicing, atp-binding, cytoplasm, kinase, nucleotide- binding, nucleus, phosphoprotein, polymorphism
  
• 3gkh.pdb. transport protein 10-mar-09 3gkh
  Title: npc1(ntd)
  Author: h. j. kwon
  Keywords: cholesterol transfer, disease mutation, endosome, glycoprotein, lysosome, membrane, polymorphism, transmembrane, transport protein
  
• 3gki.pdb. transport protein 10-mar-09 3gki
  Title: npc1(ntd):cholesterol
  Author: h. j. kwon
  Keywords: cholesterol transfer, disease mutation, endosome, glycoprotein, lysosome, membrane, polymorphism, transmembrane, transport protein
  
• 3gkj.pdb. transport protein 10-mar-09 3gkj
  Title: npc1d(ntd):25hydroxycholesterol
  Author: h. j. kwon
  Keywords: cholesterol, cholesterol transfer, disease mutation, endosome, glycoprotein, lysosome, membrane, polymorphism, transmembrane, transport protein
  
• 3gs3.pdb. transcription, protein binding 26-mar-09 3gs3
  Title: structure of the n-terminal heat domain of symplekin from d. melanogaster
  Author: s. a. kennedy, m. r. redinbo
  Keywords: transcription, protein binding
  
• 3gsi.pdb. oxidoreductase 27-mar-09 3gsi Mg
  Title: crystal structure of d552a dimethylglycine oxidase mutant of arthrobacter globiformis in complex with tetrahydrofolate
  Author: t. tralau, p. lafite, c. levy, j. p. combe, n. s. scrutton, d. leys
  Keywords: channelling, fad binding, folinic acid, folate binding, amine oxidation
  
• 3gtd.pdb. lyase 27-mar-09 3gtd Na
  Title: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia prowazekii
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: ssgcid, fumarate, hydratase, cytoplasm, lyase, tricarboxylic acid cycle, seattle structural genomics center for infectious disease
  
• 3gua.pdb. choline-binding protein 28-mar-09 3gua
  Title: sulfates bound in the vestibule of achbp
  Author: s. b. hansen, p. taylor
  Keywords: ion selectivity, ion filter, receptor, choline- binding protein
  
• 3gzt.pdb. virus 07-apr-09 3gzt Ca (electron microscopy)
  Title: vp7 recoated rotavirus dlp
  Author: j. z. chen, e. c. settembre, s. c. harrison, n. grigorieff
  Keywords: vp7, vp6, vp2, 7rp, dlp, icosahedral virus, capsid protein, disulfide bond, endoplasmic reticulum, glycoprotein, membrane, transmembrane, virion
  
• 3gzu.pdb. virus 07-apr-09 3gzu Zn (electron microscopy)
  Title: vp7 recoated rotavirus dlp
  Author: j. z. chen, e. c. settembre, s. c. harrison, n. grigorieff
  Keywords: vp7, vp6, vp2, 7rp, dlp, capsid protein, metal- binding, virion, zinc, core protein, rna-binding, icosaderal virus
  
• 3h15.pdb. replication/dna 10-apr-09 3h15 Zn
  Title: crystal structure of replication initiation factor mcm10-id bound to ssdna
  Author: e. m. warren, b. f. eichman
  Keywords: zinc finger, ccch, dna replication, ssdna, dna- binding, metal-binding, nucleus, zinc, zinc-finger, replication/dna complex
  
• 3h3e.pdb. structural genomics, metal binding prote16-apr-09 3h3e Zn Se
  Title: crystal structure of tm1679, a metal-dependent hydrolase of the beta-lactamase superfamily
  Author: d. r. cooper, n. olekhnovitch, u. derewenda, z. s. derewenda, integrated center for structure and function innovation (isfi)
  Keywords: surface entropy reduction, isfi, beta- lactamase superfamily, psi-2, protein structure initiative, integrated center for structure and function innovation, unknown function, metal binding protein
  
• 3h5b.pdb. hydrolase 21-apr-09 3h5b Cl Na
  Title: crystal structure of wild type hiv-1 protease with novel p1'-ligand grl-02031
  Author: y. tie, y. f. wang, i. t. weber
  Keywords: wild type protease, protease inhibitor, p1'-ligand, aids, hydrolase
  
• 3h5f.pdb. de novo protein 22-apr-09 3h5f Cl Zn
  Title: switching the chirality of the metal environment alters the coordination mode in designed peptides.
  Author: a. f. a. peacock, j. a. stuckey, v. l. pecoraro
  Keywords: parallel three-stranded coiled coil, l- penicillamine, de novo protein
  
• 3h5g.pdb. de novo protein 22-apr-09 3h5g Zn
  Title: switching the chirality of the metal environment alters the coordination mode in designed peptides.
  Author: a. f. a. peacock, j. a. stuckey, v. l. pecoraro
  Keywords: parallel three-stranded coiled coil, d- penicillamine, de novo protein
  
• 3h8k.pdb. ligase 29-apr-09 3h8k
  Title: crystal structure of ube2g2 complxed with the g2br domain of gp78 at 1.8-a resolution
  Author: r. c. kalathur, r. das, j. li, a. r. byrd, x. ji
  Keywords: all alpha, ligase, ubl conjugation pathway, alternative splicing, endoplasmic reticulum, membrane, metal-binding, phosphoprotein, polymorphism, receptor, transmembrane, zinc, zinc-finger
  
• 3hah.pdb. endocytosis 01-may-09 3hah Ca
  Title: crystal structure of human pacsin1 f-bar domain (c2 lattice)
  Author: q. wang, m. v. a. s. navarro, g. peng, k. r. rajashankar, h. sondermann
  Keywords: syndapin,fap52,f-bar, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, sh3 domain
  
• 3hai.pdb. endocytosis 01-may-09 3hai Ca
  Title: crystal structure of human pacsin1 f-bar domain (p21 lattice)
  Author: q. wang, m. v. a. s. navarro, g. peng, k. r. rajashankar, h. sondermann
  Keywords: syndapin,fap52,f-bar, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, sh3 domain
  
• 3haj.pdb. endocytosis 01-may-09 3haj Ca
  Title: crystal structure of human pacsin2 f-bar domain (p212121 lattice)
  Author: q. wang, m. v. a. s. navarro, g. peng, k. r. rajashankar, h. sondermann
  Keywords: syndapin,fap52,f-bar, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism, sh3 domain
  
• 3hbb.pdb. oxidoreductase, transferase 04-may-09 3hbb
  Title: structures of dihydrofolate reductase-thymidylate synthase of trypanosoma cruzi in the folate-free state and in complex with two antifolate drugs, trimetrexate and methotrexate
  Author: n. schormann, o. senkovich, d. chattopadhyay
  Keywords: oxidoreductase, transferase
  
• 3hd0.pdb. hydrolase 06-may-09 3hd0 Se
  Title: crystal structure of tm1865, an endonuclease v from thermotoga maritima
  Author: d. utepbergenov, d. r. cooper, u. derewenda, z. s. derewenda, integrated center for structure and function innovation (isfi)
  Keywords: magnesium, nuclease
  
• 3hd7.pdb. exocytosis 07-may-09 3hd7
  Title: helical extension of the neuronal snare complex into the membrane, spacegroup c 1 2 1
  Author: a. stein, g. weber, m. c. wahl, r. jahn
  Keywords: alternative splicing, cell membrane, cytoplasm, lipoprotein, palmitate, exocytosis
  
• 3hd9.pdb. exocytosis 07-may-09 3hd9
  Title: helical extension of the neuronal snare complex into the membrane, spacegroup i 21 21 21
  Author: a. stein, g. weber, m. c. wahl, r. jahn
  Keywords: alternative splicing, cell membrane, cytoplasm, lipoprotein, palmitate, transport protein, exocytosis
  
• 3hfn.pdb. rna binding protein 12-may-09 3hfn
  Title: crystal structure of an hfq protein from anabaena sp.
  Author: a. boggild, m. overgaard, p. valentin-hansen, d. e. brodersen
  Keywords: sm, rna-binding protein, srna, translational regulation, rna binding protein
  
• 3hfo.pdb. rna binding protein 12-may-09 3hfo
  Title: crystal structure of an hfq protein from synechocystis sp.
  Author: a. boggild, m. overgaard, p. valentin-hansen, d. e. brodersen
  Keywords: sm, rna-binding protein, srna, translational regulation, rna binding protein
  
• 3hht.pdb. lyase 17-may-09 3hht Cl Co
  Title: a mutant of the nitrile hydratase from geobacillus pallidus having enhanced thermostability
  Author: j. c. van wyk, b. t. sewell, d. a. cowan, m. f. sayed, t. l. tsekoa, a. o. tastan bishop
  Keywords: lyase
  
• 3hhu.pdb. chaperone 17-may-09 3hhu
  Title: human heat-shock protein 90 (hsp90) in complex with {4-[3- (2,4-dihydroxy-5-isopropyl-phenyl)-5-thioxo- 1,5-dihydro- [1,2,4]triazol-4-yl]-benzyl}-carbamic acid ethyl ester {zk 2819}
  Author: m. adler, m. whitlow
  Keywords: atpase, chaperone, atp-binding, heat shock, nucleotide-binding, phosphorylation, alternative splicing, cytoplasm, phosphoprotein, stress response
  
• 3hiu.pdb. structural genomics, unknown function 20-may-09 3hiu Na Se
  Title: the crystal structure of protein (xcc3681) from xanthomonas campestris pv. campestris str. atcc 33913
  Author: k. tan, x. xu, h. cui, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: xcc3681, xanthomonas campestris pv. campestris str. atcc 33913, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3hl7.pdb. transferase 26-may-09 3hl7 Cl F
  Title: crystal structure of human p38alpha complexed with sd-0006
  Author: h. -s. shieh, r. g. kurumbail, r. a. stegeman, j. m. williams
  Keywords: atp-binding, cytoplasm, kinase, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
  
• 3hll.pdb. transferase 27-may-09 3hll F Br
  Title: crystal structure of human p38alpha complexed with ph-797804
  Author: h. -s. shieh, j. m. williams, r. a. stegeman, r. g. kurumbail
  Keywords: atp-binding, cytoplasm, kinase, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
  
• 3hmu.pdb. transferase 29-may-09 3hmu Cl
  Title: crystal structure of a class iii aminotransferase from silicibacter pomeroyi
  Author: r. toro, j. b. bonanno, u. ramagopal, j. freeman, k. t. bain, s. miller, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: transferase, aminotransferase, pyridoxal phosphate, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
  
• 3hmy.pdb. hydrolase 29-may-09 3hmy
  Title: crystal structure of hcr/t complexed with gt2
  Author: c. chen, z. fu, j. -j. p. kim, j. t. barbieri, m. r. baldwin
  Keywords: gt2, ganglioside, carbohydrate binding pocket, disulfide bond, hydrolase, metal-binding, metalloprotease, neurotoxin, plasmid, protease, toxin, zinc
  
• 3hn1.pdb. hydrolase 29-may-09 3hn1
  Title: crystal structure of hcr/t complexed with gt2 and lactose
  Author: c. chen, z. fu, j. -j. p. kim, j. t. barbieri, m. r. baldwin
  Keywords: lactose, receptor binding pocket, disulfide bond, hydrolase, metal-binding, metalloprotease, neurotoxin, plasmid, protease, toxin, zinc
  
• 3hnw.pdb. structural genomics, unknown function 01-jun-09 3hnw I Se
  Title: crystal structure of a basic coiled-coil protein of unknown function from eubacterium eligens atcc 27750
  Author: y. kim, r. hendricks, l. keigher, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3hqv.pdb. structural protein, contractile protein 08-jun-09 3hqv (fiber diffraction)
  Title: low resolution, molecular envelope structure of type i collagen in situ determined by fiber diffraction. single type i collagen molecule, rigid body refinement
  Author: j. p. orgel
  Keywords: hydroxylation, pyrrolidone carboxylic acid, secreted, structural protein, contractile protein
  
• 3hr2.pdb. structural protein, contractile protein 08-jun-09 3hr2 (fiber diffraction)
  Title: low resolution, molecular envelope structure of type i collagen in situ determined by fiber diffraction. single type i collagen molecule, post rigid body refinement, 'relaxed'
  Author: j. p. orgel
  Keywords: hydroxylation, pyrrolidone carboxylic acid, secreted, structural protein, contractile protein
  
• 3hul.pdb. transferase 15-jun-09 3hul
  Title: structure of putative homoserine kinase thrb from listeria monocytogenes
  Author: u. a. ramagopal, r. toro, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics, nysgxrc
  
• 3hur.pdb. isomerase 15-jun-09 3hur
  Title: crystal structure of alanine racemase from oenococcus oeni
  Author: j. b. bonanno, m. rutter, k. t. bain, s. hu, r. romero, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: isomerase, pyridoxal phosphate, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
  
• 3hwq.pdb. metal binding protein 18-jun-09 3hwq Zn Fe
  Title: structure of the complex of c-terminal half (c-lobe) of bovine lactoferrin with alpha-methyl-4-(2-methylpropyl) benzene acetic acid
  Author: r. mir, g. vikram, r. prem-kumar, m. sinha, n. singh, s. sharma, p. kaur, t. p. singh
  Keywords: secreted, serine protease, transport
  
• 3hxt.pdb. ligase 22-jun-09 3hxt Mg Ni
  Title: structure of human mthfs
  Author: d. wu, y. li, g. song, c. cheng, r. zhang, a. joachimiak, n. shaw, z. - j. liu
  Keywords: cancer, one-carbon metabolic network, acetylation, atp-binding, cytoplasm, folate-binding, ligase, magnesium, nucleotide-binding, polymorphism
  
• 3hy3.pdb. ligase 22-jun-09 3hy3 Mg Ni
  Title: structure of human mthfs with 10-formyltetrahydrofolate
  Author: d. wu, y. li, g. song, c. cheng, n. shaw, z. -j. liu
  Keywords: cancer, 10-formyltetrahydrofolate, acetylation, atp-binding, cytoplasm, folate-binding, ligase, magnesium, nucleotide-binding, polymorphism
  
• 3hy4.pdb. ligase 22-jun-09 3hy4 Mg Ni
  Title: structure of human mthfs with n5-iminium phosphate
  Author: d. wu, y. li, g. song, c. cheng, n. shaw, z. -j. liu
  Keywords: cancer, n5-iminium phosphate, acetylation, atp- binding, cytoplasm, folate-binding, ligase, magnesium, nucleotide-binding, polymorphism
  
• 3hy6.pdb. ligase 22-jun-09 3hy6 Mg Ni
  Title: structure of human mthfs with adp
  Author: d. wu, y. li, g. song, c. cheng, n. shaw, z. -j. liu
  Keywords: cancer, adp, acetylation, atp-binding, cytoplasm, folate-binding, ligase, magnesium, nucleotide- binding, polymorphism
  
• 3hyv.pdb. oxidoreductase 23-jun-09 3hyv
  Title: 3-d x-ray structure of the sulfide:quinone oxidoreductase from the hyperthermophilic bacterium aquifex aeolicus
  Author: m. marcia, u. ermler, g. h. peng, h. michel
  Keywords: monotopic membrane protein, flavoprotein, rossmann-fold domain, oxidoreductase
  
• 3hyw.pdb. oxidoreductase 23-jun-09 3hyw
  Title: 3-d x-ray structure of the sulfide:quinone oxidoreductase of the hyperthermophilic bacterium aquifex aeolicus in complex with decylubiquinone
  Author: m. marcia, u. ermler, g. h. peng, h. michel
  Keywords: flavoprotein, polysulfur, oxidoreductase
  
• 3hyx.pdb. oxidoreductase 23-jun-09 3hyx
  Title: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex aeolicus in complex with aurachin c
  Author: m. marcia, u. ermler, g. h. peng, h. michel
  Keywords: sulfide oxidation, rossmann-fold domain, flavoprotein, quinone reduction, oxidoreductase
  
• 3hzj.pdb. hydrolase activator 23-jun-09 3hzj Se
  Title: crystal structure of the rabgap domain of the rabgap1l protein
  Author: l. nedyalkova, w. tempel, y. tong, n. zhong, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
  Keywords: gtpase activating protein, sgc, alternative splicing, gtpase activation, phosphoprotein, polymorphism, hydrolase activator
  
• 3i0p.pdb. oxidoreductase 25-jun-09 3i0p
  Title: crystal structure of malate dehydrogenase from entamoeba histolytica
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: amoebic dysentery, ssgcid, niaid, infectious disease, structural genomics, seattle structural genomics center for infectious disease, oxidoreductase
  
• 3i0t.pdb. unknown function 25-jun-09 3i0t
  Title: sulfur-sad at long wavelength: structure of bh3703 from bacillus halodurans
  Author: u. a. ramagopal, r. toro, s. wasserman, s. k. burley, s. c. almo
  
  
• 3i0z.pdb. isomerase 25-jun-09 3i0z Cl Se
  Title: crystal structure of putative putative tagatose-6-phosphate ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae tigr4 at 1.70 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative putative tagatose-6-phosphate ketose/aldose isomerase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, isomerase
  
• 3i18.pdb. structural genomics, unknown function 25-jun-09 3i18 Br Se
  Title: crystal structure of the pdz domain of the sdrc-like protein (lmo2051) from listeria monocytogenes, northeast structural genomics consortium target lmr166b
  Author: f. forouhar, s. lew, j. seetharaman, j. janjua, r. xiao, c. ciccosanti, l. zhao, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
  
• 3i1e.pdb. structural genomics, unknown function 26-jun-09 3i1e
  Title: crystal structure of the pdz domain of the sdrc-like protein (lin2157) from listeria innocua, northeast structural genomics consortium target lkr136c
  Author: f. forouhar, s. lew, j. seetharaman, s. sahdev, r. xiao, c. ciccosanti, e. l. foote, d. lee, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
  
• 3i1h.pdb. apoptosis 26-jun-09 3i1h
  Title: crystal structure of human bfl-1 in complex with bak bh3 peptide
  Author: r. guan, r. xiao, l. zhao, t. acton, e. white, c. gelinas, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: metal- binding, transmembrane, zinc
  
• 3i1j.pdb. oxidoreductase 26-jun-09 3i1j Cl Na Se
  Title: structure of a putative short chain dehydrogenase from pseudomonas syringae
  Author: a. u. singer, e. evdokimova, m. kudritska, a. m. edwards, joachimiak, a. , a. savchenko, midwest center for structural genomics (mcsg)
  Keywords: pseudomonas syringae, dimer, mixed alpha-beta, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, oxidoreductase
  
• 3i38.pdb. chaperone 30-jun-09 3i38 Se
  Title: structure of a putative chaperone protein dnaj from klebsiella pneumoniae subsp. pneumoniae mgh 78578
  Author: e. filippova, g. minasov, l. shuvalova, o. kiryukhina, j. bearden, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
  Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg, chaperone
  
• 3i3v.pdb. transport protein 01-jul-09 3i3v Se
  Title: crystal structure of probable secreted solute-binding lipoprotein from streptomyces coelicolor
  Author: l. damodharan, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
  Keywords: psi-ii, 11318g, solute-binding lipoprotein, structural genomics, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, lipoprotein, transport protein
  
• 3i44.pdb. oxidoreductase 01-jul-09 3i44 Na
  Title: crystal structure of aldehyde dehydrogenase from bartonella henselae at 2.0a resolution
  Author: seattle structural genomics center for infectious disease (ssgcid)
  Keywords: aldehyde dehydrogenase, oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid
  
• 3i45.pdb. signaling protein 01-jul-09 3i45
  Title: crystal structure of putative twin-arginine translocation pathway signal protein from rhodospirillum rubrum atcc 11170
  Author: v. n. malashkevich, r. toro, c. morano, m. j. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics, signaling protein
  
• 3i47.pdb. lyase 01-jul-09 3i47
  Title: crystal structure of putative enoyl coa hydratase/isomerase (crotonase) from legionella pneumophila subsp. pneumophila str. philadelphia 1
  Author: v. n. malashkevich, r. toro, c. morano, m. j. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: crystal structure,protein structure initiative, new york structural genomix research consortium, nysgxrc, crotonase, isomerase, lyase, psi-2, new york sgx research center for structural genomics
  
• 3i4e.pdb. lyase 01-jul-09 3i4e
  Title: crystal structure of isocitrate lyase from burkholderia pseudomallei
  Author: b. l. staker, t. arakaki, seattle structural genomics center for infectious disease
  Keywords: structural genomics, lyase, seattle structural genomics center for infectious disease, ssgcid
  
• 3i4j.pdb. transferase 01-jul-09 3i4j
  Title: crystal structure of aminotransferase, class iii from deinococcus radiodurans
  Author: a. a. fedorov, e. v. fedorov, r. toro, m. j. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics
  
• 3i4k.pdb. isomerase 01-jul-09 3i4k Mg Se
  Title: crystal structure of muconate lactonizing enzyme from corynebacterium glutamicum
  Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgxrc, target 9450d, muconate lactonizing enzyme, corynebacterium glutamicum, crystal structure, isomerase, psi-2, protein structure initiative, new york sgx research center for structural genomics
  
• 3i4s.pdb. hydrolase 02-jul-09 3i4s
  Title: crystal structure of histidine triad protein blr8122 from bradyrhizobium japonicum
  Author: y. patskovsky, u. ramagopal, r. toro, j. freeman, j. do, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: phosphatase, hit superfamily, psi-2, nysgxrc, structural genomics, protein structure initiative, new york sgx research center for structural genomics
  
• 3i5t.pdb. transferase 06-jul-09 3i5t
  Title: crystal structure of aminotransferase prk07036 from rhodobacter sphaeroides kd131
  Author: y. patskovsky, r. toro, j. freeman, j. do, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: pyridoxal 5'-phosphate, psi-2, nysgxrc, structural genomics, protein structure initiative, new york sgx research center for structural genomics, pyridoxal phosphate, transferase
  
• 3i6e.pdb. isomerase 07-jul-09 3i6e Mg Na
  Title: crystal structure of muconate lactonizing enzyme from placeholder species
  Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: nysgxrc,targer 9468a, muconate lactonizing enzyme, psi-2, protein structure initiative, new york sgx research center for structural genomics, isomerase
  
• 3i7j.pdb. hydrolase 08-jul-09 3i7j Se
  Title: crystal structure of a beta-lactamase (mb2281c) from mycobacterium bovis, northeast structural genomics consortium target mbr246
  Author: f. forouhar, s. lew, j. seetharaman, s. sahdev, r. xiao, c. ciccosanti, h. wang, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, hydrolase
  
• 3i7m.pdb. hydrolase 08-jul-09 3i7m Se
  Title: n-terminal domain of xaa-pro dipeptidase from lactobacillus brevis.
  Author: j. osipiuk, x. xu, h. cui, j. ng, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: apc64794.2, xaa-pro dipeptidase, metallo peptidase, creatinase/prolidase n-terminal domain, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, hydrolase
  
• 3tmn.pdb. hydrolase (metalloproteinase) 29-jun-87 3tmn Zn Ca
  Title: the binding of l-valyl-l-tryptophan to crystalline thermolysin illustrates the mode of interaction of a product of peptide hydrolysis
  Author: h. m. holden, b. w. matthews
  
  
• 4tln.pdb. hydrolase (metalloproteinase) 08-feb-82 4tln Zn Ca
  Title: binding of hydroxamic acid inhibitors to crystalline thermolysin suggests a pentacoordinate zinc intermediate in catalysis
  Author: b. w. matthews, m. a. holmes
  
  
• 5tln.pdb. hydrolase (metalloproteinase) 08-feb-82 5tln Zn Ca
  Title: binding of hydroxamic acid inhibitors to crystalline thermolysin suggests a pentacoordinate zinc intermediate in catalysis
  Author: b. w. matthews, m. a. holmes