Recent PDB releases or updates: week of 26 June 2009
- 1btu.pdb.
serine protease 01-sep-98 1btu
Ca
Title: porcine pancreatic elastase complexed with (3s, 4r)-1- toluenesulphonyl-3-ethyl-azetidin-2-one-4-carboxylic acid
Author: r. c. wilmouth, i. j. clifton, c. j. schofield
Keywords: serine proteinase, serine protease
- 1h6r.pdb.
luminescent protein 22-jun-01 1h6r
Cl
Title: the oxidized state of a redox sensitive variant of green fluorescent protein
Author: h. ostergaard, a. henriksen, f. g. hansen, j. r. winther
Keywords: luminescence, green fluorescent protein, yellow-emission
- 1hcj.pdb.
luminescent protein 04-may-01 1hcj
Title: photoproduct of the wild-type aequorea victoria green fluorescent protein
Author: j. j. van thor, t. gensch, k. j. hellingwerf, l. johnson
Keywords: fluorescent protein, beta-barrel, bioluminescence, luminescence
- 1hr7.pdb.
hydrolase 21-dec-00 1hr7
Zn
Title: yeast mitochondrial processing peptidase beta-e73q mutant
Author: a. b. taylor, b. s. smith, s. kitada, k. kojima, h. miyaura, z. otwinowski, a. ito, j. deisenhofer
Keywords: hydrolase
- 1jus.pdb.
transcription 27-aug-01 1jus
Se
Title: crystal structure of the multidrug binding transcriptional repressor qacr bound to rhodamine 6g
Author: m. a. schumacher, m. c. miller, s. grkovic, m. h. brown, r. a. skurray, r. g. brennan
Keywords: s. aureus, qacr, rhodamine 6g, cationic lipophilic drugs, transcription
- 1onx.pdb.
hydrolase 02-mar-03 1onx
Zn
Title: crystal structure of isoaspartyl dipeptidase from escherichia coli complexed with aspartate
Author: j. b. thoden, r. marti-arbona, f. m. raushel, h. m. holden
Keywords: hydrolase, metalloprotease
- 1p6b.pdb.
hydrolase 29-apr-03 1p6b
Zn
Title: x-ray structure of phosphotriesterase, triple mutant h254g/h257w/l303t
Author: c. m. hill, w. li, j. b. thoden, h. m. holden, f. m. raushel
Keywords: tim barrel, nerve agents, hydrolase
- 1p6c.pdb.
hydrolase 29-apr-03 1p6c
Zn
Title: crystal structure of phosphotriesterase triple mutant h254g/h257w/l303t complexed with diisopropylmethylphosphonate
Author: c. m. hill, w. li, j. b. thoden, h. m. holden, f. m. raushel
Keywords: tim barrel, nerve agent, hydrolase
- 1p7j.pdb.
dna binding protein 02-may-03 1p7j
Title: crystal structure of engrailed homeodomain mutant k52e
Author: e. j. stollar, u. mayor, s. c. lovell, l. federici, s. m. freund, a. r. fersht, b. f. luisi
- 1qjg.pdb.
ketosteroid isomerase 24-jun-99 1qjg
Title: crystal structure of delta5-3-ketosteroid isomerase from pseudomonas testosteroni in complex with equilenin
Author: h. -s. cho, b. -h. oh
Keywords: ksi, isomerase, steroid isomeration
- 1qw7.pdb.
hydrolase 01-sep-03 1qw7
Co Na
Title: structure of an engineered organophosphorous hydrolase with increased activity toward hydrolysis of phosphothiolate bonds
Author: a. d. mesecar, j. k. grimsley, t. holton, j. r. wild
Keywords: phosphotriesterase, vx, rvx, 4- methylbenzylphosphonate, mutant
- 1rre.pdb.
hydrolase 08-dec-03 1rre
Se
Title: crystal structure of e.coli lon proteolytic domain
Author: i. botos, e. e. melnikov, s. cherry, j. e. tropea, a. g. khalatova, f. rasulova, z. dauter, m. r. maurizi, t. v. rotanova, a. wlodawer, a. gustchina
Keywords: catalytic ser-lys dyad, hydrolase
- 1s6y.pdb.
hydrolase 28-jan-04 1s6y
Se
Title: 2.3a crystal structure of phospho-beta-glucosidase
Author: v. tereshko, i. dementieva, y. kim, f. collat, a. joachimiak, a. kossiakoff, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, protein structure initiative, midwest center for structural genomics, mcsg
- 1t10.pdb.
isomerase 14-apr-04 1t10
Title: phosphoglucose isomerase from leishmania mexicana in complex with substrate d-fructose-6-phosphate
Author: a. t. cordeiro, o. t. thiemann
- 1taz.pdb.
hydrolase 19-may-04 1taz
Mg Zn
Title: catalytic domain of human phosphodiesterase 1b
Author: k. y. j. zhang, g. l. card, y. suzuki, d. r. artis, d. fong, s. gillette, d. hsieh, j. neiman, b. l. west, c. zhang, m. v. milburn, s. -h. kim, j. schlessinger, g. bollag
Keywords: hydrolase
- 1vat.pdb.
hydrolase 19-feb-04 1vat
I
Title: iodine derivative of hen egg-white lysozyme
Author: k. takeda, h. miyatake, s. y. park, m. kawamoto, n. kamiya, k. miki, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi, structural genomics, hydrolase
- 1vau.pdb.
hydrolase 19-feb-04 1vau
Cl Na Xe
Title: xenon derivative of hen egg-white lysozyme
Author: k. takeda, h. miyatake, s. y. park, m. kawamoto, n. kamiya, k. miki, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi, structural genomics, hydrolase
- 1w7s.pdb.
luminescent protein 09-sep-04 1w7s
Title: wild-type aequorea victoria green fluorescent protein
Author: j. j. van thor, g. y. georgiev, m. towrie, j. t. sage
Keywords: bioluminiescence, fluorescent protein, beta-barrel, bioluminescence
- 1w7t.pdb.
luminescent protein 09-sep-04 1w7t
Title: photoproduct of the wild-type aequorea victoria green fluorescent protein at 100 k
Author: j. j. van thor, g. y. georgiev, m. towrie, j. t. sage
Keywords: fluorescent protein, beta-barrel, bioluminescence, photoproduct
- 1w7u.pdb.
luminescent protein 09-sep-04 1w7u
Title: photoproduct of the wild-type aequorea victoria green fluorescent protein after structural annealing at 170k
Author: j. j. van thor, g. y. georgiev, m. towrie, j. t. sage
Keywords: fluorescent protein, beta-barrel, bioluminescence, photoproduct
- 1ybq.pdb.
hydrolase 21-dec-04 1ybq
Zn
Title: crystal structure of escherichia coli isoaspartyl dipeptidase mutant d285n complexed with beta- aspartylhistidine
Author: r. marti-arbona, v. fresquet, j. b. thoden, m. l. davis, h. m. holden, f. m. raushel
Keywords: dipeptidase
- 1zv9.pdb.
cellulosome 01-jun-05 1zv9
Se
Title: crystal structure analysis of a type ii cohesin domain from the cellulosome of acetivibrio cellulolyticus- semet derivative
Author: i. noach, s. rosenheck, r. lamed, l. shimon, e. bayer, f. frolow
- 2c9i.pdb.
luminescent protein 12-dec-05 2c9i
Title: structure of the fluorescent protein asfp499 from anemonia sulcata
Author: f. renzi, k. nienhaus, j. wiedenmann, b. vallone, g. u. nienhaus
Keywords: beta-barrel, bioluminescence, luminescence, luminescent protein
- 2c9j.pdb.
luminescent protein 12-dec-05 2c9j
Title: structure of the fluorescent protein cmfp512 at 1.35a from cerianthus membranaceus
Author: f. renzi, k. nienhaus, j. wiedenmann, b. vallone, g. u. nienhaus
Keywords: beta-barrel, bioluminescence, luminescence, luminescent protein
- 2dt9.pdb.
transferase 11-jul-06 2dt9
Title: crystal structure of the regulatory subunit of aspartate kinase from thermus flavus
Author: a. yoshida, t. tomita, s. fushinobu, t. kuzuyama, m. nishiyama
Keywords: regulatory subunit, transferase
- 2f83.pdb.
hydrolase 01-dec-05 2f83
Pt
Title: crystal structure at 2.9 angstroms resolution of human plasma coagulation factor xi zymogen
Author: e. papagrigoriou, p. a. mcewan, p. n. walsh, j. emsley
Keywords: apple domain, hydrolase
- 2fjf.pdb.
immune system 02-jan-06 2fjf
Title: structure of the g6 fab, a phage derived vegf binding fab
Author: c. wiesmann
Keywords: fab, dodecamer, immune system
- 2fr7.pdb.
oxidoreductase 19-jan-06 2fr7
Fe
Title: crystal structure of cytochrome p450 cyp199a2
Author: z. rao, l. l. wong, f. xu, s. g. bell
Keywords: oxidoreductase
- 2gc5.pdb.
ligase 13-mar-06 2gc5
Title: g51s mutant of l. casei fpgs
Author: c. a. smith, j. a. cross, a. l. bognar, x. sun
Keywords: p-loop, site-directed mutant, ligase
- 2h72.pdb.
electron transport 01-jun-06 2h72
Title: crystal structure of thioredoxin mutant e85d in hexagonal (p61) space group
Author: j. a. gavira, r. godoy-ruiz, b. ibarra-molero, j. m. sanchez-ruiz
Keywords: electron transport
- 2hld.pdb.
hydrolase 06-jul-06 2hld
Mg
Title: crystal structure of yeast mitochondrial f1-atpase
Author: v. kabaleeswaran, n. puri, j. e. walker, a. g. leslie, d. m. mueller
Keywords: atp synthase, f1fo, f1- atpase, hydrolase
- 2hqt.pdb.
biosynthetic protein, rna binding 19-jul-06 2hqt
Title: crystal structures of the interacting domains from yeast glutamyl-trna synthetase and trna aminoacylation and nuclear export cofactor arc1p reveal a novel function for an old fold
Author: h. simader, m. hothorn, d. suck
Keywords: biosynthetic protein, rna binding
- 2j8z.pdb.
oxidoreductase 31-oct-06 2j8z
Title: crystal structure of human p53 inducible oxidoreductase ( tp53i3,pig3)
Author: a. c. w. pike, n. shafqat, j. debreczeni, c. johansson, a. haroniti, o. gileadi, c. h. arrowsmith, a. edwards, j. weigelt, m. sundstrom, f. von delft, s. porte, i. fita, j. pares, x. pares, u. oppermann
Keywords: oxidoreductase, alternative splicing, quinone oxidoreductase, oxidative stress response
- 2jjy.pdb.
oxidoreductase 25-apr-08 2jjy
Title: crystal structure of francisella tularensis enoyl reductase (ftfabi) with bound nad
Author: s. r. luckner, h. lu, j. j. truglio, p. j. tonge, c. kisker
Keywords: fabi, oxidoreductase, enoyl reductase, francisella tularensis, fatty acid biosynthesis
- 2k3n.pdb.
structural protein 14-may-08 2k3n
(solution NMR)
Title: solution structure of the type 1 repetitive domain (tusp1- rp1) of the egg case silk from nephila antipodiana
Author: z. lin, w. huang, j. fan, d. yang
Keywords: structural protein
- 2k3o.pdb.
structural protein 14-may-08 2k3o
(solution NMR)
Title: solution structure of the type 2 repetitive domain (tusp1- rp2) of the egg case silk from nephila antipodiana
Author: z. lin, w. huang, j. fan, d. yang
Keywords: structural protein
- 2k3p.pdb.
structural protein 15-may-08 2k3p
(solution NMR)
Title: solution structure of the c-terminal domain (tusp1-c) of the egg case silk from nephila antipodiana
Author: z. lin, w. huang, j. fan, d. yang
Keywords: structural protein
- 2k3q.pdb.
structural protein 15-may-08 2k3q
(solution NMR)
Title: solution structure of the n-terminal domain (tusp1-n) of the egg case silk from nephila antipodiana
Author: z. lin, w. huang, j. fan, d. yang
Keywords: structural protein
- 2k8z.pdb.
dna 29-sep-08 2k8z
(solution NMR)
Title: dimeric solution structure of the dna loop d(tcgttgct)
Author: j. viladoms, n. escaja, m. frieden, i. gomez-pinto, e. pedroso, c. gonzalez
Keywords: quadruplex, dna-loop, minor groove tetrad
- 2k90.pdb.
dna 29-sep-08 2k90
(solution NMR)
Title: dimeric solution structure of the dna loop d(tgcttcgt)
Author: j. viladoms, n. escaja, m. frieden, i. gomez-pinto, e. pedroso, c. gonzalez
Keywords: quadruplex, dna-loop, minor groove tetrad
- 2k97.pdb.
dna 30-sep-08 2k97
(solution NMR)
Title: dimeric solution structure of the cyclic octamer d(pcgctccgt)
Author: j. viladoms, n. escaja, m. frieden, i. gomez-pinto, e. pedroso, c. gonzalez
Keywords: quadruplex, dna-loop, minor groove tetrad
- 2ka1.pdb.
membrane protein 30-oct-08 2ka1
(solution NMR)
Title: solution nmr structure of bnip3 transmembrane peptide dimer in detergent micelles
Author: e. s. sulistijo, k. r. mackenzie
Keywords: membrane helix-helix interactions, bnip3, transmembrane domain, homodimer, membrane protein folding, apoptosis, host-virus interaction, mitochondrion, phosphoprotein
- 2ka2.pdb.
membrane protein 30-oct-08 2ka2
(solution NMR)
Title: solution nmr structure of bnip3 transmembrane peptide dimer in detergent micelles with his173-ser172 intermonomer hydrogen bond restraints
Author: e. s. sulistijo, k. r. mackenzie
Keywords: membrane helix-helix interactions, bnip3, transmembrane domain, homodimer, membrane protein folding, apoptosis, host-virus interaction, mitochondrion, phosphoprotein
- 2ka9.pdb.
cell adhesion 03-nov-08 2ka9
(solution NMR)
Title: solution structure of psd-95 pdz12 complexed with cypin peptide
Author: w. n. wang, j. w. weng, x. zhang, m. l. liu, m. j. zhang
Keywords: tandem pdz domain, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein, postsynaptic cell membrane, sh3 domain, synapse, cell adhesion
- 2kb5.pdb.
hydrolase 20-nov-08 2kb5
(solution NMR)
Title: solution nmr structure of eosinophil cationic protein/rnase 3
Author: m. rico, m. bruix, d. v. laurents, j. santoro, m. jimenez, e. boix, m. moussaoui, m. nogues
Keywords: antibiotic, antimicrobial, endonuclease, glycoprotein, hydrolase, polymorphism
- 2kdq.pdb.
rna binding protein/rna 14-jan-09 2kdq
(solution NMR)
Title: simultaneous recognition of hiv-1 tar rna bulge and loop sequences by cyclic peptide mimic of tat protein
Author: a. davidson, t. c. leeper, g. varani
Keywords: peptidomimetics, peptide structure, rna recognition, immunodeficiency virus, tar rna, mimic of rna binding protein, rna binding protein/rna complex
- 2kef.pdb.
antibiotic, hormone 29-jan-09 2kef
(solution NMR)
Title: solution nmr structures of human hepcidin at 325k
Author: j. b. jordan, l. poppe, m. hainu, t. arvedson, r. syed, v. li, h. kohno, h. kim, l. p. miranda, j. cheetham, b. j. sasu
Keywords: antibiotic, antimicrobial, cleavage on pair of basic residues, disease mutation, fungicide, hormone, secreted
- 2kfv.pdb.
isomerase 27-feb-09 2kfv
(solution NMR)
Title: structure of the amino-terminal domain of human fk506- binding protein 3 / northeast structural genomics consortium target ht99a
Author: m. sunnerhagen, t. davis, a. gutmanas, c. fares, h. ouyang, a. lemak, y. li, j. weigelt, c. bountra, a. edwards, c. h. arrowsmith, s. dhe- paganon, northeast structural genomics consortium (nesg), structural genomics consortium (sgc)
Keywords: isomerase, nucleus, phosphoprotein, rotamase, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, structural genomics consortium, sgc
- 2kj7.pdb.
hormone 22-may-09 2kj7
(solution NMR)
Title: three-dimensional nmr structure of rat islet amyloid polypeptide in dpc micelles
Author: r. nanga, j. r. brender, j. xu, k. hartman, v. subramanian, a. ramamoorthy
Keywords: amylin, islet amyloid polypeptide, rat iapp, amidation, amyloid, cleavage on pair of basic residues, disulfide bond, hormone, secreted
- 2kjl.pdb.
sugar binding protein 31-may-09 2kjl
(solution NMR)
Title: nmr structures of a designed cyanovirin-n homolog lectin; lkamg
Author: l. m. i. koharudin, a. m. gronenborn
Keywords: cvnh, lectin, sugar binding protein
- 2kjr.pdb.
chaperone 08-jun-09 2kjr
(solution NMR)
Title: solution nmr structure of the n-terminal ubiquitin-like domain from tubulin-binding cofactor b, cg11242, from drosophila melanogaster. northeast structural genomics consortium target fr629a (residues 8-92)
Author: t. a. ramelot, j. r. cort, r. shastry, c. ciccosanti, m. jiang, r. nair, b. rost, g. swapna, t. b. acton, r. xiao, j. k. everett, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: ubiquitin, ubiquitin-like, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, signaling protein, chaperone
- 2kjs.pdb.
biosynthetic protein 08-jun-09 2kjs
(solution NMR)
Title: solution nmr structure of holo acyl carrier protein from geobacter metallireducens. northeast structural genomics consortium target gmr141
Author: m. j. smola, t. a. ramelot, l. zhao, k. hamilton, e. l. foote, r. xiao, r. nair, j. k. everett, g. swapna, t. b. acton, b. rost, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: acp, pns, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, biosynthetic protein
- 2o4m.pdb.
hydrolase 04-dec-06 2o4m
Zn As
Title: structure of phosphotriesterase mutant i106g/f132g/h257y
Author: j. kim, u. a. ramagopal, p. tsai, f. m. raushel, s. c. almo
Keywords: tim barrel, nerve agents, hydrolase
- 2o4q.pdb.
hydrolase 04-dec-06 2o4q
Title: structure of phosphotriesterase mutant g60a
Author: j. kim, u. a. ramagopal, p. c. tsai, f. m. raushel, s. c. almo
Keywords: tim barrel, nerve agents, hydrolase
- 2okt.pdb.
ligase 17-jan-07 2okt
Title: crystal structure of o-succinylbenzoic acid synthetase from staphylococcus aureus, ligand-free form
Author: y. patskovsky, r. toro, v. malashkevich, j. m. sauder, s. ozyurt, d. smith, m. dickey, m. maletic, a. powell, t. gheyi, s. r. wasserman, j. gerlt, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, nysgxrc, ligase
- 2q6t.pdb.
hydrolase 05-jun-07 2q6t
Title: crystal structure of the thermus aquaticus dnab monomer
Author: s. bailey, w. k. eliason, t. a. steitz
Keywords: helicase, dnab, hydrolase
- 2r1k.pdb.
hydrolase 23-aug-07 2r1k
Co Fe
Title: opda from agrobacterium radiobacter with bound diethyl phosphate from crystal soaking with the compound- 1.9 a
Author: d. l. ollis, c. j. jackson, j. l. foo, h. k. kim, p. d. carr, j. w. liu, g. salem
Keywords: opda, metalloenzyme, hydrolase
- 2r1l.pdb.
hydrolase 23-aug-07 2r1l
Co Fe
Title: opda from agrobacterium radiobacter with bound diethyl thiophosphate from crystal soaking with the compound- 1.95 a
Author: d. l. ollis, c. j. jackson, j. l. foo, h. k. kim, p. d. carr, j. w. liu, g. salem
Keywords: opda, metalloenzyme, hydrolase
- 2r1m.pdb.
hydrolase 23-aug-07 2r1m
Co Fe
Title: opda from agrobacterium radiobacter with bound product diethyl phosphate from crystal soaking with diethyl 4- methoxyphenyl phosphate (450h)- 2.5 a
Author: d. l. ollis, c. j. jackson, j. l. foo, h. k. kim, p. d. carr, j. w. liu, g. salem
Keywords: opda, metalloenzyme, hydrolase
- 2r1n.pdb.
hydrolase 23-aug-07 2r1n
Co Fe
Title: opda from agrobacterium radiobacter with bound slow substrate diethyl 4-methoxyphenyl phosphate (20h)- 1.7 a
Author: d. l. ollis, c. j. jackson, j. l. foo, h. k. kim, p. d. carr, j. w. liu, g. salem
Keywords: opda, metalloenzyme, hydrolase
- 2r1p.pdb.
hydrolase 23-aug-07 2r1p
Co Fe
Title: opda from agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 a
Author: d. l. ollis, c. j. jackson, j. l. foo, h. k. kim, p. d. carr, j. w. liu, g. salem
Keywords: opda, metalloenzyme, hydrolase
- 2v5t.pdb.
cell adhesion 10-jul-07 2v5t
Title: crystal structure of ncam2 ig2-3
Author: n. kulahin, k. rasmussen, o. christensen, v. berezin, e. bock, p. walmod, m. gajhede
Keywords: immunoglobulin domain, membrane, glycoprotein, cell adhesion, transmembrane, neural cell adhesion molecule
- 2vf1.pdb.
virus 29-oct-07 2vf1
Title: x-ray crystallographic structure of the picobirnavirus capsid
Author: s. duquerroy, b. da costa, a. vigouroux, j. lepault, j. navaza, b. delmas, f. a. rey
Keywords: viral protein, picobirnavirus, capsid protein, triacontahedron, virus
- 2vug.pdb.
ligase 26-may-08 2vug
Title: the structure of an archaeal homodimeric rna ligase
Author: m. a. brooks, l. meslet-cladiere, m. graille, j. kuhn, k. blondeau, h. myllykallio, h. van tilbeurgh
Keywords: ligase, amppnp, pab1020, pyrococcus abyssi, nucleotidyl- transferase
- 2vvk.pdb.
protein-binding 09-jun-08 2vvk
Title: grb2 sh3c (1)
Author: m. harkiolaki, t. tsirka, s. m. feller
Keywords: sh3 domain, sh2 domain, phosphoprotein, host-virus interaction, protein-binding, golgi apparatus, alternative splicing
- 2vwf.pdb.
protein-binding 24-jun-08 2vwf
Title: grb2 sh3c (2)
Author: m. harkiolaki, t. tsirka, s. m. feller
Keywords: phosphoprotein, golgi apparatus, grb2, alternative splicing, host-virus interaction, sh3c, signaling, sh2 domain, sh3 domain, protein-binding
- 2vxw.pdb.
cytokine 12-jul-08 2vxw
Title: structural and functional studies of the potent anti-hiv chemokine variant p2-rantes
Author: h. jin, p. li, p. j. liwang
Keywords: glycoprotein, cell-cell fusion, inflammatory response, secreted, cytokine, hiv entry, chemokine, chemotaxis
- 2w0z.pdb.
signaling protein 13-oct-08 2w0z
Title: grb2 sh3c (3)
Author: m. harkiolaki, t. tsirka, s. m. feller
Keywords: polymorphism, phosphoprotein, golgi apparatus, alternative splicing, host-virus interaction, sh3c, grb2, signaling, sh2 domain, sh3 domain
- 2w10.pdb.
hydrolase 13-oct-08 2w10
Title: mona sh3c in complex
Author: m. harkiolaki, s. m. feller
Keywords: tpr repeat, sh2 domain, sh3 domain, coiled coil, protein phosphatase, cytoplasmic vesicle, phosphoprotein, signal tranduction, sh3 domain/complex, sh3, gads, mona, dimer, hd-ptp, hydrolase, cytoplasm
- 2w16.pdb.
receptor 14-oct-08 2w16
Fe
Title: structures of fpva bound to heterologous pyoverdines
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w1q.pdb.
hydrolase 20-oct-08 2w1q
Na Ca
Title: unique ligand binding specificity for a family 32 carbohydrate-binding module from the mu toxin produced by clostridium perfringens
Author: e. ficko-blean, a. b. boraston
Keywords: glycosidase, glycoside hydrolase, clostridium perfringens, cbm, toxin, secreted, virulence, hydrolase
- 2w1s.pdb.
hydrolase 20-oct-08 2w1s
Na Ca Se
Title: unique ligand binding specificity of a family 32 carbohydrate-binding module from the mu toxin produced by clostridium perfringens
Author: e. ficko-blean, a. b. boraston
Keywords: clostridium perfringens, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase, family 84 glycoside hydrolase
- 2w1u.pdb.
hydrolase 20-oct-08 2w1u
Ca
Title: a family 32 carbohydrate-binding module, from the mu toxin produced by clostridium perfringens, in complex with beta- d-glcnac-beta(1,3)galnac
Author: e. ficko-blean, a. b. boraston
Keywords: family 84 glycoside hydrolase, glycosidase, hexosaminidase, clostridium perfringens, cbm, toxin, secreted, virulence, hydrolase
- 2w3p.pdb.
lyase 13-nov-08 2w3p
Title: boxc crystal structure
Author: j. bains, m. j. boulanger
Keywords: boxc, lyase, crotonase, ring cleaving, burkholderia xenovorans lb400 crotonase
- 2w6t.pdb.
receptor 19-dec-08 2w6t
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(dsm50106)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter, membrane protein
- 2w6u.pdb.
membrane protein 19-dec-08 2w6u
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(g173)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: fpva, iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporterfpva, tonb-dependent transporter
- 2w75.pdb.
receptor 20-dec-08 2w75
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: apo-fpva
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w76.pdb.
receptor 20-dec-08 2w76
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(pa6)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w77.pdb.
receptor 20-dec-08 2w77
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(pfl18.1)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w78.pdb.
receptor 20-dec-08 2w78
Fe
Title: structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(atcc13535)-fe complex
Author: j. greenwald, m. nader, h. celia, c. gruffaz, j. -m. meyer, i. j. schalk, f. pattus
Keywords: iron, membrane, receptor, tonb box, transport, siderophore, cell membrane, ion transport, iron transport, cell outer membrane, tonb-dependent transporter
- 2w82.pdb.
replication inhibitor 08-jan-09 2w82
Title: the structure of arda
Author: s. a. mcmahon, g. a. roberts, l. g. carter, l. p. cooper, h. liu, j. h. white, k. a. johnson, b. sanghvi, m. oke, m. d. walkinshaw, g. blakely, j. h. naismith, d. t. f. dryden
Keywords: replication inhibitor
- 2w8j.pdb.
transferase 16-jan-09 2w8j
Title: spt with plp-ser
Author: l. g. carter, m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8t.pdb.
transferase 19-jan-09 2w8t
Title: spt with plp, n100c
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8u.pdb.
transferase 19-jan-09 2w8u
Title: spt with plp, n100y
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8v.pdb.
transferase 19-jan-09 2w8v
Title: spt with plp, n100w
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8w.pdb.
transferase 19-jan-09 2w8w
Title: n100y spt with plp-ser
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2wbv.pdb.
structural protein 05-mar-09 2wbv
Title: canine adenovirus 2 fibre head in complex with sialic acid
Author: e. seiradake, d. henaff, h. wodrich, o. billet, m. perreau, c. hippert, f. mennechet, g. schoehn, h. lortat-jacob, h. dreja, s. ibanes, v. kalatzis, j. p. wang, r. w. finberg, s. cusack, e. j. kremer
Keywords: head, fiber, virus, fibre, adenovirus, hemagglutination, structural protein, red blood cell, sialyl-lactose, cell attachment, erythrocyte, sialic acid, fiber protein
- 2wdb.pdb.
hydrolase 23-mar-09 2wdb
Ca
Title: a family 32 carbohydrate-binding module, from the mu toxin produced by clostridium perfringens, in complex with beta- d-glcnac-beta(1,2)mannose
Author: e. ficko-blean, a. b. boraston
Keywords: family 84 glycoside hydrolase, glycosidase, hexosaminidase, clostridium perfringens, cbm, toxin, secreted, virulence, hydrolase
- 2wes.pdb.
antifungal protein 01-apr-09 2wes
Cl
Title: crystal structures of mutant e46q of tryptophan 5- halogenase (pyrh)
Author: x. zhu, j. h. naismith
Keywords: tryptophan 5-halogenase, antifungal protein
- 2wet.pdb.
antifungal protein 01-apr-09 2wet
Cl
Title: crystal structure of tryptophan 5-halogenase (pyrh) complex with fad (tryptophan)
Author: w. d. laurentis, x. zhu, j. h. naismith
Keywords: tryptophan 5-halogenase, antifungal protein
- 2weu.pdb.
antifungal protein 01-apr-09 2weu
Title: crystal structure of tryptophan 5-halogenase (pyrh) complex with substrate tryptophan
Author: k. leang, x. zhu, j. h. naismith
Keywords: tryptophan 5-halogenase, antifungal protein
- 2wez.pdb.
hydrolase 02-apr-09 2wez
Title: human bace-1 in complex with 1-ethyl-n-((1s,2r)-2-hydroxy-3- (((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl) propyl)-4-(2-oxo-1-pyrrolidinyl)-1h-indole-6-carboxamide
Author: n. charrier, b. clarke, l. cutler, e. demont, c. dingwall, r. dunsdon, j. hawkins, c. howes, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wf0.pdb.
hydrolase 02-apr-09 2wf0
F
Title: human bace-1 in complex with 4-ethyl-n-((1s,2r)-2-hydroxy-1- (phenylmethyl)-3-(((3-(trifluoromethyl)phenyl)methyl)amino) propyl)-8-(2-oxo-1-pyrrolidinyl)-6-quinolinecarboxamide
Author: n. charrier, b. clarke, l. cutler, e. demont, c. dingwall, r. dunsdon, j. hawkins, c. howes, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wf1.pdb.
hydrolase 02-apr-09 2wf1
Title: human bace-1 in complex with 7-ethyl-n-((1s,2r)-2-hydroxy-3- (((3-(methyloxy)phenyl(methyl)amino)-1-(phenylmethyl) propyl)-1-methyl-3,4-dihydro-1h-(1,2,5)thiadiazepino(3,4,5- hi)indole-9-carboxamide 2,2-dioxide
Author: n. charrier, b. clarke, e. demont, c. dingwall, r. dunsdon, j. hawkins, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wf2.pdb.
hydrolase 02-apr-09 2wf2
Title: human bace-1 in complex with 8-ethyl-n-((1s,2r)-2-hydroxy-3- (((3-(methyloxy)phenyl)methyl)amino)-1-(phenylmethyl) propyl)-1-methyl-3,4,7,8-tetrahydro-1h,6h-(1,2,5) thiadiazepino(5,4,3-de)quinoxaline-10-carboxamide 2,2- dioxide
Author: n. charrier, b. clarke, e. demont, c. dingwall, r. dunsdon, j. hawkins, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wf3.pdb.
hydrolase 02-apr-09 2wf3
Title: human bace-1 in complex with 6-(ethylamino)-n-((1s,2r)-2- hydroxy-3-(((3-(methyloxy)phenyl)methyl)amino)-1-( phenylmethyl)propyl)-1-methyl-1,3,4,5-tetrahydro-2,1- benzothiazepine-8-carboxamide 2,2-dioxide
Author: n. charrier, b. clarke, e. demont, c. dingwall, r. dunsdon, j. hawkins, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wf4.pdb.
hydrolase 02-apr-09 2wf4
Title: human bace-1 in complex with 6-ethyl-1-methyl-n-((1s)-2-oxo- 1-(phenylmethyl)-3-(tetrahydro-2h-pyran-4-ylamino)propyl)- 1,3,4,6-tetrahydro(1,2)thiazepino(5,4,3-cd)indole-8- carboxamide 2,2-dioxide
Author: n. charrier, b. clarke, l. cutler, e. demont, c. dingwall, r. dunsdon, j. hawkins, c. howes, j. hubbard, i. hussain, g. maile, r. matico, j. mosley, a. naylor, a. o'brien, s. redshaw, p. rowland, v. soleil, k. j. smith, s. sweitzer, p. theobald, d. vesey, d. s. walter, g. wayne
Keywords: beta-site app cleaving enzyme
- 2wfd.pdb.
ligase 03-apr-09 2wfd
Se
Title: structure of the human cytosolic leucyl-trna synthetase editing domain
Author: e. seiradake, w. mao, v. hernandez, s. j. baker, j. j. plattner, m. r. k. alley, s. cusack
Keywords: phosphoprotein, editing domain, nucleotide-binding, hydrolysis of mis-charged trnas, protein biosynthesis, leucyl-trna synthetase, human, ligase, cytoplasm, atp-binding, polymorphism
- 2wfe.pdb.
ligase 04-apr-09 2wfe
Title: structure of the candida albicans cytosolic leucyl-trna synthetase editing domain
Author: e. seiradake, w. mao, v. hernandez, s. j. baker, j. j. plattner, m. r. k. alley, s. cusack
Keywords: leucyl-trna synthetase, editing domain, candida albicans, hydrolysis of mis-charged trnas
- 2wfg.pdb.
ligase 05-apr-09 2wfg
B F
Title: structure of the candida albicans cytosolic leucyl-trna synthetase editing domain bound to a benzoxaborole-amp adduct
Author: e. seiradake, w. mao, v. hernandez, s. j. baker, j. j. plattner, m. r. k. alley, s. cusack
Keywords: leucyl-trna synthetase, editing domain, candida albicans, hydrolysis of mis-charged trnas, benzoxaborole, anti-fungal
- 2wfw.pdb.
atp-binding protein 15-apr-09 2wfw
Title: structure and activity of the n-terminal substrate recognition domains in proteasomal atpases - the arc domain structure
Author: s. djuranovic, m. d. hartmann, m. habeck, a. ursinus, p. zwickl, j. martin, a. n. lupas, k. zeth
Keywords: proteasomal atpases, pan, arc, aaa, atp-binding, nucleotide-binding
- 2wg5.pdb.
transcription/hydrolase 15-apr-09 2wg5
Title: proteasome-activating nucleotidase (pan) n-domain (57-134) from archaeoglobus fulgidus fused to gcn4
Author: m. d. hartmann, s. djuranovic, a. ursinus, k. zeth, a. n. lupas
Keywords: transcription regulation, nucleus, dna-binding, activator, phosphoprotein
- 2wg6.pdb.
transcription/hydrolase 15-apr-09 2wg6
Title: proteasome-activating nucleotidase (pan) n-domain (57-134) from archaeoglobus fulgidus fused to gcn4, p61a mutant
Author: m. d. hartmann, s. djuranovic, a. ursinus, k. zeth, a. n. lupas
Keywords: transcription regulation, nucleus, dna-binding, activator, phosphoprotein
- 2wgm.pdb.
membrane protein 21-apr-09 2wgm
Na
Title: complete ion-coordination structure in the rotor ring of na- dependent f-atp synthase
Author: t. meier, d. pogoryelov, k. diederichs
Keywords: transmembrane, c-ring structure, sodium transport, ion transport, cell membrane, atp synthesis
- 2wgx.pdb.
cell cycle 27-apr-09 2wgx
Zn
Title: human p53 core domain mutant m133l-v203a-y236f-n239y-t253i- n268d
Author: a. c. joerger, k. h. khoo, a. r. fersht
Keywords: li-fraumeni syndrome, metal binding, zinc, superstable mutant, dna-binding protein, polymorphism
- 2wii.pdb.
immune system 12-may-09 2wii
Ca
Title: complement c3b in complex with factor h domains 1-4
Author: j. wu, b. j. c. janssen, p. gros
Keywords: cleavage on pair of basic residues, age-related macular degeneration, regulator of complement activation, alternative pathway, alternative splicing, phosphoprotein, disulfide bond, thioester bond
- 2win.pdb.
immune system 13-may-09 2win
Mg
Title: c3 convertase (c3bbb) stabilized by scin
Author: j. wu, b. j. c. janssen, p. gros
Keywords: thioester bond, glycoprotein, immune system
- 2zc1.pdb.
hydrolase 02-nov-07 2zc1
Co Br
Title: organophosphorus hydrolase from deinococcus radiodurans
Author: s. d. larsen, r. hawwa, k. ratia, b. d. santarsiero, a. d. mesecar
Keywords: bi-nuclear metal active-site, carboxylated lysine, hydrolase
- 2zho.pdb.
transferase 06-feb-08 2zho
Title: crystal structure of the regulatory subunit of aspartate kinase from thermus thermophilus (ligand free form)
Author: a. yoshida, t. tomita, t. kuzuyama, m. nishiyama
Keywords: act domain, alternative initiation, amino-acid biosynthesis, diaminopimelate biosynthesis, kinase, lysine biosynthesis, transferase
- 3a0i.pdb.
transferase 19-mar-09 3a0i
F Na
Title: human glucokinase in complex with a synthetic activator
Author: k. kamata, m. mitsuya
Keywords: diabetes, activator, alternative splicing, atp- binding, diabetes mellitus, disease mutation, glycolysis, kinase, nucleotide-binding, polymorphism, transferase
- 3boo.pdb.
toxin/toxin inhibitor 17-dec-07 3boo
Zn
Title: structure of the c. botulinum neurotoxin serotype a with an inhibitory peptide bound
Author: n. r. silvaggi, k. n. allen
Keywords: neurotoxin, metalloprotease, peptidic inhibitor, toxin/toxin inhibitor complex
- 3bwz.pdb.
structural protein 10-jan-08 3bwz
Cl
Title: crystal structure of the type ii cohesin module from the cellulosome of acetivibrio cellulolyticus with an extended linker conformation
Author: i. noach, r. lamed, l. j. w. shimon, e. bayer, f. frolow
Keywords: structural protein
- 3c3g.pdb.
de novo protein 28-jan-08 3c3g
Title: alpha/beta-peptide helix bundles: the gcn4-pli side chain sequence on an (alpha-alpha-beta) backbone
Author: w. s. horne, j. l. price, s. h. gellman
Keywords: foldamer, coiled coil, alpha/beta-peptide, unknown function, de novo protein
- 3c3h.pdb.
de novo protein 28-jan-08 3c3h
Title: alpha/beta-peptide helix bundles: a gcn4-pli analogue with an (alpha-alpha-beta) backbone and cyclic beta residues
Author: w. s. horne, j. l. price, s. h. gellman
Keywords: foldamer, alpha/beta-peptide, coiled coil, unknown function, de novo protein
- 3c3v.pdb.
allergen 28-jan-08 3c3v
Na
Title: crystal structure of peanut major allergen ara h 3
Author: t. jin, y. zhang
Keywords: allergy, ara h 3, glycinin
- 3cgq.pdb.
rna 06-mar-08 3cgq
Title: x-ray structure of a pseudouridine-containing yeast spliceosomal u2 snrna-intron branch site duplex
Author: y. lin, c. l. kielkopf
Keywords: branchpoint sequence, bps, u2 snrna, pseudouridine, pre-mrna splicing
- 3cjb.pdb.
structural protein 12-mar-08 3cjb
Ca
Title: actin dimer cross-linked by v. cholerae martx toxin and complexed with gelsolin-segment 1
Author: m. r. sawaya, d. s. kudryashov, i. pashkov, e. reisler, t. o. yeates
Keywords: calcium, disease mutation, polymorphism, secreted
- 3cjc.pdb.
structural protein/hydrolase 12-mar-08 3cjc
Ca
Title: actin dimer cross-linked by v. cholerae martx toxin and complexed with dnase i and gelsolin-segment 1
Author: m. r. sawaya, d. s. kudryashov, i. pashkov, e. reisler, t. o. yeates
Keywords: hydrolase, nuclease, nucleus, polymorphism, secreted, actin capping, alternative initiation, amyloid, disease mutation, structural protein/hydrolase complex
- 3cu9.pdb.
hydrolase 16-apr-08 3cu9
Ca
Title: high resolution crystal structure of 1,5-alpha-l-arabinanase from geobacillus stearothermophilus
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, high resolution, beta- propeller, geobacillus stearothermophilus
- 3d5y.pdb.
hydrolase 18-may-08 3d5y
Ca
Title: high resolution crystal structure of 1,5-alpha-arabinanase catalytic mutant (abnbe201a)
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, high resolution, beta- propeller, geobacillus stearothermophilus
- 3d5z.pdb.
hydrolase 18-may-08 3d5z
Ca
Title: crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (abnbe201a) complexed to arabinotriose
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, beta-propeller, geobacillus stearothermophilus
- 3d60.pdb.
hydrolase 18-may-08 3d60
Ca
Title: crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (d27a)
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, beta-propeller, geobacillus stearothermophilus
- 3d61.pdb.
hydrolase 18-may-08 3d61
Ca
Title: crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (abnbd147a) complexed to arabinobiose
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, beta-propeller, geobacillus stearothermophilus
- 3d89.pdb.
electron transport 22-may-08 3d89
Fe
Title: crystal structure of a soluble rieske ferredoxin from mus musculus
Author: e. j. levin, j. g. mccoy, n. l. elsen, k. d. seder, c. a. bingman, g. e. wesenberg, b. g. fox, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: electron transport
- 3dbn.pdb.
lyase 02-jun-08 3dbn
Mn
Title: crystal structure of the streptoccocus suis serotype2 d- mannonate dehydratase in complex with its substrate
Author: h. peng, q. zhang, f. gao, g. f. gao
Keywords: lyase
- 3dbp.pdb.
lyase 02-jun-08 3dbp
Title: crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with 6-nh2-ump
Author: y. liu, t. to, a. m. bello, l. p. kotra, e. f. pai
Keywords: pyrimidine biosynthesis, transferase
- 3dh8.pdb.
metal binding protein 17-jun-08 3dh8
Fe
Title: structure of pseudomonas quinolone signal response protein pqse
Author: s. yu, w. blankenfeldt
Keywords: pseudomonas quinolone signal, pqs, metal- beta-lactamase, iron, phosphodiesterase, metal binding protein
- 3div.pdb.
oxidoreductase 21-jun-08 3div
Cu
Title: crystal structure of laccase from cerrena maxima at 1.76a resolution
Author: a. v. lyashenko, y. n. zhukova, a. m. mikhailov
Keywords: x-ray analysis, multicopper- oxidase, oxidoreductase
- 3dnd.pdb.
transferase/transferase inhibitor 02-jul-08 3dnd
Title: camp-dependent protein kinase pka catalytic subunit with pki-5-24
Author: a. schiffer, k. u. wendt
Keywords: protein kinase inhibitor, transferase/transferase inhibitor complex
- 3dne.pdb.
transferase/transferase inhibitor 02-jul-08 3dne
Title: camp-dependent protein kinase pka catalytic subunit with pki-5-24
Author: a. schiffer, k. u. wendt
Keywords: protein kinase inhibitor, transferase/transferase inhibitor complex
- 3dod.pdb.
transferase 03-jul-08 3dod
Title: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis
Author: s. dey, j. c. sacchettini
Keywords: biotin biosynthesis, pyridoxal phosphate, s-adenosyl-l-methionine, transferase
- 3drd.pdb.
transferase 11-jul-08 3drd
Title: crystal structure of 7,8 diaminopelargonic acid synthase apoenzyme in bacillus subtilis
Author: s. dey, j. c. sacchettini
Keywords: biotin biosynthesis, pyridoxal phosphate, s-adenosyl-l-methionine, transferase
- 3drt.pdb.
immune system 11-jul-08 3drt
Title: crystal structure of the hiv-1 broadly neutralizing antibody 2f5 in complex with the gp41 scrambledfp-mper scrhyb3k construct gigafgllgflaagskk-ahx-k656neqelleldkwaslwn671
Author: j. -p. julien, s. bryson, b. g. de la torre, d. andreu, j. l. nieva, e. f. pai
Keywords: gp41, 2f5, nmab, immune system
- 3dt0.pdb.
blood clotting/hydrolase inhibitor 14-jul-08 3dt0
Cl Na
Title: understanding thrombin inhibition
Author: b. baum, a. heine, g. klebe
Keywords: secreted, serine protease, zymogen
- 3dtf.pdb.
transferase 15-jul-08 3dtf
Title: structural analysis of mycobacterial branched chain aminotransferase- implications for inhibitor design
Author: a. castell, t. unge
Keywords: aminotransferase, transferase
- 3dtg.pdb.
transferase 15-jul-08 3dtg
Title: structural analysis of mycobacterial branched chain aminotransferase- implications for inhibitor design
Author: a. castell, t. unge
Keywords: aminotransferase, transferase
- 3dth.pdb.
transferase 15-jul-08 3dth
Title: structural analysis of mycobacterial branched chain aminotransferase- implications for inhibitor design
Author: a. castell, t. unge
Keywords: aminotransferase, transferase
- 3du4.pdb.
transferase 16-jul-08 3du4
Title: crystal structure of 7-keto-8-aminopelargonic acid bound 7, 8-diaminopelargonic acid synthase in bacillus subtilis
Author: s. dey, j. c. sacchettini
Keywords: biotin biosynthesis, pyridoxal phosphate, s-adenosyl-l-methionine, 7-keto, 8-amino pelargonic acid
- 3dux.pdb.
blood clotting/hydrolase inhibitor 18-jul-08 3dux
Cl Na
Title: understanding thrombin inhibition
Author: b. baum, a. heine, g. klebe
Keywords: secreted, serine protease, zymogen
- 3dwb.pdb.
hydrolase 22-jul-08 3dwb
Zn
Title: structure of human ece-1 complexed with phosphoramidon
Author: c. oefner
Keywords: zinc, mch_ece_h_25a1_lt1.pdb
- 3e35.pdb.
unknown function 06-aug-08 3e35
Mg Se
Title: actinobacteria-specific protein of unknown function, sco1997
Author: b. gao, r. s. gupta, s. n. sugiman-marangos, m. s. junop
Keywords: actinobacteria-specific protein, conserved protein, unknown function
- 3e3a.pdb.
oxidoreductase 06-aug-08 3e3a
Title: the structure of rv0554 from mycobacterium tuberculosis
Author: j. m. johnston, e. n. baker
Keywords: oxidoreductase, peroxidase
- 3e6u.pdb.
signaling protein 16-aug-08 3e6u
Zn
Title: crystal structure of human lancl1
Author: w. zhang, g. zhu, x. li, z. rao, c. zhang
Keywords: cytoplasm, signaling protein
- 3e8r.pdb.
hydrolase 20-aug-08 3e8r
Zn
Title: crystal structure of catalytic domain of tace with hydroxamate inhibitor
Author: p. orth
Keywords: transmembrane, zinc, zymogen
- 3edz.pdb.
hydrolase 03-sep-08 3edz
Zn
Title: crystal structure of catalytic domain of tace with hydroxamate inhibitor
Author: r. d. mazzola, z. zhu, l. sinning, b. mckittrick, b. lavey, j. spitler, j. kozlowski, s. neng-yang, g. zhou, z. guo, p. orth, v. madison, j. sun, d. lundell, x. niu
Keywords: transmembrane, zinc, zymogen
- 3eki.pdb.
tpp binding protein 19-sep-08 3eki
Br Ca
Title: structural insights of the mycoplasma hyorhinis protein mh- p37: a putative thiamine pyrophosphate transporter
Author: k. h. sippel, a. h. robbins, r. reutzel, r. mckenna
Keywords: p37, tpp, cell membrane, lipoprotein, membrane, transport, transport protein, palmitate, extracytoplasmic thiamine binding lipoprotein, cypl, tpp binding protein
- 3et7.pdb.
signaling protein, transferase 07-oct-08 3et7
F
Title: crystal structure of pyk2 complexed with pf-2318841
Author: s. han
Keywords: alternative splicing, atp-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein, polymorphism, transferase, tyrosine-protein kinase, signaling protein
- 3etq.pdb.
transport protein 08-oct-08 3etq
Title: x-ray structure of cysteine-free fragment of mhcn2 c- terminal region from amino acids 443-630 including c508n, c584s, and c601s mutations
Author: g. e. flynn
Keywords: potassium channel, potassium transport, sodium, sodium channel, sodium transport, transmembrane, transport, voltage-gated channel, transport protein
- 3eu9.pdb.
protein binding, methyl-lysine-binding p09-oct-08 3eu9
Title: the ankyrin repeat domain of huntingtin interacting protein 14
Author: t. gao, r. e. collins, j. r. horton, r. zhang, x. zhang, x. cheng
Keywords: protein binding, methyl-lysine-binding protein
- 3eux.pdb.
hydrolase 12-oct-08 3eux
Title: crystal structure of crosslinked ribonuclease a
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3euy.pdb.
hydrolase 12-oct-08 3euy
Title: crystal structure of ribonuclease a in 50% dioxane
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3euz.pdb.
hydrolase 12-oct-08 3euz
Title: crystal structure of ribonuclease a in 50% dimethylformamide
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev0.pdb.
hydrolase 12-oct-08 3ev0
Title: crystal structure of ribonuclease a in 70% dimethyl sulfoxide
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev1.pdb.
hydrolase 12-oct-08 3ev1
Title: crystal structure of ribonuclease a in 70% hexanediol
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev2.pdb.
hydrolase 12-oct-08 3ev2
Title: crystal structure of ribonuclease a in 70% isopropanol
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev3.pdb.
hydrolase 12-oct-08 3ev3
Title: crystal structure of ribonuclease a in 70% t-butanol
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev4.pdb.
hydrolase 12-oct-08 3ev4
F
Title: crystal structure of ribonuclease a in 50% trifluoroethanol
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev5.pdb.
hydrolase 12-oct-08 3ev5
Title: crystal structure of ribonuclease a in 1m trimethylamine n- oxide
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3ev6.pdb.
hydrolase 12-oct-08 3ev6
Title: crystal structure of ribonuclease a in 50% r,s,r-bisfuranol
Author: m. dechene, g. wink, m. smith, p. swartz, c. mattos
Keywords: organic solvents, multiple solvent crystal structures, endonuclease, glycation, glycoprotein, hydrolase, nuclease, secreted
- 3exy.pdb.
electron transport 17-oct-08 3exy
Fe
Title: crystal structure of the 2[4fe-4s] ferredoxin v13g variant from allochromatium vinosum
Author: p. giastas, e. saridakis, i. m. mavridis
Keywords: ferredoxin, [4fe-4s] clusters, 4fe-4s, iron, iron-sulfur, metal-binding, transport
- 3eyy.pdb.
transport 22-oct-08 3eyy
Cl Zn Ni
Title: structural basis for the specialization of nur, a nickel- specific fur homologue, in metal sensing and dna recognition
Author: s. -s. cha, y. j. an
Keywords: nickel-uptake regulator, d-domain, dimerization domain, db-domain, dna-binding domain, transport
- 3f3t.pdb.
transferase 31-oct-08 3f3t
Title: kinase domain of csrc in complex with inhibitor rl38 (type iii)
Author: c. gruetter, s. klueter, m. getlik, d. rauh
Keywords: type iii, dfg-out, alternative splicing, atp- binding, kinase, lipoprotein, myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinas...
- 3f3u.pdb.
transferase 31-oct-08 3f3u
Title: kinase domain of csrc in complex with inhibitor rl37 (type iii)
Author: c. gruetter, s. klueter, m. getlik, d. rauh
Keywords: type iii, dfg-out, alternative splicing, atp- binding, kinase, lipoprotein, myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinas...
- 3f5f.pdb.
transport, transferase 03-nov-08 3f5f
Title: crystal structure of heparan sulfate 2-o-sulfotransferase from gallus gallus as a maltose binding protein fusion.
Author: h. n. bethea, d. xu, j. liu, l. c. pedersen
Keywords: fusion, heparan sulfate biosynthesis, sulfotransferase, glycoprotein, golgi apparatus, membrane, signal-anchor, transferase, transmembrane, periplasm, sugar transport, transport
- 3f6g.pdb.
transferase 06-nov-08 3f6g
Zn
Title: crystal structure of the regulatory domain of licms in complexed with isoleucine - type ii
Author: p. zhang, j. ma, g. zhao, j. ding
Keywords: allosteric regulation, feedback inhibition, selectivity, specificity, transferase, acyltransferase
- 3f6h.pdb.
transferase 06-nov-08 3f6h
Zn
Title: crystal structure of the regulatory domain of licms in complexed with isoleucine - type iii
Author: p. zhang, j. ma, g. zhao, j. ding
Keywords: allosteric regulation, feedback inhibition, selectivity, specificity, transferase, acyltransferase
- 3f74.pdb.
cell adhesion 07-nov-08 3f74
Mg
Title: crystal structure of wild type lfa1 i domain
Author: h. zhang, j. -h. wang
Keywords: lfa1, i domain, inactive conformation, wild type, alternative splicing, calcium, cell adhesion, glycoprotein, magnesium, membrane, polymorphism, receptor, transmembrane
- 3f78.pdb.
cell adhesion 07-nov-08 3f78
Cl Mg F
Title: crystal structure of wild type lfa1 i domain complexed with isoflurane
Author: h. zhang, j. -h. wang
Keywords: receptor, transmembrane
- 3f8n.pdb.
dna binding protein 13-nov-08 3f8n
Mn Zn
Title: crystal structure of perr-zn-mn
Author: d. a. k. traore, j. -l. ferrer, l. jacquamet, v. duarte, j. -m. latour
Keywords: helix-turn-helix, cytoplasm, dna- binding, manganese, oxidation, repressor, transcription, transcription regulation, zinc
- 3f8s.pdb.
hydrolase 13-nov-08 3f8s
F
Title: crystal structure of dipeptidyl peptidase iv in complex with inhibitor
Author: m. j. ammirati, s. liu, d. w. piotrowski
Keywords: complex, aminopeptidase, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, signal-anchor, transmembrane
- 3f96.pdb.
hydrolase 13-nov-08 3f96
Title: crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by sarin
Author: u. samanta, b. j. bahnson
Keywords: disease mutation, secreted
- 3f97.pdb.
hydrolase 13-nov-08 3f97
Title: crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by soman
Author: u. samanta, b. j. bahnson
Keywords: disease mutation, secreted
- 3f98.pdb.
hydrolase 13-nov-08 3f98
Title: crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by tabun
Author: u. samanta, b. j. bahnson
Keywords: disease mutation, secreted
- 3f9c.pdb.
hydrolase 13-nov-08 3f9c
Title: crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by diisopropylfluorophosphate
Author: u. samanta, b. j. bahnson
Keywords: diisopropylfluorophosphate, dfp, disease mutation, secreted
- 3fby.pdb.
cell adhesion 20-nov-08 3fby
Ca
Title: the crystal structure of the signature domain of cartilage oligomeric matrix protein.
Author: k. tan, j. lawler
Keywords: cartilage oligomeric matrix protein, signature domain, e4t3c5, calcium, cell adhesion, disease mutation, dwarfism, egf-like domain, glycoprotein, polymorphism, secreted
- 3fd4.pdb.
viral protein 24-nov-08 3fd4
Title: crystal structure of epstein-barr virus gp42 protein
Author: a. kirschner, t. jardetzky
Keywords: herpesvirus, virus entry, membrane fusion, host-virus interaction, lectin, membrane, transmembrane, viral protein
- 3fd9.pdb.
unknown function 25-nov-08 3fd9
Se
Title: crystal structure of the transcriptional anti-activator exsd from pseudomonas aeruginosa
Author: f. d. schubot
Keywords: transcription regulation, pseudomonas, repressor, type iii secretion, unknown function
- 3ffq.pdb.
metal transport 04-dec-08 3ffq
Br
Title: hcn2i 443-640 apo-state
Author: n. b. olivier
Keywords: phosphoprotein, potassium transport, sodium, sodium transport, transport, metal transport
- 3fgh.pdb.
transcription 06-dec-08 3fgh
Cl Na Cd
Title: human mitochondrial transcription factor a box b
Author: t. a. gangelhoff, p. mungalachetty, j. nix, m. e. a. churchill
Keywords: mitochondrial transcription, activator, dna- binding, mitochondrion, phosphoprotein, polymorphism, transcription, transcription regulation, transit peptide
- 3fi2.pdb.
transferase 10-dec-08 3fi2
Title: crystal structure of jnk3 with amino-pyrazole inhibitor, sr- 3451
Author: j. e. habel
Keywords: protein-inhibitor complex, alternative splicing, atp- binding, chromosomal rearrangement, cytoplasm, epilepsy, kinase, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase, transferase
- 3fi3.pdb.
transferase 10-dec-08 3fi3
F
Title: crystal structure of jnk3 with indazole inhibitor, sr-3737
Author: j. e. habel, d. duckett, p. lograsso
Keywords: protein-inhibitor complex, alternative splicing, atp- binding, chromosomal rearrangement, cytoplasm, epilepsy, kinase, nucleotide-binding, phosphoprotein, serine/threonine-protein kinase, transferase
- 3fie.pdb.
hydrolase, toxin/protein transport 11-dec-08 3fie
Zn
Title: crystal structure of clostridium botulinum neurotoxin serotype f catalytic domain with an inhibitor (inh1)
Author: r. agarwal, s. swaminathan
Keywords: bont f, vamp, inhibitor, complex structure, acetylation, cell junction, crystal structure, hydrolase, toxin/protein transport complex
- 3fii.pdb.
hydrolase, toxin/protein transport 11-dec-08 3fii
Zn
Title: crystal structure of clostridium botulinum neurotoxin serotype f catalytic domain with an inhibitor (inh2)
Author: r. agarwal, s. swaminathan
Keywords: bont f, vamp, inhibitor, complex structure, acetylation, cell junction, crystal structure, hydrolase, toxin/protein transport complex
- 3flu.pdb.
lyase 19-dec-08 3flu
Title: crystal structure of dihydrodipicolinate synthase from the pathogen neisseria meningitidis
Author: s. r. a. devenish, a. t. hadfield
Keywords: beta-alpha-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis, schiff base
- 3fmg.pdb.
immune system 22-dec-08 3fmg
Ca
Title: structure of rotavirus outer capsid protein vp7 trimer in complex with a neutralizing fab
Author: s. t. aoki, e. c. settembre, s. d. trask, h. b. greenberg, s. c. harrison, p. r. dormitzer
Keywords: immune system
- 3fmt.pdb.
replication inhibitor/dna 22-dec-08 3fmt
Title: crystal structure of seqa bound to dna
Author: y. s. chung, t. brendler, s. austin, a. guarne
Keywords: hemimethylated gatc, dna replication, sequestration, dna replication inhibitor, dna-binding, replication inhibitor/dna complex
- 3fn0.pdb.
immune system 22-dec-08 3fn0
Title: crystal structure of hiv-1 neutralizing human fab z13e1 in complex with a 12-residue peptide containing the z13e1 epitope on gp41
Author: r. pejchal, i. a. wilson, m. b. zwick
Keywords: z13, hiv, env, gp41, immune system
- 3fnk.pdb.
structural protein 25-dec-08 3fnk
Title: crystal structure of the second type ii cohesin module from the cellulosomal adaptor scaa scaffoldin of acetivibrio cellulolyticus
Author: i. noach, f. frolow, e. a. bayer
Keywords: dockerin-binding module, beta barrel, alpha helix, beta flaps, structural protein
- 3fo4.pdb.
rna 27-dec-08 3fo4
Cl Co
Title: crystal structure of guanine riboswitch c74u mutant bound to 6-chloroguanine
Author: s. d. gilbert, r. t. batey
Keywords: riboswitch, 6-chloroguanine, adenine, rna-ligand complex, double helix, three-way junction
- 3fo6.pdb.
rna 28-dec-08 3fo6
Co
Title: crystal structure of guanine riboswitch bound to 6-o- methylguanine
Author: s. d. gilbert, f. e. reyes, r. t. batey
Keywords: mrna, guanine, 6-o-methylguanine, rna-ligand complex, double helix, three-way junction
- 3foe.pdb.
isomerase/dna 30-dec-08 3foe
Cl F
Title: structural insight into the quinolone-dna cleavage complex of type iia topoisomerases
Author: i. laponogov, m. k. sohi, d. a. veselkov, x. -s. pan, r. sawhney, a. w. thompson, k. e. mcauley, l. m. fisher, m. r. sanderson
Keywords: topoisomerase, dna, protein-dna cleavage complex, streptococcus pneumoniae, clinafloxacin, cell membrane, dna-binding, isomerase, membrane, atp-binding, nucleotide- binding, isomerase/dna complex
- 3fof.pdb.
isomerase/dna 30-dec-08 3fof
F
Title: structural insight into the quinolone-dna cleavage complex of type iia topoisomerases
Author: i. laponogov, m. k. sohi, d. a. veselkov, x. -s. pan, r. sawhney, a. w. thompson, k. e. mcauley, l. m. fisher, m. r. sanderson
Keywords: topoisomerase, dna, protein-dna cleavage complex, streptococcus pneumoniae, moxifloxacin, cell membrane, dna- binding, isomerase, membrane, atp-binding, nucleotide- binding, isomerase/dna complex
- 3fq4.pdb.
cell adhesion 07-jan-09 3fq4
Title: crystal structure of the calx-beta domain of integrin beta4
Author: n. alonso-garcia, a. ingles-prieto, j. m. de pereda
Keywords: integrin, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane, phosphoprotein, polymorphism, receptor, transmembrane
- 3fs5.pdb.
transferase 09-jan-09 3fs5
Title: crystal structure of saccharomyces cerevisiae ygr203w, a homolog of single-domain rhodanese and cdc25 phosphatase catalytic domain
Author: h. k. yeo, j. y. lee
Keywords: transferase
- 3fso.pdb.
cell adhesion 11-jan-09 3fso
Title: crystal structure of the calx-beta domain of integrin beta4, calcium soak
Author: n. alonso-garcia, a. ingles-prieto, j. m. de pereda
Keywords: integrin, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane, phosphoprotein, polymorphism, receptor, transmembrane
- 3fsx.pdb.
transferase 12-jan-09 3fsx
Mg Na
Title: structure of tetrahydrodipicolinate n-succinyltransferase (rv1201c; dapd) from mycobacterium tuberculosis
Author: l. schuldt, s. weyand, g. kefala, m. s. weiss
Keywords: l beta h domain, acyltransferase
- 3fsy.pdb.
transferase 12-jan-09 3fsy
Mg Na
Title: structure of tetrahydrodipicolinate n-succinyltransferase (rv1201c;dapd) in complex with succinyl-coa from mycobacterium tuberculosis
Author: l. schuldt, s. weyand, g. kefala, m. s. weiss
Keywords: l beta h domain, acyltransferase
- 3fyr.pdb.
transferase inhibitor 23-jan-09 3fyr
Se
Title: crystal structure of the sporulation histidine kinase inhibitor sda from bacillus subtilis
Author: d. a. jacques, m. streamer, g. f. king, j. m. guss, j. trewhella, d. b. langley
Keywords: histidine kinase inhibitor, sporulation regulation, alternative initiation, protein kinase inhibitor, sporulation, transferase inhibitor
- 3g18.pdb.
lyase 29-jan-09 3g18
Title: crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: pyrimidine biosynthesis, lyase
- 3g1a.pdb.
lyase 29-jan-09 3g1a
Title: crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: 6-azaump, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1d.pdb.
lyase 29-jan-09 3g1d
Title: crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with uridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: ump, crystal structure, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1f.pdb.
lyase 29-jan-09 3g1f
Title: crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 5,6-dihydroorotidine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: h2-omp, crystal structure, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1h.pdb.
lyase 29-jan-09 3g1h
Title: crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 5,6-dihydrouridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: h2-ump, crystal structure, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1s.pdb.
lyase 30-jan-09 3g1s
Title: crystal structure of the mutant d70g of orotidine 5'- monophosphate decarboxylase from methanobacterium thermoautotrophicum
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: d70g, crystal structure, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1v.pdb.
lyase 30-jan-09 3g1v
Cl F
Title: crystal structure of the mutant d70g of orotidine 5'- monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 5-fluorouridine 5'- monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: d70g, 5- fluorouridine 5'-monophosphate, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1x.pdb.
lyase 30-jan-09 3g1x
Cl
Title: crystal structure of the mutant d70g of orotidine 5'- monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with uridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: ump, crystal structure, decarboxylase, pyrimidine biosynthesis, lyase
- 3g1y.pdb.
lyase 30-jan-09 3g1y
Title: crystal structure of the mutant d70n of orotidine 5'- monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with sulfate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: d70n, crystal structure, decarboxylase, pyrimidine biosynthesis, lyase
- 3g22.pdb.
lyase 30-jan-09 3g22
Title: crystal structure of the mutant d70n of orotidine 5'- monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with uridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: d70n, ump, decarboxylase, pyrimidine biosynthesis, lyase
- 3g24.pdb.
lyase 30-jan-09 3g24
Title: crystal structure of the mutant d70n of orotidine 5'- monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 6-azauridine 5'- monophosphate
Author: a. a. fedorov, e. v. fedorov, k. k. chan, j. a. gerlt, s. c. almo
Keywords: 6-azaump, d70n, decarboxylase, pyrimidine biosynthesis, lyase
- 3g39.pdb.
immune system 02-feb-09 3g39
Title: structure of a lamprey variable lymphocyte receptor
Author: l. deng, c. a. velikovsky, r. a. mariuzza
Keywords: antibody, x-ray, crystallography, immune system
- 3g3a.pdb.
hydrolase/immune system 02-feb-09 3g3a
Title: structure of a lamprey variable lymphocyte receptor in complex with a protein antigen
Author: l. deng, c. a. velikovsky, r. a. mariuzza
Keywords: antibody, x-ray, crystallography, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, hydrolase/immune system complex
- 3g3b.pdb.
hydrolase/immune system 02-feb-09 3g3b
Title: structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Author: l. deng, c. a. velikovsky, r. a. mariuzza
Keywords: antibody, x-ray, crystallography, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, hydrolase/immune system complex
- 3g3e.pdb.
oxidoreductase 02-feb-09 3g3e
Title: crystal structure of human d-amino acid oxidase in complex with hydroxyquinolin-2(1h)
Author: a. duplantier, s. liu
Keywords: fad, flavoprotein, oxidoreductase, peroxisome
- 3g4f.pdb.
lyase 03-feb-09 3g4f
Mg F
Title: crystal structure of (+)- -cadinene synthase from gossypium arboreum in complex with 2-fluorofarnesyl diphosphate
Author: h. a. gennadios, l. di costanzo, d. w. christianson
Keywords: lyase, magnesium, metal-binding
- 3g4m.pdb.
rna 04-feb-09 3g4m
Co
Title: crystal structure of guanine riboswitch bound to 2- aminopurine
Author: s. d. gilbert, r. t. batey
Keywords: mrna, 2-aminopurine, guanine, three-way junction, rna-ligand complex, double helix, base-triple.
- 3g5w.pdb.
metal binding protein 05-feb-09 3g5w
Cu
Title: crystal structure of blue copper oxidase from nitrosomonas europaea
Author: t. j. lawton, l. a. sayavedra-soto, d. j. arp, a. c. rosenzweig
Keywords: multicopper oxidase, laccase, nitrifier, metal binding protein
- 3g7v.pdb.
sugar binding protein, hormone 10-feb-09 3g7v
Title: islet amyloid polypeptide (iapp or amylin) fused to maltose binding protein
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: periplasm, sugar transport, transport, amidation, amyloid, cleavage on pair of basic residues, hormone, polymorphism, secreted, sugar binding protein
- 3g7w.pdb.
sugar binding protein, hormone 11-feb-09 3g7w
Title: islet amyloid polypeptide (iapp or amylin) residues 1 to 22 fused to maltose binding protein
Author: j. j. w. wiltzius, m. r. sawaya, d. eisenberg
Keywords: periplasm, sugar transport, transport, amidation, amyloid, cleavage on pair of basic residues, hormone, polymorphism, secreted, sugar binding protein
- 3gao.pdb.
rna 18-feb-09 3gao
Co Mg
Title: crystal structure of the guanine riboswitch bound to xanthine.
Author: s. d. gilbert, r. t. batey
Keywords: guanine, xanthine, mrna, rna_ligand complex, three-way junction
- 3gba.pdb.
membrane protein 19-feb-09 3gba
Cl
Title: x-ray structure of iglur5 ligand-binding core (s1s2) in complex with dysiherbaine at 1.35a resolution
Author: k. frydenvang, p. naur, m. gajhede, j. s. kastrup
Keywords: iglur5, ligand-binding core, x-ray, agonist, membrane protein
- 3gbb.pdb.
membrane protein 19-feb-09 3gbb
Title: x-ray strucutre of iglur5 ligand-binding core (s1s2) in complex with msviii-19 at 2.10a resolution
Author: k. frydenvang, p. naur, m. gajhede, j. s. kastrup
Keywords: iglur5, ligand-binding core, x-ray, weak agonist, membrane protein
- 3gdh.pdb.
transferase 24-feb-09 3gdh
Title: methyltransferase domain of human trimethylguanosine synthase 1 (tgs1) bound to m7gtp and adenosyl-homocysteine (active form)
Author: t. monecke, a. dickmanns, r. ficner
Keywords: cap, dimethyltransferase, usnrna, snorna, telomerase, cytoplasm, methyltransferase, nucleus, phosphoprotein, polymorphism, transcription, transcription regulation, transferase
- 3gdk.pdb.
lyase 24-feb-09 3gdk
Title: crystal structure of the orotidine 5'-monophosphate decarboxylase from saccharomyces cerevisiae
Author: a. a. fedorov, e. v. fedorov, b. m. wood, j. a. gerlt, s. c. almo
Keywords: saccharomyces cerevisiae, crystal structure, decarboxylase, lyase, phosphoprotein, pyrimidine biosynthesis, ubl conjugation
- 3gdl.pdb.
lyase 24-feb-09 3gdl
Title: crystal structure of the orotidine 5'-monophosphate decarboxylase from saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, b. m. wood, j. a. gerlt, s. c. almo
Keywords: saccharomyces cerevisiae, 6-azauridine 5'-monophosphate, crystal structure, decarboxylase, lyase, phosphoprotein, pyrimidine biosynthesis, ubl conjugation
- 3gdr.pdb.
lyase 24-feb-09 3gdr
Title: crystal structure of the d91n mutant of the orotidine 5'- monophosphate decarboxylase from saccharomyces cerevisiae
Author: a. a. fedorov, e. v. fedorov, b. m. wood, j. a. gerlt, s. c. almo
Keywords: saccharomyces cerevisiae, d91n mutant, crystal structure, decarboxylase, lyase, phosphoprotein, pyrimidine biosynthesis, ubl conjugation
- 3gdt.pdb.
lyase 24-feb-09 3gdt
Title: crystal structure of the d91n mutant of the orotidine 5'- monophosphate decarboxylase from saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate
Author: a. a. fedorov, e. v. fedorov, b. m. wood, j. a. gerlt, s. c. almo
Keywords: d91n mutant, 6- azauridine 5'-monophosphate, crystal structure, decarboxylase, lyase, phosphoprotein, pyrimidine biosynthesis, ubl conjugation
- 3ger.pdb.
rna 25-feb-09 3ger
Cl Co
Title: guanine riboswitch bound to 6-chloroguanine
Author: s. d. gilbert, r. t. batey
Keywords: mrna, guanine, rna-ligand complex, double helix, three-way junction, base triple
- 3ges.pdb.
rna 26-feb-09 3ges
Co
Title: crystal structure of the guanine riboswitch c74u mutant bound to 6-o-methylguanine
Author: s. d. gilbert, r. t. batey
Keywords: mrna, guanine, rna-ligand complex, double helix, three-way junction, base triple
- 3gfx.pdb.
hydrolase, signaling protein 27-feb-09 3gfx
Ca
Title: klebsiella pneumoniae blrp1 ph 4.5 calcium/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: bluf-domain, eal-domain, hydrolase, signaling protein
- 3gfy.pdb.
hydrolase, signaling protein 27-feb-09 3gfy
Title: klebsiella pneumoniae blrp1 with fmn and cyclic digmp, no metal ions
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: eal domain, bluf domain, hydrolase, signaling protein
- 3gfz.pdb.
hydrolase, signaling protein 27-feb-09 3gfz
Mn
Title: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: eal domain, bluf domain, hydrolase, signaling protein
- 3gg0.pdb.
hydrolase, signaling protein 27-feb-09 3gg0
Mn
Title: klebsiella pneumoniae blrp1 ph 9.0 manganese/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: eal domain, bluf domain, hydrolase, signaling protein
- 3gg1.pdb.
hydrolase, signaling protein 27-feb-09 3gg1
Ca
Title: klebsiella pneumoniae blrp1 ph 8.0 calcium/cy-digmp complex
Author: t. barends, e. hartmann, j. griese, t. beitlich, n. kirienko, d. ryjenkov, j. reinstein, r. shoeman, m. gomelsky, i. schlichting
Keywords: bluf domain, eal domain, hydrolase, signaling protein
- 3ghp.pdb.
structural protein 04-mar-09 3ghp
Title: structure of the second type ii cohesin module from the adaptor scaa scaffoldin of acetivibrio cellulolyticus (including long c-terminal linker)
Author: i. noach, f. frolow, e. a. bayer
Keywords: beta barrel, alpha helix, beta flaps, structural protein
- 3giz.pdb.
immune system 07-mar-09 3giz
Zn
Title: crystal structure of the fab fragment of anti-cd20 antibody ofatumumab
Author: j. du, h. yang, j. ding
Keywords: 2f2, ofatumumab, hu-maxcd20, fab, antibody, fully human antibody, immune system
- 3gni.pdb.
signaling protein/signaling protein 17-mar-09 3gni
Title: structure of strad and mo25
Author: e. zeqiraj, s. goldie, d. r. alessi, d. m. f. van aalten
Keywords: polymorphism, transferase, metal binding protein/transferase complex, signaling protein/signaling protein complex
- 3gog.pdb.
rna 19-mar-09 3gog
Cl Co
Title: guanine riboswitch a21g,u75c mutant bound to 6-chloroguanine
Author: s. d. gilbert, r. t. batey
Keywords: mrna, guanine, rna-ligand complex, double helix, three-way junction, base triple
- 3got.pdb.
rna 20-mar-09 3got
Co F
Title: guanine riboswitch c74u mutant bound to 2-fluoroadenine.
Author: s. d. gilbert, f. e. reyes, r. t. batey
Keywords: mrna, guanine, rna-ligand complex, double helix, base triple, three-way junction
- 3grh.pdb.
hydrolase 25-mar-09 3grh
Title: crystal structure of escherichia coli ybhc
Author: j. m. eklof, t. c. tan, c. divne, h. brumer
Keywords: beta-helix, periplasmic, lipoprotein, outer membrane, e.coli, carbohydrate esterase family 8, aspartyl esterase, cell membrane, cell outer membrane, hydrolase, membrane, palmitate
- 3gv2.pdb.
viral protein 30-mar-09 3gv2
Title: x-ray structure of hexameric hiv-1 ca
Author: b. n. kelly
Keywords: viral protein
- 3gw5.pdb.
hydrolase/hydrolase inhibitor 31-mar-09 3gw5
Cl
Title: crystal structure of human renin complexed with a novel inhibitor
Author: z. wu, b. m. mckeever
Keywords: glycoprotein, hydrolase, membrane, polymorphism, protease, secreted, zymogen, hydrolase/hydrolase inhibitor complex
- 3gyq.pdb.
transferase 04-apr-09 3gyq
Title: structure of the thiostrepton-resistance methyltransferase s-adenosyl-l-methionine complex
Author: m. s. dunstan, g. l. conn
Keywords: spout mtases, sam, trefoil knot, antibiotic resistance, methyltransferase, s-adenosyl-l- methionine, transferase
- 3gze.pdb.
hydrolase 07-apr-09 3gze
Zn
Title: algal prolyl 4-hydroxylase complexed with zinc and (ser- pro)5 peptide substrate
Author: m. k. koski, r. k. wierenga
Keywords: double-stranded beta-helix, proline-rich peptide, poly-(l-proline) type ii helix, hydrolase
- 3h0a.pdb.
transcription 08-apr-09 3h0a
F
Title: crystal structure of peroxisome proliferator-activated receptor gamma (pparg) and retinoic acid receptor alpha (rxra) in complex with 9-cis retinoic acid, co-activator peptide, and a partial agonist
Author: z. wang, a. sudom, n. p. walker
Keywords: transferase
- 3h0t.pdb.
immune system/antimicrobial protein 10-apr-09 3h0t
Title: hepcidin-fab complex
Author: r. syed, v. li
Keywords: antibiotic, antimicrobial, cleavage on pair of basic residues, disease mutation, disulfide bond, fungicide, hormone, secreted, immune system/antimicrobial protein complex
- 3h47.pdb.
viral protein 18-apr-09 3h47
Title: x-ray structure of hexameric hiv-1 ca
Author: o. pornillos
Keywords: hexamer, engineered disulfide bonds, viral protein
- 3h4e.pdb.
viral protein 19-apr-09 3h4e
Title: x-ray structure of hexameric hiv-1 ca
Author: o. pornillos
Keywords: hexamer, engineered disulfide bonds, viral protein
- 3h6a.pdb.
cell adhesion 23-apr-09 3h6a
Title: structure of the calx-beta domain of integrin beta4 crystallized in the presence of calcium
Author: n. alonso-garcia, a. ingles-prieto, j. m. de pereda
Keywords: integrin, cell adhesion, epidermolysis bullosa, glycoprotein, membrane, receptor, transmembrane, alternative splicing, disease mutation, disulfide bond, phosphoprotein, polymorphism
- 3h8h.pdb.
transcription 29-apr-09 3h8h
Cl
Title: structure of the c-terminal domain of human rnf2/ring1b;
Author: j. r. walker, i. bezsonova, j. bacik, s. duan, j. weigelt, c. bountra, a. m. edwards, c. h. arrowsmith, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: repressor, transcription, transcription regulation complex, nucleus, phosphoprotein, zinc, zinc-finger, structural genomics, structural genomics consortium, sgc
- 3h8i.pdb.
oxidoreductase 29-apr-09 3h8i
Title: the first x-ray structure of a sulfide:quinone oxidoreductase: insights into sulfide oxidation mechanism
Author: j. a. brito, f. l. sousa, m. stelter, t. m. bandeiras, c. vonrhein, m. teixeira, m. m. pereira, m. archer
Keywords: rossman-like fold, oxidoreductase
- 3h8l.pdb.
oxidoreductase 29-apr-09 3h8l
Title: the first x-ray structure of a sulfide:quinone oxidoreductase: insights into sulfide oxidation mechanism
Author: j. a. brito, f. l. sousa, m. stelter, t. m. bandeiras, c. vonrhein, m. teixeira, m. m. pereira, m. archer
Keywords: complete form, rossman-like fold, oxidoreductase
- 3hax.pdb.
isomerase/biosynthetic protein/rna 03-may-09 3hax
Mg F Zn
Title: crystal structure of a substrate-bound gar1-minus h/aca rnp from pyrococcus furiosus
Author: k. ye
Keywords: isomerase/biosynthetic protein/rna complex
- 3hay.pdb.
isomerase/biosynthetic protein/rna 03-may-09 3hay
F Zn
Title: crystal structure of a substrate-bound full h/aca rnp from pyrococcus furiosus
Author: k. ye
Keywords: isomerase/biosynthetic protein/rna complex
- 3hb3.pdb.
oxidoreductase 04-may-09 3hb3
Cu Mn Fe Ca
Title: high resolution crystal structure of paracoccus denitrificans cytochrome c oxidase
Author: j. koepke, h. angerer, g. peng
Keywords: metal-binding, oxidoreductase, respiratory chain, transmembrane, transport, pyrrolidone carboxylic acid
- 3hbr.pdb.
hydrolase 05-may-09 3hbr
Title: crystal structure of oxa-48 beta-lactamase
Author: v. calderone, s. mangani, m. benvenuti, g. m. rossolini, j. d. docquier
Keywords: oxa-48, antibiotic, dimer, hydrolase
- 3hed.pdb.
transferase/dna 08-may-09 3hed
Mg
Title: structure of human dna polymerase kappa inserting datp opposite an 8-oxog dna lesion
Author: t. d. silverstein, r. vasquez-del carpio, a. k. aggarwal
Keywords: phosphoprotein, polymorphism, schiff base, transferase, zinc, zinc-finger, transferase/dna complex
- 3hff.pdb.
oxidoreductase 11-may-09 3hff
Zn
Title: monomeric human cu,zn superoxide dismutase without zn ligands
Author: k. saraboji, a. nordlund, l. leinartait, m. oliveberg, d. t. logan
Keywords: zinc
- 3hft.pdb.
biosynthetic protein 12-may-09 3hft
Zn Se
Title: crystal structure of wbms, polysaccharide deacetylase involved in o-antigen biosynthesis (np_886680.1) from bordetella bronchiseptica at 1.90 a resolution
Author: joint center for structural genomics, joint center for structural genomics (jcsg)
Keywords: wbms, polysaccharide deacetylase involved in o- antigen biosynthesis, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, biosynthetic protein
- 3hgk.pdb.
transferase 14-may-09 3hgk
Title: crystal structure of effect protein avrptob complexed with kinase pto
Author: j. dong, f. fan, l. gu, j. chai
Keywords: transferase
- 3hgl.pdb.
ligase 14-may-09 3hgl
Se
Title: crystal of avrptob 121-205
Author: j. dong, f. xiao, f. fan, l. gu, h. cang, g. b. martin, j. chai
Keywords: hypersensitive response elicitation, ligase, secreted, ubl conjugation, ubl conjugation pathway, virulence
- 3hha.pdb.
hydrolase 15-may-09 3hha
Title: crystal structure of cathepsin l in complex with az12878478
Author: n. asaad, p. a. bethel, m. d. coulson, j. dawson, s. j. ford, s. gerhardt, m. grist, g. a. hamlin, m. j. james, e. v. jones, g. i. karoutchi, p. w. kenny, a. d. morley, k. oldham, n. rankine, d. ryan, s. l. wells, l. wood, m. augustin, s. krapp, h. simader, s. steinbacher
Keywords: cathepsin l, inhibitors, disulfide bond, glycoprotein, hydrolase, lysosome, protease, thiol protease, zymogen
- 3hjw.pdb.
isomerase/rna 22-may-09 3hjw
F K Zn
Title: structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate rna
Author: b. liang, j. zhou, e. kahen, r. m. terns, m. p. terns, h. li
Keywords: ribosome biogenesis, rrna processing, ribosomal protein, rna-binding, isomerase/rna complex
- 3hjy.pdb.
isomerase/rna 22-may-09 3hjy
Title: structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate rna
Author: b. liang, j. zhou, e. kahen, r. m. terns, m. p. terns, h. li
Keywords: ribosome biogenesis, rrna processing, isomerase/rna complex
- 3hlk.pdb.
hydrolase 27-may-09 3hlk
Se
Title: crystal structure of human mitochondrial acyl-coa thioesterase (acot2)
Author: c. r. mandel, b. tweel, l. tong
Keywords: alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase, transit peptide
- 3hm4.pdb.
signaling protein 28-may-09 3hm4
Se
Title: crystal structure of chemotaxis protein chex (yp_386777.1) from desulfovibrio desulfuricans g20 at 1.30 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: chemotaxis protein chex, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function, signaling protein
- 3hme.pdb.
signaling protein 29-may-09 3hme
Title: crystal structure of human bromodomain containing 9 isoform 1 (brd9)
Author: p. filippakopoulos, j. eswaran, t. keates, s. picaud, a. roos, a. chaikuad, f. von delft, c. h. arrowsmith, a. edwards, j. weigelt, c. bountra, s. knapp
Keywords: structural genomics consortium, sgc, signaling protein
- 3hmf.pdb.
transcription 29-may-09 3hmf
Cl Zn
Title: crystal structure of the second bromodomain of human poly- bromodomain containing protein 1 (pb1)
Author: p. filippakopoulos, s. picaud, t. keates, j. muniz, f. von delft, c. h. arrowsmith, a. edwards, j. weigelt, c. bountra, s. knapp
Keywords: transcription regulation, structural genomics, structural genomics consortium, sgc
- 3hmh.pdb.
transcription 29-may-09 3hmh
Title: crystal structure of the second bromodomain of human tbp- associated factor rna polymerase 1-like (taf1l)
Author: p. filippakopoulos, s. picaud, t. keates, y. zhang, a. c. w. pike, f. von delft, c. h. arrowsmith, a. edwards, j. weigelt, c. bountra, s. knapp
Keywords: taf2a2, structural genomics consortium, sgc, bromodomain, cell cycle, disulfide bond, dna-binding, nucleus, polymorphism, transcription, transcription regulation
- 3hmm.pdb.
transferase 29-may-09 3hmm
Title: structure of alk5 + gw855857
Author: w. smith, c. janson
Keywords: phosphoprotein polymorphism, receptor, serine/threonine-protein kinase, transferase, transmembrane
- 3hn5.pdb.
structural genomics, unknown function 29-may-09 3hn5
Se
Title: crystal structure of bf0290 (yp_210027.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: bf0290, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3hnn.pdb.
oxidoreductase 31-may-09 3hnn
Se
Title: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-254) from nostoc sp. pcc 7120, northeast structural genomics consortium target nsr435a
Author: a. kuzin, m. abashidze, j. seetharaman, j. janjua, r. xiao, e. l. foote, c. ciccosanti, h. wang, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: psi-2, protein structure initiative, northeast structural genomics consortium, nesg, nsr435a, dfa5, electron transport, oxidoreductase, transport
- 3hnr.pdb.
transferase 31-may-09 3hnr
Title: crystal structure of a probable methyltransferase bt9727_4108 from bacillus thuringiensis subsp. northeast structural genomics consortium target id bur219
Author: j. seetharaman, h. neely, s. sahdev, h. janjua, r. xiao, c. ciccosanti, e. l. foote, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, methyltransferase, s-adenosyl-l- methionine, transferase
- 3hnu.pdb.
sugar binding protein 01-jun-09 3hnu
Title: crystal structure of a designed cyanovirin-n homolog lectin; lkamg in p21 space group
Author: l. m. i koharudin, w. furey, a. m. gronenborn
Keywords: cvnh, lectin, sugar binding protein
- 3hnx.pdb.
sugar binding protein 01-jun-09 3hnx
Title: crystal structure of a designed cyanovirin-n homolog lectin; lkamg in p212121 space group
Author: l. m. i. koharudin, w. furey, a. m. gronenborn
Keywords: cvnh, lectin, sugar binding protein
- 3ho3.pdb.
signaling protein 01-jun-09 3ho3
Title: crystal structure of hedgehog-interacting protein (hhip)
Author: i. bosanac, s. g. hymowitz
Keywords: six-bladed-propeller domain, egf domain, disulfide bond, alternative splicing, cell membrane, cytoplasm, egf-like domain, glycoprotein, membrane, polymorphism, secreted, signaling protein
- 3ho4.pdb.
signaling protein 01-jun-09 3ho4
Se
Title: crystal structure of hedgehog-interacting protein (hhip)
Author: s. g. hymowitz, i. bosanac
Keywords: six-bladed-propeller domain, egf domain, disulfide bond, alternative splicing, cell membrane, cytoplasm, egf-like domain, glycoprotein, membrane, polymorphism, secreted, signaling protein
- 3ho5.pdb.
signaling protein 01-jun-09 3ho5
Zn Ca
Title: crystal structure of hedgehog-interacting protein (hhip) and sonic hedgehog (shh) complex
Author: s. g. hymowitz, i. bosanac
Keywords: autocatalytic cleavage, developmental protein, disease mutation, holoprosencephaly, hydrolase, lipoprotein, microphthalmia, palmitate, protease, signaling protein
- 3ho6.pdb.
toxin 01-jun-09 3ho6
Title: structure-function analysis of inositol hexakisphosphate- induced autoprocessing in clostridium difficile toxin a
Author: r. n. pruitt, d. b. lacy
Keywords: enterotoxin, toxin
- 3hoi.pdb.
oxidoreductase 02-jun-09 3hoi
Se
Title: crystal structure of fmn-dependent nitroreductase bf3017 from bacteroides fragilis nctc 9343 (yp_212631.1) from bacteroides fragilis nctc 9343 at 1.55 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: fmn-dependent nitroreductase bf3017 from bacteroides fragilis nctc 9343, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, oxidoreductase
- 3hp0.pdb.
lyase 03-jun-09 3hp0
Se
Title: crystal structure of a putative polyketide biosynthesis enoyl-coa hydratase (pksh) from bacillus subtilis
Author: l. satyanarayana, s. eswaramoorthy, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: enoyl coa hydratase,isomerase, antibiotic biosynthesis,11251f,psi2,nysgxrc, lyase, structural genomics, protein structure initiative, new york sgx research center for structural genomics
- 3hp8.pdb.
sugar binding protein 03-jun-09 3hp8
Title: crystal structure of a designed cyanovirin-n homolog lectin; lkamg, bound to sucrose
Author: l. m. i. koharudin, w. furey, a. m. gronenborn
Keywords: cvnh, lectin, carbohydrate, sucrose, sugar binding protein
- 3hpb.pdb.
protein transport 03-jun-09 3hpb
Cl Se
Title: crystal structure of snx5-px domain in p212121 space group
Author: l. m. i. koharudin, w. furey, a. m. gronenborn
Keywords: snx5, phox, phosphatidylinositol, pi(4,5)p2, protein transport
- 3hpc.pdb.
protein transport 03-jun-09 3hpc
Cl
Title: crystal structure of snx5-px domain in p21 space group
Author: l. m. i. koharudin, w. furey, a. m. gronenborn
Keywords: snx5, phox, snx5-px, phosphatidylinositol, pi(4,5)p2, cell adhesion, protein transport
- 3hrg.pdb.
structural genomics, unknown function 09-jun-09 3hrg
Se
Title: crystal structure of bacteroides thetaiotaomicron bt_3980, protein with actin-like atpase fold and unknown function (np_812891.1) from bacteriodes thetaiotaomicron vpi-5482 at 1.85 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: unknown function
- 3hrs.pdb.
transcription 09-jun-09 3hrs
Title: crystal structure of the manganese-activated repressor scar: apo form
Author: k. e. stoll, w. e. draper, j. i. kliegman, m. v. golynskiy, r. a. t. brew- appiah, h. k. brown, w. a. breyer, n. s. jakubovics, h. f. jenkinson, r. b. brennan, s. m. cohen, a. glasfeld
Keywords: transcription
- 3hrt.pdb.
transcription 09-jun-09 3hrt
Cd
Title: crystal structure of scar with bound cd2+
Author: k. e. stoll, w. e. draper, j. i. kliegman, m. v. golynskiy, r. a. t. brew- appiah, h. k. brown, w. a. breyer, n. s. jakubovics, h. f. jenkinson, r. b. brennan, s. m. cohen, a. glasfeld
Keywords: transcription
- 3hru.pdb.
transcription 09-jun-09 3hru
Zn
Title: crystal structure of scar with bound zn2+
Author: k. e. stoll, w. e. draper, j. i. kliegman, m. v. golynskiy, r. a. t. brew- appiah, h. k. brown, w. a. breyer, n. s. jakubovics, h. f. jenkinson, r. b. brennan, s. m. cohen, a. glasfeld
Keywords: transcription
- 3hrw.pdb.
oxygen transport 10-jun-09 3hrw
Fe
Title: crystal structure of hemoglobin from mouse (mus musculus)at 2.8
Author: s. s. sundaresan, p. ramesh, m. n. ponnuswamy
Keywords: iron, metal-binding, oxygen transport, polymorphism, transport, phosphoprotein
- 3hrx.pdb.
lyase 10-jun-09 3hrx
Title: crystal structure of phenylacetic acid degradation protein paag
Author: t. kichise, t. hisano, k. takeda, k. miki
Keywords: the crotonase superfamily, lyase
- 3hs3.pdb.
transcription regulator 10-jun-09 3hs3
Title: crystal structure of periplasmic binding ribose operon repressor protein from lactobacillus acidophilus
Author: r. agarwal, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: transcription, transcription regulation, transcription regulator
- 3hsa.pdb.
structural genomics, unknown function 10-jun-09 3hsa
Se
Title: crystal structure of pleckstrin homology domain (yp_926556.1) from shewanella amazonensis sb2b at 1.99 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: pleckstrin homology domain, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, protein of unknown function (duf1696), unknown function
- 3ht4.pdb.
lyase 11-jun-09 3ht4
Se
Title: crystal structure of the q81a77_baccr protein from bacillus cereus. northeast structural genomics consortium target bcr213
Author: s. vorobiev, s. lew, j. seetharaman, h. wang, e. foote, c. ciccosanti, h. janjua, r. xiao, l. mao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: putative cystathionine beat-lyase, aluminium resistance protein, q81a77_baccr, nesg, bcr213, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
- 3htv.pdb.
transferase 12-jun-09 3htv
Se
Title: crystal structure of d-allose kinase (np_418508.1) from escherichia coli k12 at 1.95 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: d-allose kinase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, atp-binding, carbohydrate metabolism, kinase, nucleotide-binding, transferase
- 3huh.pdb.
viral protein 14-jun-09 3huh
Title: the structure of biphenyl-2,3-diol 1,2-dioxygenase iii- related protein from salmonella typhimurium
Author: a. a. fedorov, e. v. fedorov, r. toro, m. j. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: nysgrc, target 13955a1bct15p1, dioxygenase, virulence, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, viral protein
- 3hv1.pdb.
transport protein 15-jun-09 3hv1
Se
Title: crystal structure of a polar amino acid abc uptake transporter substrate binding protein from streptococcus thermophilus
Author: k. palani, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: abc uptake transporter, protein structure initiative ii(psi ii), nysgxrc, 11316l, structural genomics, new york sgx research center for structural genomics, transport protein
- 3hv2.pdb.
signaling protein 15-jun-09 3hv2
Title: crystal structure of signal receiver domain of hd domain- containing protein from pseudomonas fluorescens pf-5
Author: y. patskovsky, u. ramagopal, r. toro, j. freeman, s. miller, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: psi-2, nysgxrc, structural genomics, protein structure initiative, new york sgx research center for structural genomics, signal recognition, signaling protein
- 3hvu.pdb.
transferase 16-jun-09 3hvu
Na
Title: 1.95 angstrom crystal structure of complex of hypoxantine- guanine phosphoribosyltransferase from bacillus anthracis with 2-(n-morpholino)ethanesulfonic acid (mes)
Author: g. minasov, a. halavaty, l. shuvalova, i. dubrovska, j. winsor, l. papazisi, w. f. anderson, center for structural genomics of infectious diseases (csgid)
Keywords: 2-(n- morpholino)ethanesulfonic acid (mes), idp01892, glycosyltransferase, transferase, structural genomics, center for structural genomics of infectious diseases, csgid
- 3hvw.pdb.
lyase 16-jun-09 3hvw
Se
Title: crystal structure of the ggdef domain of the pa2567 protein from pseudomonas aeruginosa, northeast structural genomics consortium target par365c
Author: f. forouhar, s. lew, j. seetharaman, s. sahdev, r. xiao, c. ciccosanti, e. l. foote, h. wang, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, lyase
- 3hvz.pdb.
structural genomics, unknown function 16-jun-09 3hvz
Se
Title: crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a
Author: f. forouhar, s. lew, j. seetharaman, s. sahdev, r. xiao, c. ciccosanti, d. lee, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
- 3ixz.pdb.
hydrolase 09-mar-09 3ixz
(electron crystallography)
Title: pig gastric h+/k+-atpase complexed with aluminium fluoride
Author: k. abe, k. tani, t. nishizawa, y. fujiyoshi
Keywords: phosphoprotein, potassium, potassium transport, transmembrane, transport, disulfide bond, glycoprotein, signal-anchor
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Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS