Recent PDB releases or updates: week of 8 May 2009
- 1emg.pdb.
greenfluorescent protein 12-nov-98 1emg
Title: green fluorescent protein (65-67 replaced by cro, s65t substitution, q80r)
Author: m. a. elsliger, r. m. wachter, k. kallio, g. t. hanson, s. j. remington
Keywords: bioluminescence, photoactive protein, fluorescent tag, ph titration
- 1emk.pdb.
luminescence 31-mar-97 1emk
Title: green fluorescent protein from aequorea victoria, mutant
Author: g. palm, a. zdanov, a. wlodawer
Keywords: beta-barrel, bioluminescence, luminescence
- 1eml.pdb.
luminescence 31-mar-97 1eml
Title: green fluorescent protein from aequorea victoria, mutant
Author: g. palm, a. zdanov, a. wlodawer
Keywords: beta-barrel, bioluminescence, luminescence
- 1emm.pdb.
luminescence 31-mar-97 1emm
Title: green fluorescent protein from aequorea victoria, mutant
Author: g. palm, a. zdanov, a. wlodawer
Keywords: beta-barrel, bioluminescence, luminescence
- 1f09.pdb.
luminescent protein 15-may-00 1f09
I
Title: crystal structure of the green fluorescent protein (gfp) variant yfp-h148q with two bound iodides
Author: r. m. wachter, d. yarbrough, k. kallio, s. j. remington
Keywords: luminescence, bioluminescence, photoactive protein, green fluorescent protein, luminescent protein
- 1f0b.pdb.
luminescent protein 15-may-00 1f0b
Title: crystal structure of the green fluorescent protein (gfp) variant yfp-h148q
Author: r. m. wachter, d. yarbrough, k. kallio, s. j. remington
Keywords: luminescence, bioluminescence, photoactive protein, green fluorescent protein, luminescent protein
- 1fkn.pdb.
hydrolase/hydrolase inhibitor 09-aug-00 1fkn
Title: structure of beta-secretase complexed with inhibitor
Author: l. hong, g. koelsch, x. lin, s. wu, s. terzyan, a. ghosh, x. c. zhang, j. tang
Keywords: beta-secretase, memapsin 2, base, aspartic protease, hydrolase/hydrolase inhibitor complex
- 1g20.pdb.
oxidoreductase 16-oct-00 1g20
Mo Fe Ca
Title: mgatp-bound and nucleotide-free structures of a nitrogenase protein complex between leu127del-fe protein and the mofe protein
Author: h. -j. chiu, j. w. peters, w. n. lanzilotta, m. j. ryle, l. c. seefeldt, j. b. howard, d. c. rees
Keywords: fe protein, mofe protein, p-cluster and femo cofactor, oxidoreductase
- 1g21.pdb.
oxidoreductase 16-oct-00 1g21
Mg Mo Fe Ca
Title: mgatp-bound and nucleotide-free structures of a nitrogenase protein complex between leu127del-fe protein and the mofe protein
Author: h. -j. chiu, j. w. peters, w. n. lanzilotta, m. j. ryle, l. c. seefeldt, j. b. howard, d. c. rees
Keywords: fe protein, moefe protein, p-cluster, femo cofactor, 4fe-4s, oxidoreductase
- 1h9o.pdb.
transferase/receptor 14-mar-01 1h9o
Title: phosphatidylinositol 3-kinase, p85-alpha subunit: c-terminal sh2 domain complexed with a tyr751 phosphopeptide from the pdgf receptor, crystal structure at 1.79 a
Author: r. a. pauptit, s. rowsell, a. l. breeze, g. n. murshudov, c. a. dennis, d. j. derbyshire, s. a. weston
Keywords: complex (phosphotransferase/receptor), phosphotransferase, sh2 domain, signal transduction, phosphoinositide 3-kinase
- 1l5h.pdb.
oxidoreductase 06-mar-02 1l5h
Fe Ca
Title: femo-cofactor deficient nitrogenase mofe protein
Author: b. schmid, m. w. ribbe, o. einsle, m. yoshida, l. m. thomas, d. r. dean, d. c. rees, b. k. burgess
Keywords: oxidoreductase
- 1m1n.pdb.
oxidoreductase 19-jun-02 1m1n
Mo Fe Ca
Title: nitrogenase mofe protein from azotobacter vinelandii
Author: o. einsle, f. a. tezcan, s. l. a. andrade, b. schmid, m. yoshida, j. b. howard, d. c. rees
Keywords: femo cofactor, nitrogen fixation, central nitrogen ligand, oxidoreductase
- 1m1y.pdb.
oxidoreductase 20-jun-02 1m1y
Mo Fe Ca
Title: chemical crosslink of nitrogenase mofe protein and fe protein
Author: b. schmid, o. einsle, h. j. chiu, a. willing, m. yoshida, j. b. howard, d. c. rees
Keywords: nitrogen fixation, chemical crosslink, protein interaction, oxidoreductase
- 1m34.pdb.
oxidoreductase 27-jun-02 1m34
Mg F Mo Fe Al Ca
Title: nitrogenase complex from azotobacter vinelandii stabilized by adp-tetrafluoroaluminate
Author: b. schmid, o. einsle, h. -j. chiu, a. willing, m. yoshida, j. b. howard, d. c. howard, j. b. rees
Keywords: nitrogen fixation, signal transduction, electron transfer, atp hydrolysis, complex of nitrogenase proteins, oxidoreductase
- 1n2c.pdb.
complex of nitrogenase proteins 02-may-97 1n2c
Mg F Mo Fe Al Ca
Title: nitrogenase complex from azotobacter vinelandii stabilized by adp-tetrafluoroaluminate
Author: h. schindelin, c. kisker, d. c. rees
Keywords: nitrogen fixation, signal transduction, electron transfer, atp hydrolysis, complex of nitrogenase proteins
- 1ngx.pdb.
immune system 18-dec-02 1ngx
Title: chimeric germline fab 7g12 with jeffamine fragment bound
Author: j. yin, s. e. andryski, a. b. beuscher, r. c. stevens, p. g. schultz
Keywords: immunoglobulin, antigen binding fragment (fab), immune system
- 1oh2.pdb.
outer membrane protein 21-may-03 1oh2
Ca
Title: sucrose-specific porin, with bound sucrose molecules
Author: k. diederichs, w. welte
Keywords: porin, transport, sugar transport, transmembrane
- 1pbo.pdb.
odorant-binding 15-jul-96 1pbo
Se
Title: complex of bovine odorant binding protein (obp) with a selenium containing odorant
Author: l. m. amzel, m. a. bianchet, h. monaco, g. bains
Keywords: transport, lipocalin
- 1ptv.pdb.
complex (hydrolase/peptide) 21-apr-95 1ptv
Title: crystal structure of protein tyrosine phosphatase 1b complexed with phosphotyrosine
Author: d. barford, z. jia
Keywords: acetylation, phosphorylation, peptide, complex (hydrolase/peptide) complex
- 1q4a.pdb.
luminescent protein 02-aug-03 1q4a
Title: s65t q80r green fluorescent protein (gfp) ph 8.5
Author: r. k. jain, r. ranganathan
Keywords: gfp, fluorophore, chromophore, luminescent protein
- 1q4b.pdb.
luminescent protein 02-aug-03 1q4b
Title: s65t q80r green fluorescent protein (gfp) ph 5.5
Author: r. k. jain, r. ranganathan
Keywords: gfp, fluorophore, chromophore, luminescent protein
- 1q4c.pdb.
luminescent protein 02-aug-03 1q4c
Title: s65t q80r t203c green fluorescent protein (gfp) ph 8.5
Author: r. k. jain, r. ranganathan
Keywords: gfp, fluorophore, chromophore, luminescent protein
- 1q4d.pdb.
luminescent protein 02-aug-03 1q4d
Title: s65t q80r t203c green fluorescent protein (gfp) ph 5.5
Author: r. k. jain, r. ranganathan
Keywords: gfp, fluorophore, chromophore, luminescent protein
- 1q4e.pdb.
luminescent protein 02-aug-03 1q4e
Title: s65t q80r y145c green fluorescent protein (gfp) ph 8.5
Author: r. k. jain, r. ranganathan
Keywords: gfp, fluorophore, chromophore, luminescent protein
- 1q73.pdb.
luminescent protein 15-aug-03 1q73
Title: s65t q80r y145c t203c green fluorescent protein (gfp) ph 8.5
Author: r. k. jain, r. ranganathan
Keywords: gfp, fluorophore, chromophore, luminescent protein
- 1qgu.pdb.
oxidoreductase 06-may-99 1qgu
Cl Mg Mo Fe
Title: nitrogenase mo-fe protein from klebsiella pneumoniae, dithionite-reduced state
Author: s. m. mayer, d. m. lawson, c. a. gormal, s. m. roe, b. e. smith
Keywords: nitrogen metabolism, molybdoenzymes, electron transfer, oxidoreductase
- 1qh1.pdb.
oxidoreductase 10-may-99 1qh1
Cl Mg Mo Fe
Title: nitrogenase mofe protein from klebsiella pneumoniae, phenosafranin oxidized state
Author: s. m. mayer, d. m. lawson, c. a. gormal, s. m. roe, b. e. smith
Keywords: nitrogen metabolism, molybdoenzymes, electron transfer, oxidoreductase
- 1qh8.pdb.
oxidoreductase 11-may-99 1qh8
Cl Mg Mo Fe
Title: nitrogenase mofe protein from klebsiella pneumoniae, as- crystallized (mixed oxidation) state
Author: s. m. mayer, d. m. lawson, c. a. gormal, s. m. roe, b. e. smith
Keywords: nitrogen metabolism, molybdoenzymes, electron transfer, oxidoreductase
- 1xqm.pdb.
luminescent protein 13-oct-04 1xqm
Title: variations on the gfp chromophore scaffold: a fragmented 5- membered heterocycle revealed in the 2.1a crystal structure of a non-fluorescent chromoprotein
Author: p. g. wilmann, j. petersen, r. j. devenish, m. prescott, j. rossjohn
- 1y5v.pdb.
transferase 03-dec-04 1y5v
Zn
Title: trna-guanine transglycosylase (tgt) in complex with 6-amino- 4-(2-phenylethyl)-1,7-dihydro-8h-imidazo[4,5-g]quinazolin- 8-one
Author: b. stengl, e. a. meyer, a. heine, r. brenk, f. diederich, g. klebe
- 1y5w.pdb.
transferase 03-dec-04 1y5w
Zn
Title: trna-guanine transglycosylase (tgt) in complex with 6-amino- 4-[2-(4-methylphenyl)ethyl]-1,7-dihydro-8h-imidazo[4,5- g]quinazolin-8-one
Author: b. stengl, e. a. meyer, a. heine, r. brenk, f. diederich, g. klebe
- 1y5x.pdb.
transferase 03-dec-04 1y5x
Zn
Title: trna-guanine transglycosylase (tgt) in complex with 6-amino- 4-[2-(4-methoxyphenyl)ethyl]-1,7-dihydro-8h-imidazo[4,5- g]quinazolin-8-one
Author: b. stengl, e. a. meyer, a. heine, r. brenk, f. diederich, g. klebe
- 2afh.pdb.
oxidoreductase 25-jul-05 2afh
Mo Na Fe Ca
Title: crystal structure of nucleotide-free av2-av1 complex
Author: f. a. tezcan, j. t. kaiser, d. mustafi, m. y. walton, j. b. howard, d. c. rees
Keywords: iron-sulfur, metal-binding, molybdenum, oxidoreductase
- 2afi.pdb.
oxidoreductase 25-jul-05 2afi
Mg Mo Fe Ca
Title: crystal structure of mgadp bound av2-av1 complex
Author: f. a. tezcan, j. t. kaiser, d. mustafi, m. y. walton, j. b. howard, d. c. rees
Keywords: iron-sulfur, metal-binding, molybdenum, oxidoreductase
- 2afk.pdb.
oxidoreductase 26-jul-05 2afk
Mg Mo Fe Ca
Title: crystal structure of mgamppcp-bound av2-av1 complex
Author: f. a. tezcan, j. t. kaiser, d. mustafi, m. y. walton, j. b. howard, d. c. rees
Keywords: iron-sulfur, metal-binding, molybdenum, oxidoreductase
- 2bnm.pdb.
oxidoreductase 29-mar-05 2bnm
Zn
Title: the structure of hydroxypropylphosphonic acid epoxidase from s. wedmorenis.
Author: k. mcluskey, s. cameron, w. n. hunter
Keywords: epoxidase, cupin, hth, cation-dependant, zinc, fosfomycin
- 2bnn.pdb.
oxidoreductase 29-mar-05 2bnn
Zn
Title: the structure of hydroxypropylphosphonic acid epoxidase from s. wedmorenis in complex with fosfomycin
Author: k. mcluskey, s. cameron, w. n. hunter
Keywords: epoxidase, cupin, hth, cation-dependant, zinc, fosfomycin oxidoreductase
- 2bno.pdb.
oxidoreductase 29-mar-05 2bno
Hg Zn
Title: the structure of hydroxypropylphosphonic acid epoxidase from s. wedmorenis.
Author: k. mcluskey, s. cameron, w. n. hunter
Keywords: epoxidase, cupin, hth, cation-dependant, zinc, fosfomycin
- 2c9d.pdb.
transferase 09-dec-05 2c9d
K
Title: lumazine synthase from mycobacterium tuberculosis bound to 3-(1,3,7-trihydro-9-d-ribityl-2,6,8-purinetrione-7-yl) hexane 1-phosphate
Author: e. morgunova, b. illarionov, g. jin, i. haase, m. fischer, m. cushman, a. bacher, r. ladenstein
Keywords: riboflavin biosynthesis, mycobacterium tuberculosis, lumazine synthase, inhibitor binding
- 2ddc.pdb.
luminescent protein 27-jan-06 2ddc
Mg Na
Title: unique behavior of a histidine responsible for an engineered green-to-red photoconversion process
Author: h. shimizu, h. tsutsui, n. nukina, a. miyawaki
Keywords: red state, luminescent protein
- 2ddd.pdb.
luminescent protein 27-jan-06 2ddd
Mg Na
Title: unique behavior of a histidine responsible for an engineered green-to-red photoconversion process
Author: h. shimizu, h. tsutsui, n. nukina, a. miyawaki
Keywords: green state, luminescent protein
- 2dql.pdb.
circadian clock protein 29-may-06 2dql
Title: crytal structure of the circadian clock associated protein pex from anabaena
Author: s. kurosawa, t. kouyama
Keywords: circadian clock protein
- 2gx0.pdb.
luminescent protein 08-may-06 2gx0
Title: crystal structural and functional analysis of gfp-like fluorescent protein
Author: k. y. hwang, k. -h. nam, s. -y. park, k. sugiyama
Keywords: b-can, photoswitching, luminescent protein
- 2gx2.pdb.
luminescent protein 08-may-06 2gx2
Mg
Title: crystal structural and functional analysis of gfp-like fluorescent protein dronpa
Author: k. y. hwang, k. -h. nam, s. -y. park, k. sugiyama
Keywords: fluorescence protein, luminescent protein
- 2ib5.pdb.
luminescent protein 10-sep-06 2ib5
Se
Title: structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Author: m. c. y. chan, i. bosanac, m. ikura
Keywords: alpha helix, chromoprotein, chromophore, blue, gfp-like protein, luminescent protein
- 2ib6.pdb.
luminescent protein 10-sep-06 2ib6
Se
Title: structural characterization of a blue chromoprotein and its yellow mutant from the sea anemone cnidopus japonicus
Author: m. c. y. chan, i. bosanac, d. ho, g. prive, m. ikura
Keywords: alpha helix, chromoprotein, yellow, chromophore, gfp-like protein, luminescent protein
- 2j4z.pdb.
transferase 08-sep-06 2j4z
As
Title: structure of aurora-2 in complex with pha-680626
Author: a. d. cameron, g. izzo, p. storici, l. rusconi, d. fancelli, m. varasi, d. berta, s. bindi, b. forte, d. severino, r. tonani, p. vianello
Keywords: phosphorylation, nucleotide-binding, kinase, cell cycle, atp-binding, nucleotide- binding, serine/threonine-protein kinase, serine-threonine-protein kinase
- 2jwe.pdb.
cell adhesion 10-oct-07 2jwe
He Hg
(solution NMR)
Title: solution structure of the second pdz domain from human zonula occludens-1: a dimeric form with 3d domain swapping
Author: p. ji, j. w. wu, j. h. zhang, y. s. yang, j. h. wu, y. y. shi
Keywords: dimer, domain swapping, tjp1, alternative splicing, cell junction, membrane, phosphorylation, polymorphism, sh3 domain, tight junction, cell adhesion
- 2k0j.pdb.
metal binding protein 04-feb-08 2k0j
He Hg La Ca
(solution NMR)
Title: solution structure of cam complexed to drp1p
Author: i. bertini, c. luchinat, g. parigi, j. yuan, structural proteomics in europe (spine)
Keywords: drp1 peptide, acetylation, calcium, methylation, phosphoprotein, ubl conjugation, structural genomics, structural proteomics in europe, spine, metal binding protein
- 2k40.pdb.
dna binding protein 26-may-08 2k40
He Hg
(solution NMR)
Title: nmr structure of hesx-1 homeodomain double mutant r31l/e42l
Author: j. asensio, m. torrado, c. gonzalez, a. bastida
Keywords: dna binding protein, developmental protein, disease mutation, dna-binding, dwarfism, homeobox, nucleus, polymorphism, transcription, transcription regulation
- 2k61.pdb.
metal binding protein 02-jul-08 2k61
He Hg Tb Ca
(solution NMR)
Title: solution structure of cam complexed to dapk peptide
Author: i. bertini, c. luchinat, g. parigi, j. yuan
Keywords: dapk peptide, acetylation, calcium, methylation, phosphoprotein, ubl conjugation, metal binding protein
- 2k7h.pdb.
allergen 11-aug-08 2k7h
He Hg
(solution NMR)
Title: nmr solution structure of soybean allergen gly m 4
Author: h. berkner, p. neudecker, d. mittag, b. k. ballmer-weber, k. schweimer, s. vieths, p. roesch
Keywords: nmr, soybean, protein, allergen, pathogenesis- related protein, plant defense
- 2k89.pdb.
protein binding 04-sep-08 2k89
He Hg
(solution NMR)
Title: solution structure of a novel ubiquitin-binding domain from human plaa (pfuc, gly76-pro77 cis isomer)
Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
Keywords: wd repeat, protein binding
- 2k8a.pdb.
protein binding 04-sep-08 2k8a
He Hg
(solution NMR)
Title: solution structure of a novel ubiquitin-binding domain from human plaa (pfuc, gly76-pro77 trans isomer)
Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
Keywords: wd repeat, protein binding
- 2k8b.pdb.
protein binding 04-sep-08 2k8b
He Hg
(solution NMR)
Title: solution structure of plaa family ubiquitin binding domain (pfuc) cis isomer in complex with ubiquitin
Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
Keywords: cytoplasm, nucleus, phosphoprotein, ubl conjugation, wd repeat, protein binding
- 2k8c.pdb.
protein binding 04-sep-08 2k8c
He Hg
(solution NMR)
Title: solution structure of plaa family ubiquitin binding domain (pfuc) trans isomer in complex with ubiquitin
Author: q. s. fu, c. j. zhou, h. c. gao, d. h. lin, h. y. hu
Keywords: cytoplasm, nucleus, phosphoprotein, ubl conjugation, wd repeat, protein binding
- 2k8q.pdb.
structural protein 18-sep-08 2k8q
He Hg
(solution NMR)
Title: nmr structure of shq1p n-terminal domain
Author: k. s. godin, g. varani
Keywords: cs domain, nucleus, structural protein
- 2k9p.pdb.
membrane protein 21-oct-08 2k9p
He Hg
(solution NMR)
Title: structure of tm1_tm2 in lppg micelles
Author: n. neumoin, o. zerbe, f. naider
Keywords: gpcr, micelle, structurral biology, fragment, g- protein coupled receptor, glycoprotein, membrane, pheromone response, phosphoprotein, receptor, transducer, transmembrane, membrane protein
- 2kak.pdb.
metal binding protein 06-nov-08 2kak
Hg Zn
(solution NMR)
Title: solution structure of the beta-e-domain of wheat ec-1 metallothionein
Author: e. a. peroza, r. schmucki, p. guntert, e. freisinger, o. zerbe
Keywords: metallothionein, solution structure, wheat ec-1, zn binding, metal-binding, metal-thiolate cluster, zinc, metal binding protein
- 2kb3.pdb.
dehydrogenase inhibitor 20-nov-08 2kb3
He Hg
(solution NMR)
Title: nmr structure of the phosphorylated form of odhi, podhi.
Author: p. barthe, c. roumestand, m. canova, c. hurard, v. molle, m. cohen- gonsaud
Keywords: kinase substrate, gara, fha, cytoplasm, phosphoprotein, dehydrogenase inhibitor
- 2kb4.pdb.
dehydrogenase inhibitor 20-nov-08 2kb4
He Hg
(solution NMR)
Title: nmr structure of the unphosphorylated form of odhi, odhi.
Author: p. barthe, c. roumestand, m. canova, c. hurard, v. molle, m. cohen- gonsaud
Keywords: kinase substrate, gara, fha, cytoplasm, phosphoprotein, , dehydrogenase inhibitor
- 2kcw.pdb.
transferase 30-dec-08 2kcw
He Hg
(solution NMR)
Title: solution structure of apo-form yjab from escherichia coli
Author: j. lu, x. wang, c. jin
Keywords: acyltransferase, transferase
- 2kgg.pdb.
metal binding protein 11-mar-09 2kgg
He Hg Zn
(solution NMR)
Title: solution structure of jarid1a c-terminal phd finger
Author: j. song, z. wang, d. j. patel
Keywords: transcription, transcription regulation, zinc, zinc-finger, metal binding protein
- 2kgi.pdb.
metal binding protein 12-mar-09 2kgi
He Hg Zn
(solution NMR)
Title: solution structure of jarid1a c-terminal phd finger in complex with h3(1-9)k4me3
Author: j. song, z. wang, d. j. patel
Keywords: transcription, transcription regulation, zinc, zinc-finger, metal binding protein
- 2khp.pdb.
electron transport 10-apr-09 2khp
He Hg
(solution NMR)
Title: solution structure of glutaredoxin from brucella melitensis
Author: s. zheng, t. leeper, g. varani, seattle structural genomics center for infectious disease (ssgcid)
Keywords: thioredoxin type domain, nmr, ssgcid, electron transport, structural genomics, seattle structural genomics center for infectious disease
- 2khr.pdb.
biosynthetic protein 10-apr-09 2khr
He Hg
(solution NMR)
Title: solution structure of rv2377c, a mtbh-like protein from mycobacterium tuberculosis
Author: g. w. buchko, c. y. kim, t. c. terwilliger, seattle structural genomics center for infectious disease (ssgcid)
Keywords: mycobactin, mtbh-like, 2- hydroxyphenyloxazoline, tuberculosis, biosynthetic protein, structural genomics, seattle structural genomics center for infectious disease, ssgcid
- 2min.pdb.
nitrogen fixation 20-dec-96 2min
Mo Fe Ca
Title: nitrogenase mofe protein from azotobacter vinelandii, oxidized state
Author: j. w. peters, m. h. b. stowell, s. m. soltis, m. w. day, j. kim, d. c. rees
Keywords: nitrogen metabolism, oxidoreductase, molybdoenzymes, biological nitrogen fixation
- 2ntg.pdb.
hydrolase 07-nov-06 2ntg
Br
Title: structure of spin-labeled t4 lysozyme mutant t115r7
Author: z. guo, d. cascio, k. hideg, w. l. hubbell
Keywords: spin label, t4 lysozyme, electron paramagnetic resonance, epr, hydrolase
- 2opm.pdb.
transferase 29-jan-07 2opm
Mg F
Title: human farnesyl diphosphate synthase complexed with bisphosphonate bph-461
Author: r. cao, y. g. gao, h. robinson, a. goddard
Keywords: transferase
- 2rpw.pdb.
transport protein 08-nov-08 2rpw
He Hg
(solution NMR)
Title: structure of a peptide derived from h+-v-atpase subunit a
Author: l. s. vermeer, v. reat, m. a. hemminga, a. milon
Keywords: peptide, acetylation, coiled coil, glycoprotein, hydrogen ion transport, ion transport, membrane, phosphoprotein, transmembrane, transport, vacuole, transport protein
- 2rqa.pdb.
hydrolase 17-mar-09 2rqa
He Hg Zn
(solution NMR)
Title: solution structure of lgp2 ctd
Author: k. takahasi, h. kumeta, n. tsuduki, r. narita, t. shigemoto, r. hirai, m. yoneyama, m. horiuchi, k. ogura, t. fujita, i. fuyuhiko
Keywords: atp-binding, coiled coil, cytoplasm, helicase, hydrolase, immune response, innate immunity, nucleotide-binding, polymorphism, rna-binding
- 2rqb.pdb.
hydrolase 17-mar-09 2rqb
He Hg Zn
(solution NMR)
Title: solution structure of mda5 ctd
Author: k. takahasi, h. kumeta, n. tsuduki, r. narita, t. shigemoto, r. hirai, m. yoneyama, m. horiuchi, k. ogura, t. fujita, i. fuyuhiko
Keywords: phosphoprotein, polymorphism, rna-binding
- 2vjy.pdb.
lyase 14-dec-07 2vjy
Mg
Title: pyruvate decarboxylase from kluyveromyces lactis in complex with the substrate analogue methyl acetylphosphonate
Author: s. kutter, g. wille, m. s. weiss, s. konig
Keywords: magnesium, flavoprotein
- 2vk1.pdb.
lyase 16-dec-07 2vk1
Mg
Title: crystal structure of the saccharomyces cerevisiae pyruvate decarboxylase variant d28a in complex with its substrate
Author: s. kutter, m. weik, m. s. weiss, s. konig
Keywords: branched-chain amino acid catabolism, substrate activation, thiamine diphosphate, magnesium, acetylation, metal-binding, decarboxylase
- 2vk8.pdb.
lyase 17-dec-07 2vk8
Mg
Title: crystal structure of the saccharomyces cerevisiae pyruvate decarboxylase variant e477q in complex with its substrate
Author: s. kutter, m. weik, m. s. weiss, s. konig
Keywords: branched-chain amino acid catabolism, substrate activation, thiamine diphosphate, magnesium, acetylation, metal-binding, decarboxylase
- 2vxi.pdb.
metal transport 04-jul-08 2vxi
Zn Fe
Title: the binding of heme and zinc in escherichia coli bacterioferritin
Author: s. c. willies, m. n. isupov, e. f. garman, j. a. littlechild
Keywords: bacterioferritin, iron storage and electron transport, zinc, heme, iron, iron storage, metal-binding
- 2w1q.pdb.
hydrolase 20-oct-08 2w1q
Na Ca
Title: unique ligand binding specificity for a family 32 carbohydrate-binding module from the mu toxin produced by clostridium perfringens
Author: e. ficko-blean, a. b. boraston
Keywords: glycosidase, glycoside hydrolase, clostridium perfringens, cbm, toxin, secreted, virulence, hydrolase
- 2w1s.pdb.
hydrolase 20-oct-08 2w1s
Na Ca Se
Title: unique ligand binding specificity of a family 32 carbohydrate-binding module from the mu toxin produced by clostridium perfringens
Author: e. ficko-blean, a. b. boraston
Keywords: clostridium perfringens, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase, family 84 glycoside hydrolase
- 2w1u.pdb.
hydrolase 20-oct-08 2w1u
Ca
Title: a family 32 carbohydrate-binding module, from the mu toxin produced by clostridium perfringens, in complex with beta- d-glcnac-beta(1,3)galnac
Author: e. ficko-blean, a. b. boraston
Keywords: family 84 glycoside hydrolase, glycosidase, hexosaminidase, clostridium perfringens, cbm, toxin, secreted, virulence, hydrolase
- 2w2t.pdb.
signaling protein 04-nov-08 2w2t
Mg
Title: rac2 (g12v) in complex with gdp
Author: o. opaleye, t. d. bunney, s. m. roe, l. h. pearl
Keywords: phospholipase c, phosphoinositides, rho gtpases, rac signaling protein
- 2w2v.pdb.
signaling protein 04-nov-08 2w2v
Title: rac2 (g12v) in complex with gtpgs
Author: o. opaleye, t. d. bunney, s. m. roe, l. h. pearl
Keywords: cytoplasm, direct protein sequencing, disease mutation, gtp-binding, lipoprotein, methylation, nucleotide-binding, polymorphism, prenylation, signaling protein, phospholipase c, phosphoinositides, rh...
- 2w2w.pdb.
hydrolase 04-nov-08 2w2w
Title: plcg2 split pleckstrin homology (ph) domain
Author: o. opaleye, t. d. bunney, s. m. roe, l. h. pearl
Keywords: phospholipase c, phosphoinositides, rho gtpases, rac, sh2 domain, sh3 domain
- 2w2x.pdb.
signaling protein/hydrolase 04-nov-08 2w2x
Mg
Title: complex of rac2 and plcg2 spph domain
Author: o. opaleye, t. d. bunney, s. m. roe, l. h. pearl
Keywords: phospholipase c, phosphoinositides, rho gtpases, rac, sh2 domain, sh3 domain, signaling protein/hydrolase
- 2w3x.pdb.
hydrolase 17-nov-08 2w3x
Title: crystal structure of a bifunctional hotdog fold thioesterase in enediyne biosynthesis, cale7
Author: m. kotaka, r. kong, i. qureshi, q. s. ho, h. sun, c. w. liew, l. p. goh, p. cheung, y. mu, j. lescar, z. x. liang
Keywords: hotdog fold, thioesterase, enediyne biosynthesis
- 2w48.pdb.
transcription 21-nov-08 2w48
Cl
Title: crystal structure of the full-length sorbitol operon regulator sorc from klebsiella pneumoniae
Author: d. de sanctis, c. e. mcvey, f. j. enguita, m. a. carrondo
Keywords: activator, repressor, dna-binding, transcription, klebsiella pneumoniae, transcription regulator, transcription regulation
- 2w5n.pdb.
hydrolase 11-dec-08 2w5n
Title: native structure of the gh93 alpha-l-arabinofuranosidase of fusarium graminearum
Author: r. carapito, a. imberty, j. m. jeltsch, s. c. byrns, p. h. tam, t. l. lowary, a. varrot, v. phalip
Keywords: alpha-l-arabinofuranosidase, glycosyl hydrolase, gh93
- 2w5o.pdb.
hydrolase 11-dec-08 2w5o
Se
Title: complex structure of the gh93 alpha-l-arabinofuranosidase of fusarium graminearum with arabinobiose
Author: r. carapito, a. imberty, j. m. jeltsch, s. c. byrns, p. h. tam, t. l. lowary, a. varrot, v. phalip
Keywords: alpha-l-arabinofuranosidase, glycosyl hydrolase, gh93, arabinobiose
- 2w7z.pdb.
inhibitor 06-jan-09 2w7z
Cl
Title: structure of the pentapeptide repeat protein efsqnr, a dna gyrase inhibitor. free amines modified by cyclic pentylation with glutaraldehyde.
Author: m. w. vetting, s. s. hegde, j. s. blanchard
Keywords: gyrase inhibitor, cyclic pentylation, chemical modification, pentapeptide repeat protein, inhibitor
- 2w8j.pdb.
transferase 16-jan-09 2w8j
Title: spt with plp-ser
Author: l. g. carter, m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8t.pdb.
transferase 19-jan-09 2w8t
Title: spt with plp, n100c
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8u.pdb.
transferase 19-jan-09 2w8u
Title: spt with plp, n100y
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8v.pdb.
transferase 19-jan-09 2w8v
Title: spt with plp, n100w
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8w.pdb.
transferase 19-jan-09 2w8w
Title: n100y spt with plp-ser
Author: m. c. c. raman, k. a. johnson, d. j. campopiano, j. h. naismith
- 2w8x.pdb.
membrane protein 20-jan-09 2w8x
Title: structure of the tick ion-channel modulator ra-klp
Author: g. c. paesen, c. siebold, m. dallas, c. peers, k. harlos, p. a. nuttall, m. a. nunn, d. i. stuart, r. m. esnouf
Keywords: kunitz domains, maxik channel activation, sulphur sad, membrane protein
- 2w9j.pdb.
signaling protein 25-jan-09 2w9j
As
Title: the crystal structure of srp14 from the schizosaccharomyces pombe signal recognition particle
Author: m. a. brooks, r. b. g. ravelli, a. a. mccarthy, k. strub, s. cusack
Keywords: radiation-induced phasing, rna-binding, ribonucleoprotein, signal recognition particle, signaling protein, arsenic, cytoplasm, alu-domain, cacodylate
- 2w9k.pdb.
electron transport 25-jan-09 2w9k
Fe
Title: crithidia fasciculata cytochrome c
Author: v. fulop, k. a. sam, s. j. ferguson, m. l. ginger, j. w. a. allen
Keywords: intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome, cytochrome c, mitochondrion, iron, heme, transport, haem lyase, methylation
- 2wan.pdb.
hydrolase 10-feb-09 2wan
Title: pullulanase from bacillus acidopullulyticus
Author: j. p. turkenburg, a. m. brzozowski, a. svendsen, t. v. borchert, g. j. davies, k. s. wilson
Keywords: glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate
- 2wap.pdb.
hydrolase 11-feb-09 2wap
Cl F Na
Title: 3d-crystal structure of humanized-rat fatty acid amide hydrolase (faah) conjugated with the drug-like urea inhibitor pf-3845
Author: m. mileni, s. kamtekar, r. c. stevens
Keywords: urea inhibitor, golgi apparatus, endoplasmic reticulum, acyl- enzyme, transmembrane, phosphoprotein, faah, drug, membrane, hydrolase, inhibitor
- 2wcd.pdb.
toxin 11-mar-09 2wcd
Hg
Title: crystal structure of the assembled cytolysin a pore
Author: m. mueller, u. grauschopf, t. maier, r. glockshuber, n. ban
Keywords: pore-forming toxin, transmembrane pore, toxin, membrane, secreted, cytolysis, periplasm, hemolysis, transmembrane, disulfide bond
- 2wdb.pdb.
hydrolase 23-mar-09 2wdb
Ca
Title: a family 32 carbohydrate-binding module, from the mu toxin produced by clostridium perfringens, in complex with beta- d-glcnac-beta(1,2)mannose
Author: e. ficko-blean, a. b. boraston
Keywords: family 84 glycoside hydrolase, glycosidase, hexosaminidase, clostridium perfringens, cbm, toxin, secreted, virulence, hydrolase
- 2wgh.pdb.
oxidoreductase 19-apr-09 2wgh
Mg
Title: human ribonucleotide reductase r1 subunit (rrm1) in complex with datp and mg.
Author: m. welin, m. moche, c. h. arrowsmith, h. berglund, c. bountra, r. collins, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. karlberg, t. kragh-nielsen, a. kotzsch, t. kotenyova, t. nyman, c. persson, j. sagemark, h. schueler, p. schutz, m. i. siponen, l. svensson, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. wisniewska, p. nordlund
Keywords: allosteric enzyme, nucleotide-binding, cytoplasm, atp-binding, polymorphism, oxidoreductase
- 2zit.pdb.
biosynthetic protein/transferase 24-feb-08 2zit
Title: structure of the eef2-exoa-nad+ complex
Author: r. jorgensen, a. r. merrill
Keywords: biosynthetic protein/transferase complex
- 2zmu.pdb.
luminescent protein 21-apr-08 2zmu
Title: crystal structure of monomeric kusabira-orange (mko), orange-emitting gfp-like protein, at ph 9.1
Author: a. kikuchi, e. fukumura, s. karasawa, h. mizuno, a. miyawaki, y. shiro, riken structural genomics/proteomics initiative (rsgi)
Keywords: luminescent protein, structural genomics, riken structural genomics/proteomics initiative, rsgi, nppsfa, national project on protein structural and functional analyses
- 2zmw.pdb.
luminescent protein 21-apr-08 2zmw
Title: crystal structure of monomeric kusabira-orange (mko), orange-emitting gfp-like protein, at ph 6.0
Author: a. kikuchi, e. fukumura, s. karasawa, h. mizuno, a. miyawaki, y. shiro, riken structural genomics/proteomics initiative (rsgi)
Keywords: luminescent protein, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2zmy.pdb.
oxidoreductase/metal transport 21-apr-08 2zmy
Cu
Title: crystal structure of the met2-form of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking in cupric sulfate solution for 80 hours
Author: y. matoba, m. sugiyama
Keywords: binary complex, type-3 copper, dioxygen, copper transfer, oxidoreductase/metal transport complex, copper, metal-binding
- 2zmz.pdb.
oxidoreductase/metal transport 21-apr-08 2zmz
Cu
Title: the 1.37-a crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus
Author: y. matoba, m. sugiyama
Keywords: binary complex, type-3 copper, dioxygen, copper transfer, oxidoreductase/metal transport complex, copper, metal-binding
- 2znn.pdb.
transcription 30-apr-08 2znn
Title: human pprr alpha ligand binding domain in complex with a synthetic agonist tipp703
Author: t. oyama, k. toyota, j. kasuga, h. miyachi, k. morikawa
Keywords: protein-ligand complex, ppar, activator, dna-binding, metal-binding, nucleus, polymorphism, receptor, transcription, transcription regulation, zinc, zinc-finger
- 2zno.pdb.
transcription 30-apr-08 2zno
Title: human pprr gamma ligand binding domain in complex with a synthetic agonist tipp703
Author: t. oyama, t. waku, j. kasuga, h. miyachi, k. morikawa
Keywords: transcription regulation, zinc, zinc-finger
- 2znp.pdb.
transcription 30-apr-08 2znp
F
Title: human pprr delta ligand binding domain in complex with a synthetic agonist tipp204
Author: t. oyama, y. hirakawa, n. nagasawa, h. miyachi, k. morikawa
Keywords: protein-ligand complex, ppar, activator, alternative splicing, dna-binding, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc, zinc-finger
- 2znq.pdb.
transcription 30-apr-08 2znq
F
Title: human pprr delta ligand binding domain in complex with a synthetic agonist tipp401
Author: t. oyama, y. hirakawa, n. nagasawa, h. miyachi, k. morikawa
Keywords: protein-ligand complex, ppar, activator, alternative splicing, dna-binding, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc, zinc-finger
- 2zns.pdb.
membrane protein 01-may-08 2zns
Title: crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, glur5, in complex with glutamate
Author: m. unno, m. sasaki, m. ikeda-saito
Keywords: synapse, transmembrane, transport, membrane protein
- 2znt.pdb.
membrane protein 01-may-08 2znt
Title: crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, glur5, in complex with a novel selective agonist, dysiherbaine
Author: m. unno, m. sasaki, m. ikeda-saito
Keywords: postsynaptic cell membrane, rna editing, synapse, transmembrane, transport, membrane protein
- 2znu.pdb.
membrane protein 01-may-08 2znu
Title: crystal structure of the ligand-binding core of the human ionotropic glutamate receptor, glur5, in complex with a novel selective agonist, neodysiherbaine a
Author: m. unno, m. sasaki, m. ikeda-saito
Keywords: rna editing, synapse, transmembrane, transport, membrane protein
- 2zo5.pdb.
oxidoreductase 05-may-08 2zo5
He Hg Na Fe Ca
Title: structure of the complex a hexameric multiheme c nitrite reductase from the extremophile bacterium thiolkalivibrio nitratireducens with azide ion
Author: k. m. polyakov, k. m. boyko, a. slutsky, t. v. tikhonova, a. n. antipov, r. a. zvyagilskaya, a. n. popov, v. s. lamzin, g. p. bourenkov, v. o. popov
Keywords: nrfa, sulfite reductase, oxidoreductase
- 2ztc.pdb.
dna binding protein, recombination 01-oct-08 2ztc
Title: mtruva form ii
Author: j. r. prabu, s. thamotharan, j. s. khanduja, n. r. chandra, k. muniyappa, m. vijayan
Keywords: nucleotide-binding, sos response
- 2ztd.pdb.
dna binding protein, recombination 01-oct-08 2ztd
Title: mtruva form iii
Author: j. r. prabu, s. thamotharan, j. s. khanduja, n. r. chandra, k. muniyappa, m. vijayan
Keywords: nucleotide-binding, sos response
- 2zte.pdb.
dna binding protein, recombination 01-oct-08 2zte
Title: mtruva form iv
Author: j. r. prabu, s. thamotharan, j. s. khanduja, n. r. chandra, k. muniyappa, m. vijayan
Keywords: nucleotide-binding, sos response
- 2zts.pdb.
atp-binding protein 08-oct-08 2zts
Mg Se
Title: crystal structure of kaic-like protein ph0186 from hyperthermophilic archaea pyrococcus horikoshii ot3
Author: h. ming, k. miyazono, m. tanokura
Keywords: atp-binding, nucleotide-binding, atp- binding protein
- 2zv3.pdb.
hydrolase 31-oct-08 2zv3
Title: crystal structure of project mj0051 from methanocaldococcus jannaschii dsm 2661
Author: k. shimizu, riken structural genomics/proteomics initiative (rsgi)
Keywords: hydrolase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2zvb.pdb.
transferase 04-nov-08 2zvb
Title: crystal structure of tt0207 from thermus thermophilus hb8
Author: k. shimizu, riken structural genomics/proteomics initiative (rsgi)
Keywords: plasmid, transferase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2zvc.pdb.
transferase 04-nov-08 2zvc
Title: form 2 structure (c2221) of tt0207 from thermus thermophilus hb8
Author: k. shimizu, riken structural genomics/proteomics initiative (rsgi)
Keywords: methyltransferase, plasmid, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2zxk.pdb.
oxidoreductase 29-dec-08 2zxk
Na Se
Title: crystal structure of semet-red chlorophyll catabolite reductase
Author: m. sugishima, y. kitamori, k. fukuyama
Keywords: chlorophyll catabolism, chloroplast, coiled coil, nadp, oxidoreductase, plastid, transit peptide
- 2zxl.pdb.
oxidoreductase 29-dec-08 2zxl
Na
Title: crystal structure of red chlorophyll catabolite reductase from arabidopsis thaliana
Author: m. sugishima, y. kitamori, k. fukuyama
Keywords: chlorophyll catabolism, chloroplast, coiled coil, nadp, oxidoreductase, plastid, transit peptide
- 2zyt.pdb.
transferase 29-jan-09 2zyt
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with paps
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, paps, sulfonation, transferase
- 2zyu.pdb.
transferase 29-jan-09 2zyu
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with paps and p-nitrophenyl sulfate
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, paps, nitrophenylsulfate, reverse reaction
- 2zyv.pdb.
transferase 29-jan-09 2zyv
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with paps/pap and p-nitrophenol
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, paps, p-nitrophenol, michaelis complex, sulfonation mechanism
- 2zyw.pdb.
transferase 29-jan-09 2zyw
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with pap and p-nitrophenol, obtained by two-step soaking method
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, pap, p-nitrophenol, sulfonation
- 2zzj.pdb.
lyase 16-feb-09 2zzj
Ca
Title: crystal structure of endo-beta-1,4-glucuronan lyase from fungus trichoderma reesei
Author: n. konno, t. ishida, s. fushinobu, k. igarashi, n. habu, m. samejima, a. isogai
Keywords: lyase
- 3b78.pdb.
biosynthetic protein/transferase 30-oct-07 3b78
Title: structure of the eef2-exoa(r551h)-nad+ complex
Author: r. jorgensen, a. r. merrill
Keywords: biosynthetic protein/transferase complex
- 3b82.pdb.
biosynthetic protein/transferase 31-oct-07 3b82
Title: structure of the eef2-exoa(e546h)-nad+ complex
Author: r. jorgensen, a. r. merrill
Keywords: biosynthetic protein/transferase complex
- 3b8h.pdb.
biosynthetic protein/transferase 01-nov-07 3b8h
Title: structure of the eef2-exoa(e546a)-nad+ complex
Author: r. jorgensen, a. r. merrill
Keywords: biosynthetic protein/transferase complex
- 3c7w.pdb.
hydrolase 08-feb-08 3c7w
Cl
Title: contributions of all 20 amino acids at site 96 to the stability and structure of t4 lysozyme
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3c7y.pdb.
hydrolase 08-feb-08 3c7y
Cl
Title: mutant r96a of t4 lysozyme in wildtype background at 298k
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, hydrolase
- 3c7z.pdb.
hydrolase 08-feb-08 3c7z
Cl
Title: t4 lysozyme mutant d89a/r96h at room temperature
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3c80.pdb.
hydrolase 08-feb-08 3c80
Cl
Title: t4 lysozyme mutant r96y at room temperature
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3c81.pdb.
hydrolase 08-feb-08 3c81
Cl
Title: mutant k85a of t4 lysozyme in wildtype background at room temperature
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3c82.pdb.
hydrolase 08-feb-08 3c82
Cl
Title: bacteriophage lysozyme t4 lysozyme mutant k85a/r96h
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3c83.pdb.
hydrolase 08-feb-08 3c83
Cl
Title: bacteriophage t4 lysozyme mutant d89a in wildtype background at room temperature
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3c8q.pdb.
hydrolase 13-feb-08 3c8q
Cl K
Title: contribution of all 20 amino acids at site 96 to the stability and structure of t4 lysozyme
Author: b. h. m. mooers
Keywords: bacteriolytic enzyme, glycosidase
- 3c8r.pdb.
hydrolase 13-feb-08 3c8r
Cl
Title: contributions of all 20 amino acids at site 96 to stability and structure of t4 lysozyme
Author: b. h. m. mooers
Keywords: antimicrobial, bacteriolytic enzyme, glycosidase
- 3c8s.pdb.
hydrolase 13-feb-08 3c8s
Cl K
Title: contributions of all 20 amino acids at site 96 to the stability and structure of t4 lysozyme
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature-sensitive mutant, hydrolase, antimicrobial, bacteriolytic enzyme, glycosidase
- 3cdo.pdb.
hydrolase 27-feb-08 3cdo
Title: bacteriophage t4 lysozyme mutant r96v in wildtype background at low temperature
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature-sensitive mutant, phosphate binding site, mpd binding site, chloride binding site, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3cdq.pdb.
hydrolase 27-feb-08 3cdq
Cl K
Title: contributions of all 20 amino acids at site 96 to the stability and structure of t4 lysozyme
Author: b. h. m. mooers, b. w. matthews
Keywords: protein crevices, steric strain, temperature-sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3cdr.pdb.
hydrolase 27-feb-08 3cdr
Cl
Title: r96q mutant of wildtype phage t4 lysozyme at 298 k
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature-sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3cdt.pdb.
hydrolase 27-feb-08 3cdt
Cl
Title: contributions of all 20 amino acids at site 96 to the stability and structure of t4 lysozyme
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3cdv.pdb.
hydrolase 27-feb-08 3cdv
Cl
Title: contributions of all 20 amino acids at site 96 to the stability and structure of t4 lysozyme
Author: b. h. m. mooers
Keywords: protein crevices, steric strain, temperature- sensitive mutant, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3ct4.pdb.
transferase 11-apr-08 3ct4
Title: structure of dha-kinase subunit dhak from l. lactis
Author: j. m. jeckelmann, a. zurbriggen, s. christen, u. baumann, b. erni
Keywords: dihydroxyacetone kinase subunit, tranferase, covalently linked 2ha, glycerol metabolism, transferase
- 3cu8.pdb.
protein binding, signaling protein 16-apr-08 3cu8
Mg
Title: impaired binding of 14-3-3 to raf1 is linked to noonan and leopard syndrome
Author: b. schumacher, m. weyand, j. kuhlmann, c. ottmann
Keywords: zeta, adapter protein, craf1, noonan syndrome, leopard syndrome, acetylation, cytoplasm, phosphoprotein, protein binding, signaling protein
- 3cw0.pdb.
chaperone 21-apr-08 3cw0
Title: e.coli dmsd
Author: s. ramasamy, w. clemons
Keywords: alpha-helices, chaperone, cytoplasm, membrane
- 3cxi.pdb.
toxin 24-apr-08 3cxi
Title: structure of bthtx-i complexed with alpha-tocopherol
Author: j. i. dos santos, m. r. m. fontes
Keywords: bothrops jaracussu, lys49-pla2, snake venom, phospholipase a2, x-ray crystallography, secreted
- 3cyl.pdb.
toxin 25-apr-08 3cyl
Title: crystal structure of piratoxin i (a myotoxic lys49-pla2) complexed with alpha-tocopherol
Author: j. i. dos santos, m. r. m. fontes
Keywords: bothrops pirajai, sanke venom, x-ray crystallography, alpha-tocopherol, prtx-i, myotoxin, secreted, toxin
- 3cz3.pdb.
viral protein/rna 27-apr-08 3cz3
Title: crystal structure of tomato aspermy virus 2b in complex with sirna
Author: j. b. ma, f. li, s. w. ding, d. j. patel
Keywords: coiled coil, nucleus, suppressor of rna silencing, viral protein/rna complex
- 3d18.pdb.
immune system 05-may-08 3d18
Title: crystal structure of hla-b*2709 complexed with a variant of the latent membrane protein 2 peptide (lmp2(l)) of epstein- barr virus
Author: a. beltrami, a. gabdulkhakov, m. rossmann, a. ziegler, b. uchanska- ziegler, w. saenger
Keywords: secreted, alternative splicing, cytoplasm, phosphoprotein
- 3d6l.pdb.
hydrolase 19-may-08 3d6l
Cl
Title: crystal structure of cj0915, a hexameric hotdog fold thioesterase of campylobacter jejuni
Author: t. yokoyama, h. j. yeo
Keywords: thioesterase, acyl-coa, campylobacter jejuni, hydrolase
- 3d6x.pdb.
lyase 20-may-08 3d6x
Se
Title: crystal structure of campylobacter jejuni fabz
Author: t. yokoyama, h. j. yeo
Keywords: hot dog fold, dehydratase, campylobacter jejuni, cytoplasm, lipid a biosynthesis, lipid synthesis, lyase
- 3d7o.pdb.
oxygen transport 21-may-08 3d7o
Fe
Title: human hemoglobin, nitrogen dioxide anion modified
Author: j. yi, m. k. safo, g. b. richter-addo
Keywords: acetylation, disease mutation, glycation, glycoprotein, heme, iron, metal-binding, oxygen transport, polymorphism, transport, hypotensive agent, pyruvate, s- nitrosylation, vasoactive
- 3dj5.pdb.
transferase 22-jun-08 3dj5
Br
Title: crystal structure of the mouse aurora-a catalytic domain (asn186->gly, lys240->arg, met302->leu) in complex with compound 290.
Author: r. a. elling, d. a erlanson, w. yang, b. t. tangonan, s. k. hansen, m. j. romanowski
Keywords: small-molecule inhibitor, fragment-based drug discovery, kinase, transferase
- 3dj6.pdb.
transferase 22-jun-08 3dj6
Title: crystal structure of the mouse aurora-a catalytic domain (asn186->gly, lys240->arg, met302->leu) in complex with compound 823.
Author: r. a. elling, d. a. erlanson, w. yang, b. t. tangonan, s. k. hansen, m. j. romanowski
Keywords: small-molecule inhibitor, fragment-based drug discovery, kinase, transferase
- 3dj7.pdb.
transferase 22-jun-08 3dj7
F Br
Title: crystal structure of the mouse aurora-a catalytic domain (asn186->gly, lys240->arg, met302->leu) in complex with compound 130.
Author: r. a. elling, w. yang, d. a. erlanson, b. t. tangonan, s. k. hansen, m. j. romanowski
Keywords: small-molecule inhibitor, fragment-based drug discovery, kinase, transferase
- 3don.pdb.
oxidoreductase 05-jul-08 3don
Title: crystal structure of shikimate dehydrogenase from staphylococcus epidermidis
Author: c. han, t. hu, d. wu, j. zhou, x. shen, d. qu, h. jiang
Keywords: rossman fold, amino-acid biosynthesis, aromatic amino acid biosynthesis, nadp, oxidoreductase
- 3doo.pdb.
oxidoreductase 05-jul-08 3doo
Title: crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate
Author: c. han, t. hu, d. wu, j. zhou, x. shen, d. qu, h. jiang
Keywords: rossman fold, amino-acid biosynthesis, aromatic amino acid biosynthesis, nadp, oxidoreductase
- 3doy.pdb.
lyase 07-jul-08 3doy
Cl Br
Title: crystal structure of (3r)-hydroxyacyl-acyl carrier protein dehydratase (fabz) from helicobacter pylori in complex with compound 3i
Author: l. zhang, l. he, x. liu, h. liu, x. shen, h. jiang
Keywords: lyase
- 3doz.pdb.
lyase 07-jul-08 3doz
Cl Br
Title: crystal structure of (3r)-hydroxyacyl-acyl carrier protein dehydratase (fabz) from helicobacter pylori in complex with compound 3k
Author: l. zhang, l. he, x. liu, h. liu, x. shen, h. jiang
Keywords: lyase
- 3dp0.pdb.
lyase 07-jul-08 3dp0
Cl Br
Title: crystal structure of (3r)-hydroxyacyl-acyl carrier protein dehydratase (fabz) from helicobacter pylori in complex with compound 3m
Author: l. zhang, l. he, x. liu, h. liu, x. shen, h. jiang
Keywords: lyase
- 3dp1.pdb.
lyase 07-jul-08 3dp1
Cl Br
Title: crystal structure of (3r)-hydroxyacyl-acyl carrier protein dehydratase (fabz) from helicobacter pylori in complex with compound 3n
Author: l. zhang, l. he, x. liu, h. liu, x. shen, h. jiang
Keywords: lyase
- 3dp2.pdb.
lyase 07-jul-08 3dp2
Cl Br
Title: crystal structure of (3r)-hydroxyacyl-acyl carrier protein dehydratase (fabz) from helicobacter pylori in complex with compound 3j
Author: l. zhang, l. he, x. liu, h. liu, x. shen, h. jiang
Keywords: lyase
- 3dp3.pdb.
lyase 07-jul-08 3dp3
Cl Br
Title: crystal structure of (3r)-hydroxyacyl-acyl carrier protein dehydratase (fabz) from helicobacter pylori in complex with compound 3q
Author: l. zhang, l. he, x. liu, h. liu, x. shen, h. jiang
Keywords: lyase
- 3drx.pdb.
unknown function 11-jul-08 3drx
Title: x-ray crystal structure of human kctd5 protein crystallized in high-salt buffer
Author: v. tereshko, i. dementieva, s. a. n. goldstein
Keywords: btb/poz, golgi, grasp55, potassium channel domain t1, pentameric assembly, cytoplasm, host-virus interaction, nucleus, unknown function
- 3dry.pdb.
unknown function 11-jul-08 3dry
Title: x-ray crystal structure of human kctd5 protein crystallized in low-salt buffer
Author: v. tereshko, i. dementieva, s. a. n. goldstein
Keywords: btb/poz, golgi, grasp55, potassium channel domain t1, pentameric assembly, cytoplasm, host-virus interaction, nucleus, unknown function
- 3drz.pdb.
unknown function 11-jul-08 3drz
Title: x-ray crystal structure of the n-terminal btb domain of human kctd5 protein
Author: v. tereshko, i. dementieva, s. a. n. goldstein
Keywords: btb/poz, potassium channel domain t1, pentamer, unknown function
- 3dtx.pdb.
immune system 16-jul-08 3dtx
Title: crystal structure of hla-b*2705 complexed with the double citrullinated vasoactive intestinal peptide type 1 receptor (vipr) peptide (residues 400-408)
Author: a. beltrami, a. gabdulkhakov, m. rossmann, a. ziegler, b. uchanska- ziegler, w. saenger
Keywords: glycation, secreted, mhc i, ubl conjugation, pyrrolidone carboxylic acid
- 3dyf.pdb.
transferase 27-jul-08 3dyf
Mg F
Title: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate bph-461 and isopentyl diphosphate
Author: r. cao, y. gao, h. robinson, a. goddard, e. oldfield
Keywords: isoprene biosynthesis, transferase
- 3dyg.pdb.
transferase 27-jul-08 3dyg
Mg F
Title: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate bph-461
Author: r. cao, y. gao, h. robinson, a. goddard, e. oldfield
Keywords: isoprene biosynthesis, transferase
- 3dyh.pdb.
transferase 27-jul-08 3dyh
Mg
Title: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate bph-721
Author: r. cao, y. gao, h. robinson, a. goddard, e. oldfield
Keywords: isoprene biosynthesis, transferase
- 3e1j.pdb.
metal binding protein 04-aug-08 3e1j
Fe
Title: crystal structure of e. coli bacterioferritin (bfr) with an unoccupied ferroxidase centre (apo-bfr).
Author: a. crow, t. lawson, a. lewin, g. r. moore, n. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e1l.pdb.
metal binding protein 04-aug-08 3e1l
Fe
Title: crystal structure of e. coli bacterioferritin (bfr) soaked in phosphate with an alternative conformation of the unoccupied ferroxidase centre (apo-bfr ii).
Author: a. crow, t. lawson, a. lewin, g. r. moore, n. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e1m.pdb.
metal binding protein 04-aug-08 3e1m
Fe
Title: crystal structure of e. coli bacterioferritin (bfr) obtained after soaking apo-bfr crystals for 2.5 minutes in fe2+ (2.5m fe(ii)-bfr)
Author: a. crow, t. lawson, a. lewin, g. r. moore, n. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e1n.pdb.
metal binding protein 04-aug-08 3e1n
Fe
Title: crystal structure of e. coli bacterioferritin (bfr) after a 65 minute (aerobic) exposure to fe(ii) revealing a possible mu-oxo bridge/mu-hydroxy bridged diiron intermediate at the ferroxidase centre. (fe(iii)-o-fe(iii)- bfr).
Author: a. crow, t. lawson, a. lewin, g. r. moore, n. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e1o.pdb.
metal binding protein 04-aug-08 3e1o
Zn Fe
Title: crystal structure of e. coli bacterioferritin (bfr) with two zn(ii) ion sites at the ferroxidase centre (zn-bfr).
Author: a. crow, t. lawson, a. lewin, g. r. moore, n. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e1p.pdb.
metal binding protein 04-aug-08 3e1p
Zn Fe
Title: crystal structure of e. coli bacterioferritin (bfr) in which the ferroxidase centre is inhibited with zn(ii) and high occupancy iron is bound within the cavity.
Author: a. crow, t. lawson, a. lewin, g. r. moore, n. le brun
Keywords: heme, iron, iron storage, metal-binding, metal binding protein
- 3e1x.pdb.
hydrolase 04-aug-08 3e1x
Title: the crystal structure of apo prostasin at 1.7 angstroms resolution
Author: g. spraggon, m. hornsby, a. shipway, j. l. harris, s. a. lesley
Keywords: enac, hcap-1, channel activating protease, cell membrane, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, transmembrane, zymogen
- 3e9u.pdb.
membrane protein 23-aug-08 3e9u
Title: crystal structure of calx cbd2 domain
Author: m. wu, l. zheng
Keywords: calx, membrane, transmembrane, membrane protein
- 3efq.pdb.
transferase 09-sep-08 3efq
Mg
Title: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate bph-714
Author: r. cao, y. gao, h. robinson, e. oldfield
Keywords: isoprene biosynthesis, transferase
- 3egt.pdb.
transferase 11-sep-08 3egt
Mg
Title: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate bph-722
Author: r. cao, y. gao, h. robinson, e. oldfield
Keywords: isoprene biosynthesis, transferase
- 3eie.pdb.
protein transport 15-sep-08 3eie
Title: crystal structure of s.cerevisiae vps4 in the so4-bound state
Author: m. d. gonciarz, f. g. whitby, d. m. eckert, c. kieffer, a. heroux, w. i. sundquist, c. p. hill
Keywords: atp-binding, endosome, membrane, nucleotide-binding, phosphoprotein, protein transport, transport
- 3eih.pdb.
protein transport 15-sep-08 3eih
Mg
Title: crystal structure of s.cerevisiae vps4 in the presence of atpgammas
Author: m. d. gonciarz, f. g. whitby, d. m. eckert, c. kieffer, a. heroux, w. i. sundquist, c. p. hill
Keywords: atp-binding, endosome, membrane, nucleotide-binding, phosphoprotein, protein transport, transport,
- 3en4.pdb.
transferase 25-sep-08 3en4
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp121, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3en5.pdb.
transferase 25-sep-08 3en5
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp494, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3en6.pdb.
transferase 25-sep-08 3en6
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp102, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3en7.pdb.
transferase 25-sep-08 3en7
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with s1, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3eon.pdb.
oxidoreductase 28-sep-08 3eon
F
Title: 2.55a crystal structure of native glutaryl-coa dehydrogenase from burkholderia pseudomallei in complex with a small molecule
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: pseudomallei, glutaryl-coa, dehydrogenase, seattle structural genomics center for infectious disease, ssgcid, oxidoreductase
- 3erp.pdb.
oxidoreductase 02-oct-08 3erp
Cl Zn Na As
Title: structure of idp01002, a putative oxidoreductase from and essential gene of salmonella typhimurium
Author: a. u. singer, g. minasov, e. evdokimova, j. s. brunzelle, m. kudritsdka, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
Keywords: predicted oxidoreductase, essential gene, salmonella, molecular replacement, structural genomics, center for structural genomics of infectious diseases, csgid
- 3err.pdb.
ligase 03-oct-08 3err
Title: microtubule binding domain from mouse cytoplasmic dynein as a fusion with seryl-trna synthetase
Author: a. p. carter
Keywords: microtubule binding domain, coiled coil, fusion protein, ligase
- 3etl.pdb.
dna binding protein, recombination 08-oct-08 3etl
Mg
Title: rada recombinase from methanococcus maripaludis in complex with amppnp
Author: y. li, y. he, y. luo
Keywords: strand exchange protein, atpase, recombinase, atp analogue, atp-binding, dna damage, dna recombination, dna- binding, nucleotide-binding, dna binding protein, recombination
- 3ew9.pdb.
dna binding protein, recombination 14-oct-08 3ew9
Mg K
Title: rada recombinase from methanococcus maripaludis in complex with amppnp and potassium ions
Author: y. li, y. he, y. luo
Keywords: strand exchange protein, atpase, recombinase, atp analogue, atp-binding, dna damage, dna recombination, dna- binding, nucleotide-binding, dna binding protein, recombination
- 3ewa.pdb.
dna binding protein, recombination 14-oct-08 3ewa
Mg
Title: rada recombinase from methanococcus maripaludis in complex with amppnp and ammonium ions
Author: y. li, y. he, y. luo
Keywords: strand exchange protein, atpase, recombinase, atp analogue, atp-binding, dna damage, dna recombination, dna- binding, nucleotide-binding, dna binding protein, recombination
- 3exy.pdb.
electron transport 17-oct-08 3exy
Fe
Title: crystal structure of the 2[4fe-4s] ferredoxin v13g variant from allochromatium vinosum
Author: p. giastas, e. saridakis, i. m. mavridis
Keywords: ferredoxin, [4fe-4s] clusters, 4fe-4s, iron, iron-sulfur, metal-binding, transport
- 3ey1.pdb.
hydrolase/dna 17-oct-08 3ey1
Title: a conformational transition in the structure of a 2'- thiomethyl-modified dna visualized at high resolution
Author: m. egli, p. s. pallan
Keywords: protein-dna complex, x-ray crystallography, endonuclease, 2'-thiomethyl uridine ribonucleic acid, cytoplasm, hydrolase, magnesium, manganese, metal-binding, nuclease, hydrolase/dna complex
- 3ey2.pdb.
dna 17-oct-08 3ey2
Title: a conformational transition in the structure of a 2'- thiomethyl-modified dna visualized at high resolution
Author: m. egli, p. s. pallan
Keywords: modified sugar, nucleic acid structure.
- 3ey3.pdb.
dna 17-oct-08 3ey3
Sr
Title: a conformational transition in the structure of a 2'- thiomethyl-modified dna visualized at high resolution
Author: m. egli, p. s. pallan
Keywords: crystal structure, 2'-thiomethyl uridine, modified sugar
- 3eyg.pdb.
transferase 20-oct-08 3eyg
Title: crystal structures of jak1 and jak2 inhibitor complexes
Author: n. k. williams, r. s. bamert, o. patell, c. wang, p. m. walden, e. fantino
Keywords: atp-binding, kinase, nucleotide-binding, phosphoprotein, sh2 domain, transferase, tyrosine-protein kinase
- 3eyh.pdb.
transferase 20-oct-08 3eyh
F
Title: crystal structures of jak1 and jak2 inhibitor complexes
Author: n. k. williams, r. s. bamert, o. patell, c. wang, p. m. walden, e. fantino
Keywords: atp-binding, kinase, nucleotide-binding, phosphoprotein, sh2 domain, transferase, tyrosine-protein kinase
- 3f3x.pdb.
transcription 31-oct-08 3f3x
Title: crystal structure of the transcriptional regulator bldr from sulfolobus solfataricus
Author: a. di fiore, g. de simone
Keywords: transcriptional regulator, dna-binding, transcription, transcription regulation
- 3f6m.pdb.
lyase 06-nov-08 3f6m
Se
Title: crystal structure of 2-c-methyl-d-erythritol 2,4- cyclodiphosphate synthase ispf from yersinia pestis
Author: y. kim, n. maltseva, j. stam, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: structural genomics of infectious diseases, isoprene biosynthesis, lyase, metal-binding, center for structural genomics of infectious diseases, csgid
- 3f8v.pdb.
hydrolase 13-nov-08 3f8v
Cl K Na
Title: evaulaution at atomic resolution of the role of strain in destabilizing the temperature sensitive t4 lysozyme mutant arg96-->his
Author: b. h. m mooers, b. w. matthews
Keywords: bacteriolytic enzyme, glycosidase, hydrolase, t4 lysozyme, bond angle strain, rotamer strain, temperature sensitive mutant
- 3f9l.pdb.
hydrolase 14-nov-08 3f9l
Cl K Na
Title: evaulaution at atomic resolution of the role of strain in destabilizing the temperature sensitive t4 lysozyme mutant arg96-->his
Author: b. h. m mooers, b. w. matthews
Keywords: bacteriolytic enzyme, glycosidase, hydrolase, t4 lysozyme, bond angle strain, rotamer strain, temperature sensitive mutant
- 3fa0.pdb.
hydrolase 14-nov-08 3fa0
Cl K
Title: evaulaution at atomic resolution of the role of strain in destabilizing the temperature sensitive t4 lysozyme mutant arg96-->his
Author: b. h. m mooers, b. w. matthews
Keywords: bacteriolytic enzyme, glycosidase, hydrolase, t4 lysozyme, bond angle strain, rotamer strain, temperature sensitive mutant
- 3fad.pdb.
hydrolase 17-nov-08 3fad
Title: evaulaution at atomic resolution of the role of strain in destabilizing the temperature sensitive t4 lysozyme mutant arg96-->his
Author: b. h. m mooers, b. w. matthews
Keywords: bacteriolytic enzyme, glycosidase, hydrolase, t4 lysozyme, bond angle strain, rotamer strain, temperature sensitive mutant
- 3fhq.pdb.
hydrolase 10-dec-08 3fhq
Title: structure of endo-beta-n-acetylglucosaminidase a
Author: y. jie, l. li, n. shaw, y. li, j. song, w. zhang, c. xia, r. zhang, a. joachimiak, h. -c. zhang, l. -x. wang, p. wang, z. -j. liu
Keywords: x-ray structure, glycoprotein, man3glcnac- thiazoline, glcnac-asn, glycosidase, hydrolase
- 3fi5.pdb.
hydrolase 11-dec-08 3fi5
Cl Na
Title: crystal structure of t4 lysozyme mutant r96w
Author: b. h. m mooers, b. w. matthews
Keywords: bacteriolytic enzyme, glycosidase, hydrolase, t4 lysozyme, electrostatics, strain, protein stability
- 3fmw.pdb.
oxidoreductase 22-dec-08 3fmw
Title: the crystal structure of mtmoiv, a baeyer-villiger monooxygenase from the mithramycin biosynthetic pathway in streptomyces argillaceus.
Author: n. noinaj, m. p. beam, c. wang, j. rohr
Keywords: mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase
- 3fot.pdb.
transferase 01-jan-09 3fot
Title: structural and functional characterization of tri3 trichothecene 15-o-acetyltransferase from fusarium sporotrichioides
Author: g. s. garvey, i. rayment, s. p. mccormick, n. j. alexander
Keywords: trichothecene mycotoxin, deoxynivalenol, t-2 toxin, fusarium graminearum, fusarium sporotrichioides, acetyltransferase, coenzyme a, bahd superfamily, transferase
- 3fpk.pdb.
flavoprotein, oxidoreductase 05-jan-09 3fpk
Mg Ca
Title: crystal structure of ferredoxin-nadp reductase from salmonella typhimurium
Author: y. kim, m. gu, j. stam, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: alpha-beta-roll, fad binding fold, structural genomics, center for structural genomics of infectious diseases, flavoprotein, oxidoreductase
- 3fs8.pdb.
transferase 09-jan-09 3fs8
Title: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d- glucose n-acetyl transferase from thermoanaerobacterium thermosaccharolyticum in complex with acetyl-coa
Author: h. m. holden, j. b. thoden
Keywords: natural product, deoxysugar
- 3fsb.pdb.
transferase 09-jan-09 3fsb
Title: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d- glucose n-acetyl transferase from thermoanaerobacterium thermosaccharolyticum in complex with coa and dtdp-3-amino- quinovose
Author: h. m. holden, j. b. thoden
Keywords: deoxysugar, natural product
- 3fsc.pdb.
transferase 09-jan-09 3fsc
Title: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d- glucose n-acetyl transferase from thermoanaerobacterium thermosaccharolyticum in complex with coa and dtdp-3-amino- fucose
Author: h. m. holden, j. b. thoden
Keywords: deoxysugar, natural product
- 3ft5.pdb.
chaperone 12-jan-09 3ft5
Title: structure of hsp90 bound with a novel fragment
Author: j. b. barker, o. mather, r. k. y. cheng, s. palan, b. felicetti
Keywords: alternative splicing, atp-binding, chaperone, cytoplasm, nucleotide- binding, phosphoprotein, stress response
- 3fup.pdb.
transferase 14-jan-09 3fup
Title: crystal structures of jak1 and jak2 inhibitor complexes
Author: n. k. williams, r. s. bamert, o. patel, e. fantino, j. rossjohn, i. s. lucet
Keywords: tyrosine-protein kinase
- 3fvf.pdb.
hydrolase 15-jan-09 3fvf
Title: the crystal structure of prostasin complexed with camostat at 1.6 angstroms resolution
Author: g. spraggon, m. hornsby, a. shipway, j. l. harris, s. a. lesley
Keywords: hcap-1, channel activating protease, inhibitor, serine protease, enac, cell membrane, glycoprotein, hydrolase, membrane, protease, secreted, transmembrane, zymogen
- 3fwx.pdb.
hydrolase 19-jan-09 3fwx
Zn Se
Title: the crystal structure of the peptide deformylase from vibrio cholerae o1 biovar el tor str. n16961
Author: r. zhang, m. zhou, j. stam, w. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: structural genomics, csgid, hydrolase, niaid structural genomics, center for structural genomics of infectious diseases
- 3fzn.pdb.
lyase 26-jan-09 3fzn
Cl Mg
Title: intermediate analogue in benzoylformate decarboxylase
Author: m. bruning, m. berheide, d. meyer, r. golbik, h. bartunik, a. liese, k. tittmann
Keywords: thiamin diphosphate, intermediate analogue, aromatic hydrocarbons catabolism, calcium, decarboxylase, lyase, magnesium, mandelate pathway, metal-binding, thiamine pyrophosphate
- 3g07.pdb.
transferase 27-jan-09 3g07
Se
Title: methyltransferase domain of human bicoid-interacting protein 3 homolog (drosophila)
Author: h. wu, l. dombrovski, w. tempel, a. mccarthy, p. loppnau, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, j. min, a. n. plotnikov, h. park, structural genomics consortium (sgc)
Keywords: methyltransferase, phosphoprotein, s-adenosyl-l-methionine, transferase
- 3g1e.pdb.
structural protein 29-jan-09 3g1e
Title: x-ray crystal structure of coil 1a of human vimentin
Author: m. meier, g. p. padilla, h. herrmann, t. wedig, m. hergt, t. r. patel, j. stetefeld, u. aebi, p. burkhard
Keywords: acetylation, coiled coil, host-virus interaction, intermediate filament, phosphoprotein, structural protein
- 3g1n.pdb.
ligase 30-jan-09 3g1n
Na
Title: catalytic domain of the human e3 ubiquitin-protein ligase huwe1
Author: j. r. walker, l. qiu, y. li, t. davis, w. tempel, j. weigelt, c. bountra, c. h. arrowsmith, a. m. edwards, a. botchkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: phosphoprotein, ubl conjugation pathway, structural genomics, structural genomics consortium, sgc
- 3g2m.pdb.
transferase 31-jan-09 3g2m
Se
Title: crystal structure of the glycopeptide n-methyltransferase mtfa
Author: r. shi, a. matte, m. cygler, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: glycopeptide antibiotics biosynthesis, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 3g2o.pdb.
transferase 31-jan-09 3g2o
Title: crystal structure of the glycopeptide n-methyltransferase mtfa complexed with (s)-adenosyl-l-methionine (sam)
Author: r. shi, a. matte, m. cygler, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: glycopeptide antibiotics biosynthesis, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 3g2p.pdb.
transferase 31-jan-09 3g2p
Title: crystal structure of the glycopeptide n-methyltransferase mtfa complexed with (s)-adenosyl-l-homocysteine (sah)
Author: r. shi, a. matte, m. cygler, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: glycopeptide antibiotics biosynthesis, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 3g2q.pdb.
transferase 31-jan-09 3g2q
Title: crystal structure of the glycopeptide n-methyltransferase mtfa complexed with sinefungin
Author: r. shi, a. matte, m. cygler, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: glycopeptide antibiotics biosynthesis, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi
- 3g2y.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g2y
Title: ctx-m-9 class a beta-lactamase complexed with compound 1 (gf4)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase, plasmid, hydrolase/hydrolase inhibitor complex
- 3g2z.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g2z
Title: ctx-m-9 class a beta-lactamase complexed with compound 2 (gz2)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase, plasmid, hydrolase/hydrolase inhibitor complex
- 3g30.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g30
F
Title: ctx-m-9 class a beta-lactamase complexed with compound 3 (g30)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase, plasmid, hydrolase/hydrolase inhibitor complex
- 3g31.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g31
Title: ctx-m-9 class a beta-lactamase complexed with compound 4 (gf1)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase, plasmid, hydrolase/hydrolase inhibitor complex
- 3g32.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g32
Title: ctx-m-9 class a beta-lactamase complexed with compound 6 (3g3)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase, plasmid, hydrolase/hydrolase inhibitor complex
- 3g33.pdb.
cell cycle 01-feb-09 3g33
Title: crystal structure of cdk4/cyclin d3
Author: t. takaki, a. echalier, n. r. brown, t. hunt, j. a. endicott, m. e. m. noble
Keywords: cyclin
- 3g34.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g34
Title: ctx-m-9 class a beta-lactamase complexed with compound 11 (1ce)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase/hydrolase inhibitor, plasmid
- 3g35.pdb.
hydrolase/hydrolase inhibitor 01-feb-09 3g35
F
Title: ctx-m-9 class a beta-lactamase complexed with compound 12 (f13)
Author: y. chen, b. k. shoichet
Keywords: beta-lactamase, molecular docking, fragment, inhibitor, antibiotic resistance, hydrolase, plasmid, hydrolase/hydrolase inhibitor complex
- 3g3o.pdb.
biosynthetic protein 02-feb-09 3g3o
Se
Title: crystal structure of the cytoplasmic tunnel domain in yeast vtc2p
Author: m. hothorn, k. scheffzek
Keywords: polyphosphate kinase, vtc complex, vacuolar transporter chaperone, tunnel enzyme, membrane, phosphoprotein, transmembrane, vacuole, biosynthetic protein
- 3g3q.pdb.
biosynthetic protein 02-feb-09 3g3q
Title: crystal structure of a eukaryotic polyphosphate polymerase in complex with a phosphate polymer
Author: m. hothorn, k. scheffzek
Keywords: polyphosphate kinase, vtc complex, vacuolar transporter chaperone, tunnel enzyme, membrane, phosphoprotein, transmembrane, vacuole, biosynthetic protein
- 3g3r.pdb.
biosynthetic protein 02-feb-09 3g3r
Mn Na
Title: crystal structure of a eukaryotic polyphosphate polymerase in complex with appnhp-mn2+
Author: m. hothorn
Keywords: polyphosphate kinase, vtc complex, vacuolar transporter chaperone, tunnel enzyme, membrane, phosphoprotein, transmembrane, vacuole, biosynthetic protein
- 3g3t.pdb.
biosynthetic protein 02-feb-09 3g3t
Title: crystal structure of a eukaryotic polyphosphate polymerase in complex with orthophosphate
Author: e. d. lenherr, m. hothorn, k. scheffzek
Keywords: polyphosphate kinase, vtc complex, vacuolar transporter chaperone, tunnel enzyme, membrane, phosphoprotein, transmembrane, vacuole, biosynthetic protein
- 3g3u.pdb.
biosynthetic protein 02-feb-09 3g3u
Title: crystal structure of a eukaryotic polyphosphate polymerase in complex with pyrophosphate
Author: m. hothorn
Keywords: polyphosphate kinase, vtc complex, vacuolar transporter chaperone, tunnel enzyme, membrane, phosphoprotein, transmembrane, vacuole, biosynthetic protein
- 3g3v.pdb.
hydrolase 02-feb-09 3g3v
Cl
Title: crystal structure of spin labeled t4 lysozyme (v131r1) at 291 k
Author: m. r. fleissner, d. cascio, w. l. hubbell
Keywords: nitroxide, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3g3w.pdb.
hydrolase 02-feb-09 3g3w
Cl
Title: crystal structure of spin labeled t4 lysozyme (t151r1) at 291 k
Author: m. r. fleissner, d. cascio, w. l. hubbell
Keywords: nitroxide, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3g3x.pdb.
hydrolase 02-feb-09 3g3x
Cl
Title: crystal structure of spin labeled t4 lysozyme (t151r1) at 100 k
Author: m. r. fleissner, d. cascio, w. l. hubbell
Keywords: modified cysteine, nitroxide, antimicrobial, bacteriolytic enzyme, glycosidase
- 3g8c.pdb.
ligase 12-feb-09 3g8c
Mg
Title: crystal stucture of biotin carboxylase in complex with biotin, bicarbonate, adp and mg ion
Author: c. y. chou, l. p. yu, l. tong
Keywords: carboxylase, biotin-dependent, fatty acid synthesis, substrates bound, atp-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, nucleotide- binding
- 3g8d.pdb.
ligase 12-feb-09 3g8d
Mg
Title: crystal structure of the biotin carboxylase subunit, e296a mutant, of acetyl-coa carboxylase from escherichia coli
Author: c. y. chou, l. p. yu, l. tong
Keywords: carboxylase, biotin-dependent, fatty acid synthesis, active site mutant, atp-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, nucleotide- binding
- 3gca.pdb.
rna 21-feb-09 3gca
Title: the structural basis for recognition of the preq0 metabolite by an unusually small riboswitch aptamer domain
Author: r. c. spitale, j. e. wedekind
Keywords: preq0, riboswitch, rna, ribosomal binding site, amptamer, metabolite
- 3gdx.pdb.
transferase/dna 24-feb-09 3gdx
Cl Mg F Na
Title: dna polymerase beta with a gapped dnd substrate and dtmp(cf2)pp
Author: s. h. wilson, v. k. batra, l. c. pedersen
Keywords: sodium, transferase, transferase/dna complex
- 3gf9.pdb.
endocytosis 26-feb-09 3gf9
Title: crystal structure of human intersectin 2 rhogef domain
Author: y. shen, y. tong, w. tempel, y. li, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: guanine nucleotide exchange factor, sgc, sh3 domain, endocytosis
- 3gkv.pdb.
oxygen transport 11-mar-09 3gkv
Fe
Title: x-ray structure of an intermediate along the oxidation pathway of trematomus bernacchii hemoglobin
Author: a. merlino, l. vitagliano, f. sica, a. vergara, l. mazzarella
Keywords: intermediate quaternary structure,, acetylation, heme, iron, metal-binding, oxygen transport, transport
- 3gl6.pdb.
oxidoreductase 11-mar-09 3gl6
Zn
Title: crystal structure of jarid1a-phd3 complexed with h3(1-9) k4me3 peptide
Author: w. zhanxin, s. jikui, p. dinshaw
Keywords: transcription regulation, zinc, zinc-finger, chromosomal protein, dna- binding, nucleosome core
- 3gm1.pdb.
transferase 12-mar-09 3gm1
Title: crystal structure of the focal adhesion targeting (fat) domain of pyk2 in complex with paxillin ld4 motif-derived peptides
Author: j. e. lulo, s. yuzawa, j. schlessinger
Keywords: ld4 motif, transferase
- 3gm2.pdb.
transferase 12-mar-09 3gm2
Title: crystal structure of the focal adhesion targeting (fat) domain of pyk2
Author: j. e. lulo, s. yuzawa, j. schlessinger
Keywords: transferase
- 3gm3.pdb.
transferase 12-mar-09 3gm3
Title: crystal structure of the focal adhesion targeting (fat) domain of pyk2
Author: j. e. lulo, s. yuzawa, j. schlessinger
Keywords: transferase
- 3gpe.pdb.
signaling protein 23-mar-09 3gpe
Ca
Title: crystal structure analysis of pkc (alpha)-c2 domain complexed with ca2+ and ptdins(4,5)p2
Author: c. ferrer-orta, j. querol-audi, i. fita, n. verdaguer
Keywords: zinc, zinc-finger, signaling protein
- 3gq1.pdb.
peptide binding protein 23-mar-09 3gq1
He Hg Mg
Title: the structure of the caulobacter crescentus clps protease adaptor protein in complex with a wlfvqrdske decapeptide
Author: t. a. baker, g. roman-hernandez, r. t. sauer, r. a. grant
Keywords: protein-peptide complex, peptide-binding protein, peptide binding protein
- 3grw.pdb.
transferase/immune system 26-mar-09 3grw
Title: fgfr3 in complex with a fab
Author: c. wiesmann
Keywords: transferase/immune system complex
- 3gse.pdb.
isomerase 26-mar-09 3gse
Title: crystal structure of menaquinone-specific isochorismate synthase from yersinia pestis co92
Author: b. nocek, m. gu, l. papazisi, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: menf,yersinia pestis co92, ypo2528, csgid, isomerase, structural genomics, center for structural genomics of infectious diseases
- 3gtn.pdb.
hydrolase 27-mar-09 3gtn
Title: crystal structure of xync from bacillus subtilis 168
Author: f. j. st john, j. c. hurlbert, e. pozharski
Keywords: xylan degradation
- 3gw1.pdb.
peptide binding protein 31-mar-09 3gw1
Mg
Title: the structure of the caulobacter crescentus clps protease adaptor protein in complex with fgg tripeptide
Author: t. a. baker, g. roman-hernandez, r. t. sauer, r. a. grant
Keywords: protein-peptide complex, peptide-binding protein, peptide binding protein
- 3gwd.pdb.
oxidoreductase 31-mar-09 3gwd
Title: closed crystal structure of cyclohexanone monooxygenase
Author: i. a. mirza, b. j. yachnin, a. m. berghuis
Keywords: monooxygenase, oxidoreductase
- 3gwf.pdb.
oxidoreductase 01-apr-09 3gwf
Title: open crystal structure of cyclohexanone monooxygenase
Author: i. a. mirza, b. j. yachnin, a. m. berghuis
Keywords: monooxygenase, oxidoreductase
- 3gwj.pdb.
oxygen transport 01-apr-09 3gwj
Title: crystal structure of antheraea pernyi arylphorin
Author: k. s. ryu, j. o. lee, t. h. kwon, s. kim
Keywords: mono-glucosylated n-glycan, stability, glycosylation, glycoprotein, secreted, storage protein, oxygen transport
- 3gxb.pdb.
cell adhesion 02-apr-09 3gxb
Title: crystal structure of vwf a2 domain
Author: y. f. zhou, t. a. springer
Keywords: ubl conjugation, von willebrand disease
- 3gxd.pdb.
hydrolase 02-apr-09 3gxd
Title: crystal structure of apo acid-beta-glucosidase ph 4.5
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxf.pdb.
hydrolase 02-apr-09 3gxf
Title: crystal structure of acid-beta-glucosidase with isofagomine at neutral ph
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxi.pdb.
hydrolase 02-apr-09 3gxi
Title: crystal structure of acid-beta-glucosidase at ph 5.5
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxm.pdb.
hydrolase 02-apr-09 3gxm
Title: crystal structure of acid-beta-glucosidase at ph 4.5, phosphate crystallization condition
Author: r. l. lieberman
Keywords: polymorphism, sphingolipid metabolism
- 3gxn.pdb.
hydrolase 02-apr-09 3gxn
Title: crystal structure of apo alpha-galactosidase a at ph 4.5
Author: r. l. lieberman
Keywords: disease mutation, disulfide bond, glycoprotein, glycosidase, lysosome, pharmaceutical, rna editing
- 3gxp.pdb.
hydrolase 02-apr-09 3gxp
Title: crystal structure of acid-alpha-galactosidase a complexed with galactose at ph 4.5
Author: r. l. lieberman
Keywords: disease mutation, disulfide bond, glycoprotein, glycosidase, lysosome, pharmaceutical, rna editing
- 3gxy.pdb.
antiviral protein 03-apr-09 3gxy
Mg
Title: crystal structure of cyanovirin-n complexed to a synthetic hexamannoside
Author: i. botos, b. r. o'keefe, s. r. shenoy, p. h. seeberger, m. r. boyd, a. wlodawer
Keywords: hiv-inactivating, domain-swapping, gp120, man- 9, oligosaccharide, antiviral protein, disulfide bond, protein synthesis inhibitor
- 3gyl.pdb.
hydrolase 03-apr-09 3gyl
Ca
Title: structure of prostasin at 1.3 angstroms resolution in complex with a calcium ion.
Author: g. spraggon, m. hornsby, a. shipway, j. l. harris, s. a. lesley
Keywords: enac, zymogen, divalent cation, channel activating, cell membrane, disulfide bond, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, transmembrane
- 3gym.pdb.
hydrolase/inhibitor 03-apr-09 3gym
Title: structure of prostasin in complex with aprotinin
Author: g. spraggon, m. hornsby, a. shipway, j. l. harris, s. a. lesley
Keywords: serine protease, transmembrane, zymogen, hydrolase/inhibitor complex
- 3h03.pdb.
membrane protein 08-apr-09 3h03
Zn
Title: crystal structure of the binding domain of the ampa subunit glur2 bound to ubp277
Author: a. h. ahmed, r. e. oswald
Keywords: glur2, ampa receptor, neurotransmitter receptor, s1s2, membrane protein
- 3h06.pdb.
membrane protein 08-apr-09 3h06
Title: crystal structure of the binding domain of the ampa subunit glur2 bound to the willardiine antagonist, ubp282
Author: a. h. ahmed, r. e. oswald
Keywords: glur2, ampa receptor, neurotransmitter receptor, s1s2, willardiine, membrane protein
- 3h07.pdb.
lyase 08-apr-09 3h07
Title: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase from yersinia pestis co92
Author: b. nocek, m. gu, k. kwon, w. f. anderson, a joachimiak, csgid, center for structural genomics of infectious diseases (csgid)
Keywords: national institute of allergy and infectious diseases, center for structural genomics of infectious diseases
- 3h14.pdb.
transferase 10-apr-09 3h14
Se
Title: crystal structure of a putative aminotransferase from silicibacter pomeroyi
Author: p. sampathkumar, s. atwell, s. wasserman, s. miller, k. bain, m. rutter, g. tarun, j. m. sauder, s. k. burley, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics
- 3h1s.pdb.
oxidoreductase 13-apr-09 3h1s
Fe
Title: crystal structure of superoxide dismutase from francisella tularensis subsp. tularensis schu s4
Author: b. nocek, m. zhou, l papazisi, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: superoxide dismutase, csgid, oxidoreductase, structural genomics, national institute of allergy and infectious diseases, center for structural genomics of infectious diseases
- 3h1u.pdb.
signaling protein 14-apr-09 3h1u
Cd
Title: structure of ubiquitin in complex with cd ions
Author: i. a. qureshi, f. ferron, p. cheung, j. lescar
Keywords: cytoplasm, isopeptide bond, nucleus, phosphoprotein, ubl conjugation, signaling protein
- 3h3h.pdb.
structural genomics, unknown function 16-apr-09 3h3h
Se
Title: crystal structure of snoal-like protein of unknown function (yp_438428.1) from burkholderia thailandensis e264 at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: snoal-like protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3h3z.pdb.
cyclic nucleotide-binding protein 17-apr-09 3h3z
Cl Se
Title: crystal structure of putative camp-binding regulatory protein (yp_165150.1) from silicibacter pomeroyi dss-3 at 2.35 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: cyclic nucleotide-binding protein
- 3h41.pdb.
hydrolase 17-apr-09 3h41
Se
Title: crystal structure of nlpc/p60 family protein (np_979181.1) from bacillus cereus atcc 10987 at 1.79 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: nlpc/p60 family protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
- 3h42.pdb.
hydrolase/immune system 17-apr-09 3h42
Na
Title: crystal structure of pcsk9 in complex with fab from ldlr competitive antibody
Author: d. e. piper, n. p. c. walker, w. g. romanow, s. t. thibault, m. m. tsai, e. yang
Keywords: protease, secreted, serine protease, steroid metabolism, zymogen, hydrolase/immune system complex
- 3h4g.pdb.
oxidoreductase 20-apr-09 3h4g
F
Title: structure of aldehyde reductase holoenzyme in complex with potent aldose reductase inhibitor fidarestat: implications for inhibitor binding and selectivity
Author: v. carbone, o. el-kabbani
Keywords: aldo-keto reductase, ternary complex, nadp, oxidoreductase
- 3h4q.pdb.
transferase 20-apr-09 3h4q
Se
Title: crystal structure of putative acetyltransferase (np_371943.1) from staphylococcus aureus mu50 at 2.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative acetyltransferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3h4v.pdb.
oxidoreductase 21-apr-09 3h4v
Title: selective screening and design to identify inhibitors of leishmania major pteridine reductase 1
Author: k. mcluskey, f. gibellini, w. n. hunter
Keywords: leishmania, trypanosoma, ptr1, inhibitor, oxidoreductase, methotrexate resistance, nadp
- 3h4y.pdb.
hydrolase 21-apr-09 3h4y
Se
Title: crystal structure of putative chemotaxis protein (yp_009526.1) from desulfovibrio vulgaris hildenborough at 1.55 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative chemotaxis protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
- 3h50.pdb.
biosynthetic protein 21-apr-09 3h50
Zn Se
Title: crystal structure of tetracenomycin polyketide synthesis protein (np_636471.1) from xanthomonas campestris at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: tetracenomycin polyketide synthesis protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, cupin domain, biosynthetic protein
- 3h51.pdb.
protein binding 21-apr-09 3h51
Se
Title: crystal structure of putative calcium/calmodulin dependent protein kinase ii association domain (np_636218.1) from xanthomonas campestris at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: protein binding
- 3h57.pdb.
oxygen storage, oxygen transport 21-apr-09 3h57
Fe
Title: myoglobin cavity mutant h64lv68n deoxy form
Author: j. soman, j. s. olson
Keywords: active site hydration, ligand entry and exit, oxygen storage and transport, heme, iron, metal-binding, muscle protein, oxygen transport, transport, oxygen storage
- 3h58.pdb.
oxygen storage, oxygen transport 21-apr-09 3h58
Fe
Title: myoglobin cavity mutant h64lv68n met form
Author: j. soman, j. s. olson
Keywords: active site hydration, ligand entry and exit, oxygen storage and transport, heme, iron, metal-binding, muscle protein, oxygen transport, transport, oxygen storage
- 3h5i.pdb.
transcription 22-apr-09 3h5i
Cl Na
Title: crystal structure of the n-terminal domain of a response regulator/sensory box/ggdef 3-domain protein from carboxydothermus hydrogenoformans
Author: j. b. bonanno, m. gilmore, k. t. bain, m. iizuka, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: transcription, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3h5l.pdb.
transport protein 22-apr-09 3h5l
Title: crystal structure of a putative branched-chain amino acid abc transporter from silicibacter pomeroyi
Author: j. b. bonanno, j. freeman, k. t. bain, m. iizuka, p. sampathkumar, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: transporter, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, transport protein
- 3h5o.pdb.
transcription regulator 22-apr-09 3h5o
Se
Title: the crystal structure of transcription regulator gntr from chromobacterium violaceum
Author: z. zhang, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, nysgxrc
- 3h5t.pdb.
transcription regulator 22-apr-09 3h5t
Title: crystal structure of a transcriptional regulator, lacl family protein from corynebacterium glutamicum
Author: k. palani, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: transcription regulation, transcription regulator
- 3h6l.pdb.
transferase 23-apr-09 3h6l
Zn
Title: methyltransferase domain of human set domain-containing protein 2
Author: m. f. amaya, h. zeng, f. mackenzie, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, j. min, h. wu, structural genomics consortium (sgc)
Keywords: methylation, nucleus, phosphoprotein, polymorphism, transcription, transcription regulation, transferase
- 3h6o.pdb.
transferase 23-apr-09 3h6o
F
Title: activator-bound structure of human pyruvate kinase m2
Author: b. hong, s. dimov, w. tempel, d. auld, c. thomas, m. boxer, j. -k. jianq, a. skoumbourdis, s. min, n. southall, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, j. inglese, h. park, structural genomics consortium (sgc)
Keywords: structural genomics consortium, sgc
- 3h70.pdb.
lyase 24-apr-09 3h70
Mg
Title: crystal structure of o-succinylbenzoic acid synthetase from staphylococcus aureus complexed with mg in the active site
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: nysgxrc, target 9307b, osbs, psi-2, protein structure initiative, new york sgx research center for structural genomics, lyase
- 3h7a.pdb.
oxidoreductase 24-apr-09 3h7a
Title: crystal structure of short-chain dehydrogenase from rhodopseudomonas palustris
Author: y. patskovsky, r. toro, c. morano, j. freeman, s. miller, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: dehydrogenase, psi-2, nysgxrc, structural genomics, protein structure initiative, new york sgx research center for structural genomics
- 3h7e.pdb.
hydrolase 24-apr-09 3h7e
Se
Title: crystal structure of an n-type atp pyrophosphatase (pf0828) in complex with amp from pyrococcus furiosus, northeast structural genomics consortium target pfr23
Author: f. forouhar, n. saadat, m. hussain, j. seetharaman, j. janjua, r. xiao, k. cunningham, l. ma, r. shastry, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, hydrolase
- 3h7f.pdb.
transferase 24-apr-09 3h7f
Mg
Title: crystal structure of serine hydroxymethyltransferase from mycobacterium tuberculosis
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: serine hydroxymethyltransferase, cytoplasm, one-carbon metabolism, pyridoxal phosphate, transferase, structural genomics, seattle structural genomics center for infectious disease, ssgcid
- 3h87.pdb.
toxin/antitoxin 28-apr-09 3h87
Mg
Title: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
Author: a. min, m. r. sawaya, d. cascio, d. eisenberg, integrated center for structure and function innovation (isfi)
Keywords: rhh motif, structural genomics, tuberculosis, integrated center for structure and function innovation, isfi, toxin/antitoxin complex, psi-2, protein structure initiative
- 3min.pdb.
nitrogen fixation 20-dec-96 3min
Mo Fe Ca
Title: nitrogenase mofe protein from azotobacter vinelandii, oxidized state
Author: j. w. peters, m. h. b. stowell, s. m. soltis, m. w. day, j. kim, d. c. rees
Keywords: nitrogen metabolism, oxidoreductase, molybdoenzymes, biological nitrogen fixation
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