Recent PDB releases or updates: week of 24 April 2009

1e6n.pdb. hydrolase 21-aug-00 1e6n
Title: chitinase b from serratia marcescens inactive mutant e144q in complex with n-acetylglucosamine-pentamer
Author: d. komander, b. synstad, v. g. h. eijsink, d. m. f. van aalten
Keywords: hydrolase, glycosidase
1e6p.pdb. hydrolase 22-aug-00 1e6p
Title: chitinase b from serratia marcescens inactive mutant e144q
Author: d. komander, b. synstad, v. g. h. eijsink, d. m. f. van aalten
Keywords: hydrolase, glycosidase
1e6u.pdb. epimerase/reductase 23-aug-00 1e6u
Title: gdp 4-keto-6-deoxy-d-mannose epimerase reductase
Author: c. rosano, g. izzo, m. bolognesi
Keywords: sdr, red
1e7w.pdb. oxidoreductase 11-sep-00 1e7w
Title: one active site, two modes of reduction correlate the mechanism of leishmania pteridine reductase with pterin metabolism and antifolate drug resistance in trpanosomes
Author: d. g. gourley, w. n. hunter
Keywords: pteridine reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase
1ea5.pdb. hydrolase 06-nov-00 1ea5
Title: native acetylcholinesterase (e.c. 3.1.1.7) from torpedo californica at 1.8a resolution
Author: m. harel, m. weik, i. silman, j. l. sussman
Keywords: serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase
1fv3.pdb. toxin 18-sep-00 1fv3 Si
Title: the hc fragment of tetanus toxin complexed with an analogue of its ganglioside receptor gt1b
Author: c. fotinou, p. emsley, i. black, h. ando, h. ishida, m. kiso, k. a. sinha, n. f. fairweather, n. w. isaacs
Keywords: carbohydrate, ganglioside, multi-valent binding, receptor
1gt3.pdb. lipocalin 10-jan-02 1gt3
Title: complex of bovine odorant binding protein with dihydromyrcenol
Author: f. vincent, r. ramoni, s. spinelli, s. grolli, v. conti, c. cambillau, m. tegoni
Keywords: bovine odorant binding protein
1gt9.pdb. hydrolase 14-jan-02 1gt9 Ca
Title: high resolution crystal structure of a thermostable serine-carboxyl type proteinase, kumamolisin (kscp)
Author: m. comellas-bigler, p. fuentes-prior, k. maskos, r. huber, h. oyama, k. uchida, b. m. dunn, k. oda, w. bode
Keywords: serine-carboxyl type proteinase, thermostable
1h8x.pdb. hydrolase 16-feb-01 1h8x
Title: domain-swapped dimer of a human pancreatic ribonuclease variant
Author: a. canals, j. pous, a. guasch, a. benito, m. ribo, m. vilanova, m. coll
Keywords: ribonuclease, rnase, human pancreatic ribonuclease, domain- swapped dimer
1j6y.pdb. isomerase 15-may-01 1j6y He Hg (solution NMR)
Title: solution structure of pin1at from arabidopsis thaliana
Author: i. landrieu, j. m. wieruszeski, r. wintjens, d. inze, g. lippens
Keywords: parvulin, pin1, phosphorylation
1k8v.pdb. unknown function 25-oct-01 1k8v He Hg (solution NMR)
Title: the nmr-derived conformation of neuropeptide f from moniezia expansa
Author: m. miskolzie, g. kotovych
Keywords: moniezia expansa, npf, unknown function
1n89.pdb. lipid transport 20-nov-02 1n89 He Hg (solution NMR)
Title: solution structure of a liganded type 2 wheat non-specific lipid transfer protein
Author: j. l. pons, f. de lamotte, m. f. gautier, m. a. delsuc
Keywords: lipid transport
1obb.pdb. hydrolase 29-jan-03 1obb
Title: alpha-glucosidase a, agla, from thermotoga maritima in complex with maltose and nad+
Author: j. a. lodge, t. maier, w. liebl, v. hoffmann, n. strater
Keywords: sulfinic acid, nad+, maltose, hydrolase
1ojn.pdb. lyase 11-jul-03 1ojn
Title: specificity and mechanism of streptococcus pneumoniae hyaluronate lyase: complex of the tyr408phe mutant with 6-sulphated chondroitin disaccharide
Author: d. j. rigden, m. j. jedrzejas
Keywords: protein-carbohydrate complex
1ojp.pdb. lyase 11-jul-03 1ojp
Title: specificity and mechanism of streptococcus pneumoniae hyaluronate lyase: complex with 6-sulphated chondroitin disaccharide
Author: d. j. rigden, m. j. jedrzejas
Keywords: protein-carbohydrate complex
1pav.pdb. structural genomics 14-may-03 1pav He Hg (solution NMR)
Title: solution nmr structure of hypothetical protein ta1414 of thermoplasma acidophilum
Author: d. monleon, a. yee, c. s. liu, c. arrowsmith, b. celda
Keywords: thermoplasma acidophilum, nmr structure, fast nmr, semiautomated analysis
1pm6.pdb. gene regulation 10-jun-03 1pm6 He Hg (solution NMR)
Title: solution structure of full-length excisionase (xis) from bacteriophage hk022
Author: v. v. rogov, c. luecke, l. muresanu, h. wienk, i. kleinhaus, k. werner, f. loehr, p. pristovsek, h. rueterjans
Keywords: winged-helix, cis-trans-trans triproline, gene regulation
1qvp.pdb. dna binding protein 28-aug-03 1qvp He Hg (solution NMR)
Title: c terminal sh3-like domain from diphtheria toxin repressor residues 144-226.
Author: g. p. wylie, v. rangachari, e. a. bienkiewicz, v. marin, n. bhattacharya, j. f. love, j. r. murphy, t. m. logan
Keywords: dtxr, c-terminal domain, prokaryotic sh3 domain, transcription regulation, peptide-binding, gene regulation, dna binding protein
1scu.pdb. ligase (atp-binding) 18-nov-93 1scu
Title: the crystal structure of succinyl-coa synthetase from escherichia coli at 2.5 angstroms resolution
Author: w. t. wolodko, m. e. fraser, m. n. g. james, w. a. bridger
1siy.pdb. lipid binding protein 02-mar-04 1siy He Hg (solution NMR)
Title: nmr structure of mung bean non-specific lipid transfer protein 1
Author: k. f. lin, y. n. liu, s. t. d. hsu, d. samuel, c. s. cheng, a. m. j. j. bonvin, p. c. lyu
Keywords: lipid binding protein
1soh.pdb. lipid transport 14-mar-04 1soh He Hg (solution NMR)
Title: the structure of human apolipoprotein c-ii in dodecyl phosphocholine
Author: c. a. macraild, g. j. howlett, p. r. gooley
1ttt.pdb. complex (elongation factor/trna) 16-nov-95 1ttt Mg
Title: phe-trna, elongation factor ef-tu:gdpnp ternary complex
Author: p. nissen, m. kjeldgaard, s. thirup, g. polekhina, l. reshetnikova, b. f. c. clark, j. nyborg
Keywords: ef-tu, trna, ribosome, 1eft, 4tna, peptide elongation ribonucleoprotein, complex (elongation factor/trna)
1u7n.pdb. structural genomics, unknown function 04-aug-04 1u7n Se
Title: crystal structure of the fatty acid/phospholipid synthesis protein plsx from enterococcus faecalis v583
Author: y. kim, h. li, f. collart, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: fatty acid/phospholipid synthesis, plsx, enterococcus faecalis v583, psi, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
1w8x.pdb. virus 01-oct-04 1w8x
Title: structural analysis of prd1
Author: n. g. a. abrescia, j. j. b. cockburn, j. m. grimes, g. c. sutton, j. m. diprose, s. j. butcher, s. d. fuller, c. san martin, r. m. burnett, d. i. stuart, d. h. bamford, j. k. h. bamford
Keywords: p3 major capsid protein, p30 tape measure, p31 penton protein, p16 membrane protein, virus/viral protein, icosahedral virus
1wm4.pdb. protein binding 03-jul-04 1wm4 He Hg (solution NMR)
Title: solution structure of mouse coactosin, an actin filament binding protein
Author: m. hellman, v. o. paavilainen, p. naumanen, p. lappalainen, a. annila, p. permi
Keywords: protein binding
1ykg.pdb. electron transport 18-jan-05 1ykg He Hg Ho (solution NMR)
Title: solution structure of the flavodoxin-like domain from the escherichia coli sulfite reductase
Author: n. sibille, m. blackledge, b. brutscher, j. coves, b. bersch
Keywords: electron transport
1yl3.pdb. ribosome 19-jan-05 1yl3
Title: crystal structure of 70s ribosome with thrs operator and trnas. large subunit. the coordinates for the small subunit are in the pdb entry 1yl4.
Author: l. jenner, p. romby, b. rees, c. schulze-briese, m. springer, c. ehresmann, b. ehresmann, d. moras, g. yusupova, m. yusupov
Keywords: mrna, translational operator
1yl4.pdb. ribosome 19-jan-05 1yl4
Title: crystal structure of 70s ribosome with thrs operator and trnas. 30s subunit. the coordinates for the 50s subunit are in the pdb entry 1yl3
Author: l. jenner, p. romby, b. rees, c. schulze-briese, m. springer, c. ehresmann, b. ehresmann, d. moras, g. yusupova, m. yusupov
Keywords: mrna, translational operator
2arw.pdb. cytokine 22-aug-05 2arw He Hg (solution NMR)
Title: the solution structure of the membrane proximal cytokine receptor domain of the human interleukin-6 receptor
Author: o. hecht, a. j. dingley, a. schwantner, s. ozbek, s. rose-john, j. grotzinger
Keywords: cytokine
2bw4.pdb. oxidoreductase 12-jul-05 2bw4 Cu
Title: atomic resolution structure of resting state of the achromobacter cycloclastes cu nitrite reductase
Author: s. v. antonyuk, r. w. strange, g. sawers, r. r. eady, s. s. hasnain
Keywords: denitrification, catalysis, enzyme mechanism, nitrate assimilation
2c3f.pdb. lyase 06-oct-05 2c3f Na
Title: the structure of a group a streptococcal phage-encoded tail-fibre showing hyaluronan lyase activity.
Author: e. j. taylor, n. l. smith, a. -m. linsay, s. j. charnock, j. p. turkenburg, e. j. dodson, g. j. davies, g. w. black
Keywords: hyaluronan lyase, phage tail fibre, triple-stranded beta- helix, hyaluronidase, scarlet fever
2c4h.pdb. hydrolase 19-oct-05 2c4h Cl
Title: torpedo californica acetylcholinesterase in complex with 500mm acetylthiocholine
Author: j. p. colletier, d. fournier, h. m. greenblatt, j. l. sussman, g. zaccai, i. silman, m. weik
Keywords: serine esterase, synapse, membrane, neurotransmitter cleavage, alpha/beta hydrolase, substrate- inhibition, alternative splicing, glycoprotein, gpi-anchor, lipoprotein, neurotransmitter degradation
2caq.pdb. transferase 22-dec-05 2caq
Title: structure of r21l mutant of sh28gst in complex with gsh
Author: p. baiocco, l. j. gourlay, f. angelucci, a. bellelli, a. e. miele, m. brunori
Keywords: detoxification, glutathione, prostaglandin d2 synthase, transferase, antigen
2cib.pdb. oxidoreductase 17-mar-06 2cib Fe
Title: high throughput screening and x-ray crystallography assisted evaluation of small molecule scaffolds for cyp51 inhibitors
Author: l. m. podust, y. kim, l. v. yermalitskaya, j. p. von kries, m. r. waterman
Keywords: heme lipid synthesis, metal-binding, monooxygenase, nadp, oxidoreductase, protein-inhibitor complex, steroid biosynthesis, sterol biosynthesis
2fg6.pdb. transferase 21-dec-05 2fg6
Title: n-succinyl-l-ornithine transcarbamylase from b. fragilis complexed with sulfate and n-succinyl-l-norvaline
Author: d. shi, x. yu, m. h. malamy, n. m. allewell, t. mendel
Keywords: transferase
2fg7.pdb. transferase 21-dec-05 2fg7
Title: n-succinyl-l-ornithine transcarbamylase from b. fragilis complexed with carbamoyl phosphate and n-succinyl-l- norvaline
Author: d. shi, x. yu, m. h. malamy, n. m. allewell, m. tuchman
Keywords: transferase
2j8z.pdb. oxidoreductase 31-oct-06 2j8z
Title: crystal structure of human p53 inducible oxidoreductase ( tp53i3,pig3)
Author: a. c. w. pike, n. shafqat, j. debreczeni, c. johansson, a. haroniti, o. gileadi, c. h. arrowsmith, a. edwards, j. weigelt, m. sundstrom, f. von delft, s. porte, i. fita, j. pares, x. pares, u. oppermann
Keywords: oxidoreductase, alternative splicing, quinone oxidoreductase, oxidative stress response
2jj4.pdb. transcription 04-jul-07 2jj4
Title: the complex of pii and acetylglutamate kinase from synechococcus elongatus pcc7942
Author: j. l. llacer, c. marco-marin, f. gil-ortiz, i. fita, v. rubio
Keywords: arginine biosynthesis, amino-acid biosynthesis, glnb, kinase, trimer, hexamer, atp-binding
2jqc.pdb. toxin 31-may-07 2jqc Hg (solution NMR)
Title: a l-amino acid mutant of a d-amino acid containing conopeptide
Author: f. huang, w. du, y. han, c. wang, c. chi
Keywords: mr12, nmr solution structure
2k13.pdb. toxin 20-feb-08 2k13 He Hg (solution NMR)
Title: solution nmr structure of the leech protein saratin, a novel inhibitor of haemostasis
Author: w. gronwald, j. bomke, t. maurer, b. wisotzki, f. huber, f. schumann, w. kremer, m. frech, h. r. kalbitzer
Keywords: mixed alpha/beta structure, fold typical for pan domains, toxin
2k2v.pdb. calcium-binding protein 13-apr-08 2k2v He Hg Ca (solution NMR)
Title: anabaena ccbp in the calcium-bound form
Author: y. hu, x. zhang, c. jin
Keywords: calcium-binding protein
2k8h.pdb. signaling protein 10-sep-08 2k8h He Hg (solution NMR)
Title: solution structure of sumo from trypanosoma brucei
Author: q. shang, x. tu
Keywords: trypanosoma brucei, nmr, post-translational modifier, signaling protein
2ka4.pdb. transcription regulator 30-oct-08 2ka4 He Hg Zn (solution NMR)
Title: nmr structure of the cbp-taz1/stat2-tad complex
Author: j. m. wojciak, m. a. martinez-yamout, h. j. dyson, p. e. wright
Keywords: transcription, transcription regulation, transcription regulator
2ka6.pdb. transcription regulator 30-oct-08 2ka6 He Hg Zn (solution NMR)
Title: nmr structure of the cbp-taz2/stat1-tad complex
Author: j. m. wojciak, m. a. martinez-yamout, h. j. dyson, p. e. wright
Keywords: zinc-finger
2kbc.pdb. hormone 25-nov-08 2kbc He Hg (solution NMR)
Title: solution structure of human insulin-like peptide 5 (insl5)
Author: k. j. rosengren, l. m. haugaard-jonsson
Keywords: relaxin, insulin-like fold
2kbq.pdb. structural protein 05-dec-08 2kbq He Hg (solution NMR)
Title: solution structure of harmonin n terminal domain
Author: m. zhang, l. pan, j. yan, l. wu
Keywords: alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism, retinitis pigmentosa, sensory transduction, usher syndrome, vision, structural protein
2kbr.pdb. structural protein/cell adhesion 05-dec-08 2kbr He Hg (solution NMR)
Title: solution structure of harmonin n terminal domain in complex with a internal peptide of cadherin23
Author: l. pan, j. yan, l. wu, m. zhang
Keywords: disease mutation, glycoprotein, membrane, phosphoprotein, transmembrane, structural protein/cell adhesion complex
2kbs.pdb. structural protein/cell adhesion 05-dec-08 2kbs He Hg (solution NMR)
Title: solution structure of harmonin pdz2 in complex with the carboxyl tail peptide of cadherin23
Author: l. pan, j. yan, l. wu, m. zhang
Keywords: disease mutation, glycoprotein, membrane, phosphoprotein, transmembrane, structural protein/cell adhesion complex
2kd9.pdb. dna 05-jan-09 2kd9 Ho (solution NMR)
Title: solution structure of dna containing alpha-oh-pdg: the mutagenic adduct produced by acrolein
Author: c. de los santos, t. zaliznyak, f. johnson, r. bonala, s. attaluri
Keywords: dna damaged, dna structure, exocyclic, propano-dg lesions
2kda.pdb. dna 05-jan-09 2kda Ho (solution NMR)
Title: solution structure of dna containing alpha-oh-pdg: the mutagenic adduct produced by acrolein
Author: c. de los santos, t. zaliznyak, f. johnson, r. bonala, s. attaluri
Keywords: dna damaged, dna structure, exocyclic, propano-dg lesions
2khn.pdb. signaling protein 09-apr-09 2khn He Hg (solution NMR)
Title: nmr solution structure of the eh 1 domain from human intersectin-1 protein. northeast structural genomics consortium target hr3646e.
Author: j. l. mills, a. ghosh, e. garcia, q. zhang, r. shastry, e. l. foote, h. janjua, t. b. acton, r. xiao, j. k. everett, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: synaptosome, signaling protein, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium
2khv.pdb. structural genomics, unknown function 13-apr-09 2khv He Hg (solution NMR)
Title: solution nmr structure of protein nmul_a0922 from nitrosospira multiformis. northeast structural genomics consortium target nmr38b.
Author: y. wu, j. l. mills, d. wang, c. ciccosanti, d. k. sukumaran, m. jiang, e. garcia, r. nair, b. rost, g. v. t. swapna, t. b. acton, r. xiao, j. everett, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: gft, nmr, nesg, structural genomics, unknown function, psi-2, protein structure initiative, northeast structural genomics consortium
2pjf.pdb. hydrolase 16-apr-07 2pjf He Hg (solution NMR)
Title: solution structure of rhodostomin
Author: w. j. chuang, y. c. chen, c. y. chen, y. t. chang
Keywords: rhodostomin, hydrolase
2pjg.pdb. hydrolase 16-apr-07 2pjg He Hg (solution NMR)
Title: solution structure of rhodostomin d51e mutant
Author: w. j. chuang, y. c. chen, c. y. chen, l. j. chou
Keywords: rhodostomin, hydrolase
2poa.pdb. lipid binding protein 26-apr-07 2poa He Hg (solution NMR)
Title: schistosoma mansoni sm14 fatty acid-binding protein: improvement of protein stability by substitution of the single cys62 residue
Author: c. r. r. ramos, s. oyama jr. , m. l. sforca, t. a. pertinhez, p. l. ho, a. spisni
Keywords: fatty acid binding protein, site directed mutagenesis, protein stability, molecular dynamics, vaccine antigen, lipid binding protein
2qrf.pdb. fluorescent protein 28-jul-07 2qrf Mg
Title: green fluorescent protein: cyclized-only intermediate of chromophore maturation in the q183e variant
Author: t. i. wood, d. p. barondeau, c. hitomi, j. a. tainer, e. d. getzoff
Keywords: chromophore, gfp, luminescence, photoprotein, fluorescent protein
2qt2.pdb. fluorescent protein 31-jul-07 2qt2
Title: cyclized-dehydrated intermediate of gfp variant q183e in chromophore maturation
Author: t. i. wood, d. p. barondeau, c. hitomi, j. a. tainer, e. d. getzoff
Keywords: chromophore maturation, cyclized, dehydrated intermediate, chromophore, luminescence, photoprotein, fluorescent protein
2qz0.pdb. fluorescent protein 15-aug-07 2qz0 He Hg Mg Ho
Title: mature q183e variant of green fluorescent protein chromophore
Author: t. i. wood, d. p. barondeau, c. hitomi, j. a. tainer, e. d. getzoff
Keywords: chromophore maturation, mature form q183e, chromophore, luminescence, photoprotein, fluorescent protein
2ror.pdb. signaling protein 08-apr-08 2ror He Hg (solution NMR)
Title: solution structure of the vav1 sh2 domain complexed with a tyrosine-phosphorylated peptide from slp76
Author: m. tanaka, t. kasai, s. koshiba, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
2v17.pdb. immune system 22-may-07 2v17
Title: structure of the complex of antibody mn423 with a fragment of tau protein
Author: j. sevcik, r. skrabana, n. csokova, r. dvorsky, m. novak
Keywords: tau protein, alzheimer's disease, immune system
2vsz.pdb. apoptosis 01-may-08 2vsz
Title: crystal structure of the elmo1 ph domain
Author: d. komander, m. patel, d. barford, j. -f. cote
Keywords: pleckstrin homology, sh3-binding, phagocytosis, phosphoprotein, elmo, dock180, membrane, apoptosis, cytoplasm, alternative splicing, phosphoinositide binding, guanine nucleotide exchange factor
2vyq.pdb. oxidoreductase 28-jul-08 2vyq
Title: ferredoxin:nadp reductase mutant with thr 155 replaced by gly, ala 160 replaced by thr, leu 263 replaced by pro and tyr 303 replaced by ser (t155g-a160t-l263p-y303s)
Author: b. herguedas, m. martinez-julvez, j. a. hermoso, j. r. peregrina, m. medina
Keywords: oxidoreductase, fad, nadp, membrane, thylakoid, flavoprotein
2vzl.pdb. oxidoreductase 28-jul-08 2vzl
Title: ferredoxin-nadp reductase (mutations: t155g, a160t, l263p and y303s) complexed with nad by cocrystallization
Author: b. herguedas, m. martinez-julvez, j. a. hermoso, j. r. peregrina, m. medina
Keywords: oxidoreductase, fad, nadp, membrane, thylakoid, flavoprotein
2w2j.pdb. lyase 31-oct-08 2w2j Cl
Title: crystal structure of the human carbonic anhydrase related protein viii
Author: a. kramm, j. r. c. muniz, s. picaud, f. von delft, e. pilka, w. w. yue, o. n. f. king, g. kochan, a. c. w. pike, p. filippakopoulos, c. arrowsmith, m. wikstrom, a. edwards, c. bountra, u. oppermann
Keywords: lyase, metal-binding
2w35.pdb. hydrolase 06-nov-08 2w35 Mg
Title: structures of endonuclease v with dna reveal initiation of deaminated adenine repair
Author: b. dalhus, a. s. arvai, i. rosnes, o. e. olsen, p. h. backe, i. alseth, h. gao, w. cao, j. a. tainer, m. bjoras
Keywords: endonuclease, endonucleasev, hydrolase, inosine, dna damage, dna repair
2w36.pdb. hydrolase 06-nov-08 2w36 Br
Title: structures of endonuclease v with dna reveal initiation of deaminated adenine repair
Author: b. dalhus, a. s. arvai, i. rosnes, o. e. olsen, p. h. backe, i. alseth, h. gao, w. cao, j. a. tainer, m. bjoras
Keywords: endonuclease, endonucleasev, hydrolase, inosine, dna damage, dna repair
2w3x.pdb. hydrolase 17-nov-08 2w3x
Title: crystal structure of a bifunctional hotdog fold thioesterase in enediyne biosynthesis, cale7
Author: m. kotaka, r. kong, i. qureshi, q. s. ho, h. sun, c. w. liew, l. p. goh, p. cheung, y. mu, j. lescar, z. x. liang
Keywords: hotdog fold, thioesterase, enediyne biosynthesis
2w84.pdb. protein transport 09-jan-09 2w84 He Hg (solution NMR)
Title: structure of pex14 in compex with pex5
Author: c. neufeld, f. v. filipp, b. simon, a. neuhaus, n. schueller, c. david, h. kooshapur, t. madl, r. erdmann, w. schliebs, m. wilmanns, m. sattler
Keywords: receptor-cargo complex, peroxisome targeting signal, pts, pex5, pex14, membrane, cytoplasm, transport
2w85.pdb. protein transport 09-jan-09 2w85 He Hg (solution NMR)
Title: structure of pex14 in compex with pex19
Author: c. neufeld, f. v. filipp, b. simon, a. neuhaus, n. schueller, c. david, h. kooshapur, t. madl, r. erdmann, w. schliebs, m. wilmanns, m. sattler
Keywords: membrane, cytoplasm, transport, protein transport, peroxisome import, peroxisome biogenesis, receptor-cargo complex
2wc2.pdb. transcription regulator 06-mar-09 2wc2 He Hg (solution NMR)
Title: nmr structure of catabolite activator protein in the unliganded state
Author: n. popovych, s. r. tzeng, c. g. kalodimos
Keywords: dna-binding protein, camp, activator, acetylation, dna-binding
2wd9.pdb. ligase 21-mar-09 2wd9 Mg
Title: crystal structure of human acyl-coa synthetase medium-chain family member 2a (l64p mutation) in complex with ibuprofen
Author: w. w. yue, g. t. kochan, e. s. pilka, c. bhatia, f. von delft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, u. oppermann
Keywords: atp-binding, polymorphism
2wes.pdb. antifungal protein 01-apr-09 2wes Cl
Title: crystal structures of mutant e46q of tryptophan 5- halogenase (pyrh)
Author: x. zhu, j. h. naismith
Keywords: tryptophan 5-halogenase, antifungal protein
2wfh.pdb. splicing 06-apr-09 2wfh
Title: the human slit 2 dimerization domain d4
Author: e. seiradake, a. c. von philipsborn, m. henry, m. fritz, h. lortat-jacob, m. jamin, w. hemrika, m. bastmeyer, s. cusack, a. a. mccarthy
Keywords: heparan, heparin, secreted, guidance, d4, xds, lrr, slit, axon, neuron, phaser, sulfate
2z5p.pdb. metal binding protein 16-jul-07 2z5p Cd Pd
Title: apo-fr with low content of pd ions
Author: t. ueno, k. hirata, m. abe, m. suzuki, s. abe, n. shimizu, m. yamamoto, m. takata, y. watanabe
Keywords: light chain apoferritin, metal binding protein
2z5q.pdb. metal binding protein 16-jul-07 2z5q Cd Pd
Title: apo-fr with intermediate content of pd ion
Author: t. ueno, k. hirata, m. abe, m. suzuki, s. abe, n. shimizu, m. yamamoto, m. takata, y. watanabe
Keywords: light chain apoferritin, metal binding protein
2z5r.pdb. metal binding protein 16-jul-07 2z5r Cd Pd
Title: apo-fr with high content of pd ions
Author: t. ueno, k. hirata, m. abe, m. suzuki, s. abe, n. shimizu, m. yamamoto, m. takata, y. watanabe
Keywords: light chain apoferritin, metal binding protein
2zkt.pdb. isomerase 29-mar-08 2zkt Zn Ca
Title: structure of ph0037 protein from pyrococcus horikoshii
Author: n. k. lokanath, k. j. pampa, n. kunishima, riken structural genomics/proteomics initiative (rsgi)
Keywords: isomerase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
2zly.pdb. hydrolase 10-apr-08 2zly
Title: structure of 6-aminohexanoate-dimer hydrolase, d370y mutant
Author: t. ohki, n. shibata, y. higuchi, y. kawashima, m. takeo, d. kato, s. negoro
Keywords: hydrolase
2zm2.pdb. hydrolase 10-apr-08 2zm2
Title: structure of 6-aminohexanoate-dimer hydrolase, a61v/a124v/r187s/f264c/g291r/g338a/d370y mutant (hyb-s4m94)
Author: t. ohki, n. shibata, y. higuchi, y. kawashima, m. takeo, d. kato, s. nego
Keywords: hydrolase
2zm6.pdb. ribosome 11-apr-08 2zm6 Zn
Title: crystal structure of the thermus thermophilus 30s ribosomal subunit
Author: t. kaminishi, h. wang, m. kawazoe, r. ishii, f. schluenzen, k. hanawa- suetsugu, d. n. wilson, m. nomura, c. takemoto, m. shirouzu, p. fucini, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
2ztx.pdb. hydrolase 10-oct-08 2ztx Zn
Title: complex structure of cvb3 3c protease with epdtc
Author: c. c. lee, a. h. -j. wang
Keywords: hydrolase, protease, thiol protease
2zty.pdb. hydrolase 10-oct-08 2zty
Title: crystal structure of 3c protease from cvb3 in space group c2
Author: c. c. lee, a. h. -j. wang
Keywords: hydrolase, thiol protease
2zu0.pdb. biosynthetic protein/protein binding 11-oct-08 2zu0
Title: crystal structure of sufc-sufd complex involved in the iron- sulfur cluster biosynthesis
Author: k. wada
Keywords: abc-atpase, atp-binding, cytoplasm, nucleotide-binding, transport, biosynthetic protein/protein binding complex
2zu1.pdb. hydrolase 12-oct-08 2zu1
Title: crystal structure of cvb3 3c protease mutant c147a
Author: c. c. lee, y. c. tsui, a. h. -j. wang
Keywords: hydrolase, thiol protease
2zu2.pdb. hydrolase 12-oct-08 2zu2 Zn
Title: complex structure of cov 229e 3cl protease with epdtc
Author: c. c. lee, a. h. -j. wang
Keywords: cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting, rna- binding, thiol protease, transmembrane, zinc, zinc-finger
2zu3.pdb. hydrolase 12-oct-08 2zu3
Title: complex structure of cvb3 3c protease with tg-0204998
Author: c. c. lee, y. c. tsui, a. h. -j. wang
Keywords: hydrolase, protease, thiol protease
2zu4.pdb. hydrolase 12-oct-08 2zu4
Title: complex structure of sars-cov 3cl protease with tg-0204998
Author: m. f. hsu, c. c. lee, a. h. -j. wang
Keywords: hydrolase, protease
2zu5.pdb. hydrolase 12-oct-08 2zu5
Title: complex structure of sars-cov 3cl protease with tg-0205486
Author: m. f. hsu, c. c. lee, a. h. -j. wang
Keywords: hydrolase
2zux.pdb. lyase 28-oct-08 2zux Ca
Title: crystal structure of rhamnogalacturonan lyase yesw complexed with rhamnose
Author: a. ochiai, t. itoh, b. mikami, w. hashimoto, k. murata
Keywords: lyase, rhamnose complex
2zuy.pdb. lyase 28-oct-08 2zuy Ca
Title: crystal structure of exotype rhamnogalacturonan lyase yesx
Author: a. ochiai, t. itoh, b. mikami, w. hashimoto, k. murata
Keywords: lyase
2zvk.pdb. transferase 11-nov-08 2zvk
Title: crystal structure of pcna in complex with dna polymerase eta fragment
Author: a. hishiki, h. hashimoto, t. hanafusa, k. kamei, e. ohashi, t. shimizu, h. ohmori, m. sato
Keywords: polymorphism, schiff base, xeroderma pigmentosum
2zvl.pdb. transferase 11-nov-08 2zvl Zn
Title: crystal structure of pcna in complex with dna polymerase kappa fragment
Author: a. hishiki, h. hashimoto, t. hanafusa, k. kamei, e. ohashi, t. shimizu, h. ohmori, m. sato
Keywords: pcna, clamp, translesion synthesis, tls, dna polymerase, tls polymerase, complex, pip-box, dna polymerase kappa, transferase
2zvm.pdb. transferase 11-nov-08 2zvm
Title: crystal structure of pcna in complex with dna polymerase iota fragment
Author: a. hishiki, h. hashimoto, t. hanafusa, k. kamei, e. ohashi, t. shimizu, h. ohmori, m. sato
Keywords: pcna, clamp, translesion synthesis, tls, dna polymerase, complex, pip-box, dna polymerase iota, transferase
2zw3.pdb. cell adhesion 01-dec-08 2zw3
Title: structure of the connexin-26 gap junction channel at 3.5 angstrom resolution
Author: s. maeda, s. nakagawa, m. suga, e. yamashita, a. oshima, y. fujiyoshi, t. tsukihara
Keywords: membrane, non- syndromic deafness, palmoplantar keratoderma, polymorphism, transmembrane, cell adhesion
2zyc.pdb. hydrolase 19-jan-09 2zyc
Title: crystal structure of peptidoglycan hydrolase from sphingomonas sp. a1
Author: a. ochiai, b. mikami, w. hashimoto, k. murata
2zyt.pdb. transferase 29-jan-09 2zyt
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with paps
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, paps, sulfonation, transferase
2zyu.pdb. transferase 29-jan-09 2zyu
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with paps and p-nitrophenyl sulfate
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, paps, nitrophenylsulfate, reverse reaction
2zyv.pdb. transferase 29-jan-09 2zyv
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with paps/pap and p-nitrophenol
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, paps, p-nitrophenol, michaelis complex, sulfonation mechanism
2zyw.pdb. transferase 29-jan-09 2zyw
Title: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex with pap and p-nitrophenol, obtained by two-step soaking method
Author: t. teramoto, y. sakakibara, m. -c. liu, m. suiko, m. kimura, y. kakuta
Keywords: sult, sulfotransferase, pap, p-nitrophenol, sulfonation
3cqn.pdb. oxidoreductase 03-apr-08 3cqn
Title: crystal structure of the lipocalin domain of violaxanthin de-epoxidase (vde) at ph7
Author: p. arnoux, t. morosinotto, d. pignol
Keywords: plastid, thylakoid, transit peptide
3cqr.pdb. oxidoreductase 03-apr-08 3cqr Gd
Title: crystal structure of the lipocalin domain of violaxanthin de-epoxidase (vde) at ph5
Author: p. arnoux, t. morosinotto, d. pignol
Keywords: transit peptide
3cu1.pdb. transferase/hormone 15-apr-08 3cu1
Title: crystal structure of 2:2:2 fgfr2d2:fgf1:sos complex
Author: f. guo, r. dakshinamurthy, s. k. k. thallapuranam, j. sakon
Keywords: developmental protein, differentiation, mitogen, transferase/hormone complex
3cu9.pdb. hydrolase 16-apr-08 3cu9 Ca
Title: high resolution crystal structure of 1,5-alpha-l- arabinanase from geobacillus stearothermophilus
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, high resolution, beta- propeller, geobacillus stearothermophilus
3cuf.pdb. hydrolase 16-apr-08 3cuf
Title: cellulomonas fimi xylanase/cellulase cex (cf xyn10a) in complex with cellobiose-like isofagomine
Author: d. a. kuntz, m. saul, d. r. rose
Keywords: xylanase, isofagomine inhibitor, tim barrel, glycosidase, hydrolase
3cug.pdb. hydrolase 16-apr-08 3cug
Title: cellulomonas fimi xylanase/cellulase cex (cf xyn10a) in complex with cellotetraose-like isofagomine
Author: d. a. kuntz, m. saul, d. r. rose
Keywords: xylanase, isofagomine inhibitor, tim barrel, cellulose degradation, glycosidase, hydrolase
3cuh.pdb. hydrolase 16-apr-08 3cuh
Title: cellulomonas fimi xylanase/cellulase cex (cf xyn10a) in complex with cellotriose-like isofagomine
Author: d. a. kuntz, m. saul, d. r. rose
Keywords: xylanase, isofagomine inhibitor, tim barrel, glycosidase, hydrolase
3cui.pdb. hydrolase 16-apr-08 3cui
Title: cellulomonas fimi xylanase/cellulase cex (cf xyn10a) in complex with sulfur substituted beta-1,4 xylotetraose
Author: d. a. kuntz, m. saul, d. r. rose
Keywords: xylanase, isofagomine inhibitor, tim barrel, cellulose degradation, glycosidase, hydrolase
3cuj.pdb. hydrolase 16-apr-08 3cuj
Title: cellulomonas fimi xylanase/cellulase cex (cf xyn10a) in complex with sulfur substituted beta-1,4 xylopentaose.
Author: d. a. kuntz, m. saul, d. r. rose
Keywords: xylanase, isofagomine inhibitor, tim barrel, cellulose degradation, glycosidase, hydrolase
3cup.pdb. immune system 16-apr-08 3cup
Title: crystal structure of the mhc class ii molecule i-ag7 in complex with the peptide gad221-235
Author: a. l. corper, k. yoshida, l. teyton, i. a. wilson
Keywords: mhc class ii, i-ag7, glycoprotein, immune response, membrane, mhc ii, transmembrane, immune system
3cut.pdb. transferase 17-apr-08 3cut
Title: crystal structure of glycogen phosphorylase b in complex with n-(-d-glucopyranosyl)-n'-(2-naphthyl)oxamide
Author: c. kyritsi, e. d. chrysina, d. d. leonidas, s. e. zographos, n. g. oikonomakos
Keywords: pyridoxal phosphate, transferase
3cuu.pdb. transferase 17-apr-08 3cuu
Title: crystal structure of glycogen phosphorylase b in complex with n-(-d-glucopyranosyl)-n'-(2-naphthyl)oxamides
Author: c. kyritsi, e. d. chrysina, d. d. leonidas, s. e. zographos, n. g. oikonomakos
Keywords: pyridoxal phosphate, transferase
3cuv.pdb. transferase 17-apr-08 3cuv
Title: tracking structure activity relationships of glycogen phosphorylase inhibitors: synthesis, kinetic and crystallographic evaluation of analogues of n-(-d- glucopyranosyl)-n'-oxamides
Author: c. kyritsi, e. d. chrysina, d. d. leonidas, s. e. zographos, n. g. oikonomakos
Keywords: pyridoxal phosphate, transferase
3cuw.pdb. transferase 17-apr-08 3cuw
Title: crystal structure of glycogen phosphorylase b in complex with n-(-d-glucopyranosyl)-n'-(2-naphthyl)oxamides
Author: c. kyritsi, e. d. chrysina, d. d. leonidas, s. e. zographos, n. g. oikonomakos
Keywords: pyridoxal phosphate, transferase
3cvk.pdb. transferase 18-apr-08 3cvk
Title: crystal structure of hcv ns5b polymerase with a novel pyridazinone inhibitor
Author: q. zhao, r. e. showalter, q. han, c. r. kissinger
Keywords: rna-directed rna polymerase, nucleotide-binding, nucleotidyltransferase
3cwj.pdb. transferase, viral protein 21-apr-08 3cwj
Title: crystal structure of hcv ns5b polymerase with a novel pyridazinone inhibitor
Author: q. han, r. e. showalter, q. zhao, c. r. kissinger
Keywords: rna replication, rna-binding, rna- directed rna polymerase, hepatitis, transferase, viral protein
3czp.pdb. transferase 29-apr-08 3czp Se
Title: crystal structure of putative polyphosphate kinase 2 from pseudomonas aeruginosa pa01
Author: b. nocek, e. evdokimova, j. osipiuk, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: polyphosphate kinase, kinase, mcsg, psi-2, structural genomics, protein structure initiative, midwest center for structural genomics, transferase
3czq.pdb. transferase 29-apr-08 3czq Se
Title: crystal structure of putative polyphosphate kinase 2 from sinorhizobium meliloti
Author: j. osipiuk, e. evdokimova, b. nocek, m. kudritska, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: apc6299, polyphosphate kinase 2, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, transferase
3d1b.pdb. nuclear protein 05-may-08 3d1b
Title: tetragonal crystal structure of tas3 c-terminal alpha motif
Author: h. li, d. j. patel
Keywords: rits complex, immunoglobulin fold, cell cycle, chromosome partition, nucleus, rna-mediated gene silencing, nuclear protein
3d1d.pdb. nuclear protein 05-may-08 3d1d
Title: hexagonal crystal structure of tas3 c-terminal alpha motif
Author: h. li, d. j. patel
Keywords: rits complex immunoglobulin fold, cell cycle, chromosome partition, nucleus, rna-mediated gene silencing, nuclear protein
3d2w.pdb. dna/rna binding protein 09-may-08 3d2w
Title: crystal structure of mouse tdp-43 rrm2 domain in complex with dna
Author: p. h. kuo, h. s. yuan
Keywords: tdp-43 inclusions, rna recognition motif, ftld-u, als, rrm, dna/rna binding protein complex
3d3w.pdb. oxidoreductase 12-may-08 3d3w
Title: structure of l-xylulose reductase with bound coenzyme, phosphate and hydroxide.
Author: h. -t. zhao, o. el-kabbani
Keywords: uronate cycle, short-chain dehydrogenase/reductase(sdr) superfamily, glucose metabolism, acetylation, carbohydrate metabolism, membrane, nadp, oxidoreductase, xylose metabolism
3d5y.pdb. hydrolase 18-may-08 3d5y Ca
Title: high resolution crystal structure of 1,5-alpha-arabinanase catalytic mutant (abnbe201a)
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, high resolution, beta- propeller, geobacillus stearothermophilus
3d5z.pdb. hydrolase 18-may-08 3d5z Ca
Title: crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (abnbe201a) complexed to arabinotriose
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, beta-propeller, geobacillus stearothermophilus
3d60.pdb. hydrolase 18-may-08 3d60 Ca
Title: crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (d27a)
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, beta-propeller, geobacillus stearothermophilus
3d61.pdb. hydrolase 18-may-08 3d61 Ca
Title: crystal structure analysis of 1,5-alpha-arabinanase catalytic mutant (abnbd147a) complexed to arabinobiose
Author: a. alhassid, a. ben david, y. shoham, g. shoham
Keywords: glycosyl hydrolase, beta-propeller, geobacillus stearothermophilus
3dc8.pdb. hydrolase 03-jun-08 3dc8 Zn
Title: crystal structure of dihydropyrimidinase from sinorhizobium meliloti
Author: j. a. gavira, s. martinez-rodriguez
Keywords: hydrolase
3dd1.pdb. transferase 04-jun-08 3dd1
Title: crystal structure of glycogen phophorylase complexed with an anthranilimide based inhibitor gsk254
Author: r. t. nolte
Keywords: polymorphism, pyridoxal phosphate, transferase
3dd3.pdb. transferase 05-jun-08 3dd3 Ru
Title: crystal structure of the glutathione transferase pi enzyme in complex with the bifunctional inhibitor, etharapta
Author: l. j. parker
Keywords: glutathione, detoxification, etharapta, ruthenium, rapta-c, ethacrynic-acid
3de8.pdb. metal binding protein 08-jun-08 3de8 Cu Fe Ca
Title: crystal structure of a dimeric cytochrome cb562 assembly induced by copper coordination
Author: e. n. salgado, r. a. lewis, a. l. rheingold, f. a. tezcan
Keywords: electron transport, heme, iron, metal-binding, periplasm, transport, metal binding protein
3de9.pdb. metal binding protein 08-jun-08 3de9 Fe Ni
Title: crystal structure of a trimeric cytochrome cb562 assembly induced by nickel coordination
Author: e. n. salgado, r. a. lewis, a. l. rheingold, f. a. tezcan
Keywords: electron transport, heme, iron, metal-binding, periplasm, transport, metal binding protein
3dgq.pdb. transferase 15-jun-08 3dgq Cl Ca
Title: crystal structure of the glutathione transferase pi enzyme in complex with the bifunctional inhibitor, etharapta
Author: l. j. parker
Keywords: glutathione, detoxification, etharapta, ruthenium, ethacrynic-acid
3djh.pdb. isomerase 23-jun-08 3djh
Title: macrophage migration inhibitory factor (mif) at 1.25 a resolution
Author: g. v. crichlow, e. lolis
Keywords: cytokine, inflammatory response, isomerase, phosphoprotein
3dla.pdb. ligase 26-jun-08 3dla
Title: x-ray crystal structure of glutamine-dependent nad+ synthetase from mycobacterium tuberculosis bound to naad+ and don
Author: n. a. laronde-leblanc, m. resto, b. gerratana
Keywords: nad+ synthetase, ammonia tunneling, enzyme, glutamine-dependent nad+ synthetase, glutamine-amido transferase, atp-binding, ligase, nad, nucleotide-binding
3dlp.pdb. ligase 28-jun-08 3dlp Cl
Title: 4-chlorobenzoyl-coa ligase/synthetase, mutant d402p, bound to 4cb
Author: r. wu, j. cao, a. s. reger, x. lu, a. m. gulick, d. dunaway-mariano
3dqr.pdb. oxidoreductase 09-jul-08 3dqr Zn Fe
Title: structure of neuronal nos d597n/m336v mutant heme domain in complex with a inhibitor (+-)-n1-{cis-4'-[(6"-aminopyridin- 2"-yl)methyl]pyrrolidin-3'-yl}ethane-1,2-diamine
Author: j. igarashi, h. li, t. l. poulos
Keywords: alternative splicing, calmodulin-binding, cell projection, fad, fmn, heme, iron, membrane, metal-binding, nadp, oxidoreductase
3dqs.pdb. oxidoreductase 09-jul-08 3dqs Cl Zn Fe As
Title: structure of endothelial nos heme domain in complex with a inhibitor (+-)-n1-{cis-4'-[(6"-amino-4"-methylpyridin-2"- yl)methyl]pyrrolidin-3'-yl}-n2-(4'-chlorobenzyl)ethane-1,2- diamine
Author: j. igarashi, h. li, t. l. poulos
Keywords: phosphoprotein, zinc
3dqt.pdb. oxidoreductase 09-jul-08 3dqt Cl Zn Fe As
Title: structure of endothelial nos heme domain in complex with a inhibitor (+-)-n1-{trans-4'-[(6"-amino-4"-methylpyridin-2"- yl)methyl]pyrrolidin-3'-yl}-n2-(3'-chlorobenzyl)ethane-1,2- diamine
Author: j. igarashi, h. li, t. l. poulos
Keywords: phosphoprotein, zinc
3ee4.pdb. oxidoreductase 04-sep-08 3ee4 Mn Fe
Title: r2-like ligand binding mn/fe oxidase from m. tuberculosis
Author: c. s. andersson, t. a. jones, m. hogbom
Keywords: iron, diiron, carboxylate, oxidase, r2, ligand, cavity, monooxygenase, oxidoreductase
3eh3.pdb. oxidoreductase 11-sep-08 3eh3 Cu Fe
Title: structure of the reduced form of cytochrome ba3 oxidase from thermus thermophilus
Author: b liu, y. chen, t. doukov, s. m. soltis, d. stout, j. a. fee
Keywords: cell membrane, membrane
3eh4.pdb. oxidoreductase 11-sep-08 3eh4 Cu Fe
Title: structure of the reduced form of cytochrome ba3 oxidase from thermus thermophilus
Author: b liu, y. chen, t. doukov, s. m. soltis, d. stout, j. a. fee
Keywords: cell membrane, membrane
3eh5.pdb. oxidoreductase 11-sep-08 3eh5 Cu Fe
Title: structure of the reduced form of cytochrome ba3 oxidase from thermus thermophilus
Author: b liu, y. chen, t. doukov, s. m. soltis, d. stout, j. a. fee
Keywords: cell membrane, membrane
3elo.pdb. hydrolase 22-sep-08 3elo
Title: crystal structure of human pancreatic prophospholipase a2
Author: w. xu, l. yi, y. feng, l. chen, j. liu
Keywords: trimeric, calcium, hydrolase, lipid degradation, metal-binding, polymorphism, secreted
3f0b.pdb. oxidoreductase 24-oct-08 3f0b
Title: staphylococcus aureus dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5-phenylphenyl) but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3f0u.pdb. oxidoreductase 26-oct-08 3f0u
Title: staphylococcus aureus f98y mutant dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-5- phenylphenyl)but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3f2a.pdb. transferase 29-oct-08 3f2a Mg
Title: crystal structure of human pim-1 in complex with dappa
Author: k. qian
Keywords: serine/threonine-protein kinase, transferase
3f2e.pdb. viral protein 29-oct-08 3f2e
Title: crystal structure of yellowstone sirv coat protein c- terminus
Author: r. e. taurog, b. r. szymczyna, j. r. williamson, j. e. johnson
Keywords: virus coat protein, viral protein
3f6g.pdb. transferase 06-nov-08 3f6g Zn
Title: crystal structure of the regulatory domain of licms in complexed with isoleucine - type ii
Author: p. zhang, j. ma, g. zhao, j. ding
Keywords: allosteric regulation, feedback inhibition, selectivity, specificity, transferase, acyltransferase
3f6h.pdb. transferase 06-nov-08 3f6h Zn
Title: crystal structure of the regulatory domain of licms in complexed with isoleucine - type iii
Author: p. zhang, j. ma, g. zhao, j. ding
Keywords: allosteric regulation, feedback inhibition, selectivity, specificity, transferase, acyltransferase
3fhx.pdb. transferase 10-dec-08 3fhx Mg Na
Title: crystal structure of d235a mutant of human pyridoxal kinase
Author: m. k. safo, a. k. gandhi, f. n. musayev, m. ghatge, m. l. di salvo, v. schirch
Keywords: atp complex, metal ion, transferase, acetylation, alternative splicing, atp-binding, cytoplasm, kinase, metal-binding, nucleotide-binding, zinc
3fhy.pdb. transferase 10-dec-08 3fhy Mg Na
Title: crystal structure of d235n mutant of human pyridoxal kinase
Author: m. k. safo, a. k. gandhi, f. n. musayev, m. ghatge, m. l. di salvo, v. schirch
Keywords: atp complex, metal ion, transferase, acetylation, alternative splicing, atp-binding, cytoplasm, kinase, metal-binding, nucleotide-binding, zinc
3fhz.pdb. dna binding protein/dna 10-dec-08 3fhz
Title: crystal structure of the arginine repressor from mycobacterium tuberculosis bound with its dna operator and co-repressor, l-arginine
Author: l. t. cherney, m. m. cherney, c. r. garen, m. n. g. james, tb structural genomics consortium (tbsgc)
Keywords: amino-acid biosynthesis, arginine biosynthesis, cytoplasm, dna-binding, repressor, transcription, transcription regulation, dna binding protein/dna complex
3fi6.pdb. metal binding protein 11-dec-08 3fi6 Cd Pd
Title: apo-h49afr with high content of pd ions
Author: m. abe, t. ueno, k. hirata, m. suzuki, s. abe, n. shimizu, m. yamaoto, m. takata, y. watanabe
Keywords: light chain apoferritin, metal binding protein
3fir.pdb. protein binding 12-dec-08 3fir
Title: crystal structure of glycosylated k135e peb3
Author: tongpil min, allan matte, miroslaw cygler
Keywords: k135e, citrate, glycosylated, protein binding
3fj7.pdb. protein binding 14-dec-08 3fj7
Title: crystal structure of l-phospholactate bound peb3
Author: t. min, a. matte, m. cygler
Keywords: pep, protein binding
3fjg.pdb. transport protein 14-dec-08 3fjg
Title: crystal structure of 3pg bound peb3
Author: t. min, a. matte, m. cygler
Keywords: 3pg, transport protein
3fjm.pdb. transport protein 14-dec-08 3fjm
Title: crystal structure of phosphate bound peb3
Author: t. min, a. matte, m. cygler
Keywords: phosphate. crystal structure, transport protein
3fo8.pdb. viral protein 29-dec-08 3fo8
Title: crystal structure of the bacteriophage t4 tail sheath protein, protease resistant fragment gp18pr
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3foa.pdb. viral protein 29-dec-08 3foa
Title: crystal structure of the bacteriophage t4 tail sheath protein, deletion mutant gp18m
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3foh.pdb. viral protein 30-dec-08 3foh (electron microscopy)
Title: fitting of gp18m crystal structure into 3d cryo-em reconstruction of bacteriophage t4 extended tail
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3foi.pdb. viral protein 30-dec-08 3foi (electron microscopy)
Title: fitting of gp18m crystal structure into 3d cryo-em reconstruction of bacteriophage t4 contracted tail
Author: a. a. aksyuk, p. g. leiman, l. p. kurochkina, m. m. shneider, v. a. kostyuchenko, v. v. mesyanzhinov, m. g. rossmann
Keywords: viral structural protein, bacteriophage t4, tail sheath, viral protein
3fq0.pdb. oxidoreductase 06-jan-09 3fq0
Title: staphylococcus aureus dihydrofolate reductase complexed with nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop- 1-ynyl)-6-ethylpyrimidine (ucp120b)
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3fqc.pdb. oxidoreductase 07-jan-09 3fqc
Title: staphylococcus aureus dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3,4,5-trimethoxyphenyl) pent-1-ynyl]-6-methylpyrimidine (ucp115a)
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3fqf.pdb. oxidoreductase 07-jan-09 3fqf
Title: staphylococcus aureus f98y mutant dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3,4,5- trimethoxyphenyl)pent-1-ynyl]-6-methylpyrimidine (ucp115a)
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3fqm.pdb. metal binding protein 07-jan-09 3fqm Zn
Title: crystal structure of a novel dimeric form of hcv ns5a domain i protein
Author: r. a. love
Keywords: ns5a, domain i, phosphoprotein, rna-binding, zinc, metal binding protein
3fqo.pdb. oxidoreductase 07-jan-09 3fqo
Title: staphylococcus aureus f98y mutant dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(2,5- dimethoxyphenyl)prop-1-ynyl]-6-ethylpyrimidine (ucp120b)
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3fqq.pdb. metal binding protein 07-jan-09 3fqq Zn
Title: crystal structure of a novel dimeric form of hcv ns5a domain i protein
Author: r. a. love
Keywords: ns5a, domain i, phosphoprotein, rna-binding, zinc, metal binding protein
3fqv.pdb. oxidoreductase 07-jan-09 3fqv
Title: staphylococcus aureus f98y mutant dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-4- phenylphenyl)but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3fqz.pdb. oxidoreductase 07-jan-09 3fqz
Title: staphylococcus aureus dihydrofolate reductase complexed with nadph and 2,4-diamino-5-[3-(3-methoxy-4-phenylphenyl) but-1-ynyl]-6-methylpyrimidine
Author: a. c. anderson, k. m. frey, j. liu, m. n. lombardo
3frq.pdb. dna binding protein 08-jan-09 3frq Cl
Title: structure of the macrolide biosensor protein, mphr(a), with erythromcyin
Author: j. zheng, v. sagar, a. smolinsky, c. bourke, n. laronde-leblanc, t. a. cropp
Keywords: biosensor, erythromycin, strptomyces, natural products, biosynthesis, dna-binding, plasmid, transcription, transcription regulation, dna binding protein
3fwf.pdb. oxidoreductase 18-jan-09 3fwf K Fe Se
Title: ferric camphor bound cytochrome p450cam containing a selenocysteine as the 5th heme ligand, monoclinic crystal form
Author: i. schlichting, k. von koenig, c. aldag, d. hilvert
Keywords: hemoprotein, cytochrome p450, cytochrome, heme, iron, metal-binding, monooxygenase, oxidoreductase
3fwg.pdb. oxidoreductase 18-jan-09 3fwg K Fe
Title: ferric camphor bound cytochrome p450cam, arg365leu, glu366gln, monoclinic crystal form
Author: i. schlichting, k. von koenig, c. aldag, d. hilvert
Keywords: cytochrome p450, cytochrome, heme, iron, metal- binding, monooxygenase, oxidoreductase
3fwi.pdb. oxidoreductase 18-jan-09 3fwi K Fe Se
Title: ferric camphor bound cytochrome p450cam containing a selenocysteine as the 5th heme ligand, tetragonal crystal form
Author: i. schlichting, k. von koenig, c. aldag, d. hilvert
Keywords: cytochrome p450, selenocysteine, cytochrome, heme, iron, metal-binding, monooxygenase, oxidoreductase
3fwj.pdb. oxidoreductase 18-jan-09 3fwj K Fe Se
Title: ferric camphor bound cytochrome p450cam containing a selenocysteine as the 5th heme ligand, orthorombic crystal form
Author: i. schlichting, k. von koenig, c. aldag, d. hilvert
Keywords: cytochrome p450, selenocysteine, cytochrome, heme, iron, metal-binding, monooxygenase, oxidoreductase
3fwv.pdb. chaperone 19-jan-09 3fwv Ni
Title: crystal structure of a redesigned tpr protein, t-mod(vmy), in complex with meevf peptide
Author: m. e. jackrel, r. valverde, l. regan
Keywords: protein-peptide complex, designed protein, tpr, acetylation, cytoplasm, nucleus, phosphoprotein, tpr repeat, chaperone
3fxv.pdb. hormone receptor 21-jan-09 3fxv Cl
Title: identification of an n-oxide pyridine gw4064 analogue as a potent fxr agonist
Author: s. feng, m. yang, y. he, l. chen, z. zhang, z. wang, d. hong, h. richter, g. m. benson, k. bleicher, u. grether, r. martin, j. -m. plancher, b. kuhn, m. g. rudolph
Keywords: chromosomal rearrangement, phosphoprotein, polymorphism, proto-oncogene, transferase, ubl conjugation, hormone receptor
3fyl.pdb. transcription/dna 22-jan-09 3fyl Zn
Title: gr dna binding domain:cgt complex
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g56.pdb. dna binding protein 04-feb-09 3g56
Title: structure of the macrolide biosensor protein, mphr(a)
Author: j. zheng, v. sagar, a. smolinsky, c. bourke, n. laronde-leblanc, t. a. cropp
Keywords: repressor, biosensor, erythromycin, streptomyces, natural products, biosynthesis, dna-binding, plasmid, transcription, transcription regulation, dna binding protein
3g5f.pdb. oxidoreductase 05-feb-09 3g5f Fe
Title: crystallographic analysis of cytochrome p450 cyp121
Author: p. belin, m. h. le du, m. gondry
Keywords: tuberculosis, cyp121, p450, cytoplasm, heme, iron, metal-binding, monooxygenase, oxidoreductase
3g5h.pdb. oxidoreductase 05-feb-09 3g5h Fe
Title: crystallographic analysis of cytochrome p450 cyp121
Author: p. belin, m. h. le du, m. gondry
Keywords: cyp121, tuberculosis, cyclodipeptide, substrate, oxidoreductase
3g5k.pdb. hydrolase 05-feb-09 3g5k Co
Title: structure and activity of human mitochondrial peptide deformylase, a novel cancer target
Author: s. escobar-alvarez, y. goldgur, g. yang, o. ouerfelli, y. li, d. a. scheinberg
Keywords: actinonin, hydrolase, iron, metal- binding, mitochondrion, protein biosynthesis, transit peptide
3g5p.pdb. hydrolase 05-feb-09 3g5p Co
Title: structure and activity of human mitochondrial peptide deformylase, a novel cancer target
Author: s. escobar-alvarez, y. goldgur, g. yang, o. ouerfelli, y. li, d. a. scheinberg
Keywords: human, mitochondria, hydrolase, iron, metal-binding, mitochondrion, protein biosynthesis, transit peptide
3g5u.pdb. membrane protein 05-feb-09 3g5u Hg
Title: structure of p-glycoprotein reveals a molecular basis for poly-specific drug binding
Author: s. g. aller, j. yu, a. ward, y. weng, s. chittaboina, r. zhuo, p. m. harrell, y. t. trinh, q. zhang, i. l. urbatsch, g. chang
Keywords: multidrug resistance, pgp, cyclic peptide, membrane protein
3g60.pdb. membrane protein 05-feb-09 3g60 Se
Title: structure of p-glycoprotein reveals a molecular basis for poly-specific drug binding
Author: s. g. aller, j. yu, a. ward, y. weng, s. chittaboina, r. zhuo, p. m. harrell, y. t. trinh, q. zhang, i. l. urbatsch, g. chang
Keywords: pgp, multidrug resistance, membrane protein, cyclic peptide
3g61.pdb. membrane protein 05-feb-09 3g61 Se
Title: structure of p-glycoprotein reveals a molecular basis for poly-specific drug binding
Author: s. g. aller, j. yu, a. ward, y. weng, s. chittaboina, r. zhuo, p. m. harrell, y. t. trinh, q. zhang, i. l. urbatsch, g. chang
Keywords: pgp, multidrug resistance, membrane protein, cycle peptides, atp-binding, nucleotide-binding
3g6p.pdb. transcription/dna 07-feb-09 3g6p Zn
Title: gr dna binding domain:fkbp5 complex, 18bp
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g6q.pdb. transcription/dna 08-feb-09 3g6q Zn
Title: gr dna binding domain:fkbp5 binding site complex-9
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g6r.pdb. transcription/dna 08-feb-09 3g6r Zn
Title: gr dna binding domain:fkbp5 complex-52, 18bp
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g6t.pdb. transcription/dna 08-feb-09 3g6t Zn
Title: gr gamma dna-binding domain:fkbp5 16bp complex-34
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g6u.pdb. transcription/dna 08-feb-09 3g6u Zn
Title: gr dna-binding domain:fkbp5 16bp complex-49
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g7l.pdb. nuclear protein 10-feb-09 3g7l He Hg Zn
Title: chromodomain of chp1 in complex with histone h3k9me3 peptide
Author: t. schalch, l. joshua-tor
Keywords: nucleosome core, phosphoprotein, nuclear protein
3g7t.pdb. viral protein 10-feb-09 3g7t Cl
Title: crystal structure of dengue virus type 1 envelope protein in the postfusion conformation
Author: y. modis
Keywords: envelope protein, membrane anchor, fusion loop, igc domain, beta sandwich, glycoprotein, membrane, transmembrane, virion, viral protein
3g8u.pdb. transcription/dna 12-feb-09 3g8u Zn
Title: dna binding domain:gilz 16bp complex-5
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g8x.pdb. transcription/dna 12-feb-09 3g8x Zn
Title: gr dna binding domain:gilz 16bp complex-65
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g97.pdb. transcription/dna 13-feb-09 3g97 Zn
Title: gr dna-binding domain:gilz 16bp complex-9
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g99.pdb. transcription/dna 13-feb-09 3g99 Zn Br
Title: gr dna binding domain:pal complex-9
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g9i.pdb. transcription/dna 13-feb-09 3g9i Zn
Title: gr dna binding domain: pal complex-35
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g9j.pdb. transcription/dna 13-feb-09 3g9j Zn
Title: gr dna binding domain:pal, 18bp complex-36
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g9m.pdb. transcription/dna 13-feb-09 3g9m Zn
Title: gr dna-binding domain:sgk 16bp complex-44
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g9o.pdb. transcription/dna 13-feb-09 3g9o Zn
Title: gr dna-binding domain:sgk 16bp complex-9
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: steroid-binding, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3g9p.pdb. transcription/dna 13-feb-09 3g9p Zn
Title: gr dna binding domain:sgk 16bp complex-7
Author: m. a. pufall, k. r. yamamoto, s. h. meijsing
Keywords: transcription, transcription regulation, ubl conjugation, zinc, zinc- finger, transcription/dna complex
3ga0.pdb. oxidoreductase 16-feb-09 3ga0
Title: ctbp1/bars gly172->glu mutant structure: impairing nad(h) binding and dimerization
Author: m. nardini, c. valente, s. ricagno, a. luini, d. corda, m. bolognesi
Keywords: acyltransferase, brefeldin a, nad, golgi membrane, acyl-coa, adp-ribosylation, cytoplasm, nucleus, oxidoreductase, phosphoprotein, ubl conjugation
3gbn.pdb. viral protein/immune system 20-feb-09 3gbn Cl
Title: crystal structure of fab cr6261 in complex with the 1918 h1n1 influenza virus hemagglutinin
Author: d. c. ekiert, m. a. elsliger, i. a. wilson
Keywords: viral protein/immune system complex
3ge1.pdb. transferase 24-feb-09 3ge1 Cl Se
Title: 2.7 angstrom crystal structure of glycerol kinase (glpk) from staphylococcus aureus in complex with adp and glycerol
Author: g. minasov, j. brunzelle, t. skarina, o. onopriyenko, p. scott, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid), center for structural genomics of infectious diseases (csgid)
Keywords: glycerol, adp, idp00743, atp-binding, glycerol metabolism, kinase, nucleotide-binding, transferase, structural genomics, center for structural genomics of infectious diseases, csgid
3gin.pdb. metal binding protein 05-mar-09 3gin Ca
Title: crystal structure of e454k-cbd1
Author: v. chaptal, g. mercado-besserer, j. abramson
Keywords: transmembrane, transport, metal transport, metal binding protein
3gnl.pdb. structural genomics, unknown function 17-mar-09 3gnl Se
Title: structure of uncharacterized protein (lmof2365_1472) from listeria monocytogenes serotype 4b
Author: u. a. ramagopal, r. toro, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: uncharacterized protein, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, unknown function
3gou.pdb. oxygen transport 20-mar-09 3gou Fe
Title: crystal structure of dog (canis familiaris) hemoglobin
Author: s. s. sundaresan, p. ramesh, m. thenmozhi, m. n. ponnuswamy
Keywords: oxygen transport, tetramer, iron, metal-binding, polymorphism, transport
3gp4.pdb. transcription regulator 20-mar-09 3gp4 Na
Title: crystal structure of putative merr family transcriptional regulator from listeria monocytogenes
Author: u. a. ramagopal, r. toro, c. morano, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: merr, transcriptional regulator, dna- binding, transcription regulator, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
3gpi.pdb. structural genomics, unknown function 23-mar-09 3gpi
Title: structure of putative nad-dependent epimerase/dehydratase from methylobacillus flagellatus
Author: u. a. ramagopal, c. morano, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: epimerase, dehydratase, unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
3gqu.pdb. rna binding protein 24-mar-09 3gqu I
Title: pyrococcus horikoshii nop5 rna binding domain
Author: f. e. reyes, j. w. hardin, r. t. batey
Keywords: rna binding protein
3gqx.pdb. rna binding protein 24-mar-09 3gqx I
Title: pyrococcus horikoshii nop5 rna binding domain from a twinned crystal form
Author: f. e. reyes, j. w. hardin, r. t. batey
Keywords: rna binding protein
3gs5.pdb. rna 26-mar-09 3gs5 Co
Title: an all-rna hairpin ribozyme a38n1da variant with a product mimic substrate strand
Author: r. c. spitale, r. volpini, m. g. heller, j. krucinska, g. cristalli, j. e. wedekind
Keywords: rna ribozyme, n1-deazaadenosine
3gs8.pdb. rna 26-mar-09 3gs8 Co
Title: an all-rna hairpin ribozyme a38n1da38 variant with a transition-state mimic substrate strand
Author: r. c. spitale, r. volpini, m. g. heller, j. krucinska, g. cristalli, j. e. wedekind
Keywords: rna ribozyme, n1-deazaadenosine
3gt0.pdb. oxidoreductase 27-mar-09 3gt0 Se
Title: crystal structure of pyrroline 5-carboxylate reductase from bacillus cereus. northeast structural genomics consortium target bcr38b
Author: a. p. kuzin, m. abashidze, j. seetharaman, r. shastry, y. fang, k. cunningham, l-c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, bcr38b, oxidoreductase
3gv6.pdb. transcription/dna binding protein 30-mar-09 3gv6
Title: crystal structure of human chromobox homolog 6 (cbx6) with h3k9 peptide
Author: a. dong, m. f. amaya, z. li, p. loppnau, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. bochkarev, j. min, h. ouyang, structural genomics consortium (sgc)
Keywords: transcription/dna binding protein complex, structural genomics, structural genomics consortium
3gvu.pdb. transferase 31-mar-09 3gvu
Title: the crystal structure of human abl2 in complex with gleevec
Author: e. ugochukwu, e. salah, a. barr, p. mahajan, b. shrestha, p. savitsky, a. chaikuad, p. filippakopoulos, a. roos, a. c. w. pike, f. von delft, c. bountra, c. h. arrowsmith, j. weigelt, a. edwards, s. knapp, structural genomics consortium (sgc)
Keywords: nucleotide-binding, phosphoprotein, polymorphism, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase, structural genomics, structural genomics consortium, sgc
3gw2.pdb. transcription regulator 31-mar-09 3gw2 Se
Title: crystal structure of possible transcriptional regulatory protein (fragment 1-100) from mycobacterium bovis. northeast structural genomics consortium target mbr242e.
Author: a. p. kuzin, m. su, j. seetharaman, m. mao, r. xiao, c. ciccosanti, d. wang, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: transcription regulator
3gw4.pdb. structural genomics, unknown function 31-mar-09 3gw4 Se
Title: crystal structure of uncharacterized protein from deinococcus radiodurans. northeast structural genomics consortium target drr162b.
Author: a. p. kuzin, m. abashidze, j. seetharaman, s. sahdev, r. xiao, e. l. foote, c. ciccosanti, h. wang, j. k. everett, r. nair, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, drr162b, unknown function
3gx1.pdb. structural genomics, unknown function 01-apr-09 3gx1 Se
Title: crystal structure of a domain of lin1832 from listeria innocua
Author: k. tan, e. rakowski, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: lin1832, listeria innocua, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, atp-binding, nucleotide-binding, unknown function
3gxh.pdb. hydrolase 02-apr-09 3gxh Cl Se
Title: crystal structure of putative phosphatase (duf442) (yp_001181608.1) from shewanella putrefaciens cn-32 at 1.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative phosphatase (duf442), structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, tyrosine phosphatase, hydrolase
3gxj.pdb. transferase 02-apr-09 3gxj
Title: structure of alk5 + gw855857
Author: w. smith, c. janson
Keywords: phosphoprotein, polymorphism, receptor, serine/threonine-protein kinase, transferase, transmembrane
3gxl.pdb. transferase 02-apr-09 3gxl
Title: alk-5 kinase complex with gw857175
Author: w. smith, c. janson
Keywords: phosphoprotein, polymorphism, receptor, serine/threonine-protein kinase, transferase, transmembrane
3gxs.pdb. ligase 02-apr-09 3gxs Se
Title: crystal structure of a domain of phenylacetate-coenzyme a ligase from bacteroides vulgatus atcc 8482
Author: k. tan, r. wu, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: phenylacetate-coenzyme a ligase, bacteroides vulgatus atcc 8482, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, ligase
3gy9.pdb. transferase 03-apr-09 3gy9 Se
Title: crystal structure of putative acetyltransferase (yp_001815201.1) from exiguobacterium sp. 255-15 at 1.52 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative acetyltransferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, transferase, unknown function
3gya.pdb. transferase 03-apr-09 3gya Se
Title: crystal structure of putative acetyltransferase (yp_001815201.1) from exiguobacterium sp. 255-15 at 1.62 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative acetyltransferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, transferase, unknown function
3gyc.pdb. hydrolase 03-apr-09 3gyc Se
Title: crystal structure of putative glycoside hydrolase (yp_001304622.1) from parabacteroides distasonis atcc 8503 at 1.85 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative glycoside hydrolase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2
3gyd.pdb. nucleotide binding protein 03-apr-09 3gyd Se
Title: crystal structure of cyclic nucleotide-binding domain (yp_546034.1) from methylobacillus flagellatus kt at 1.79 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: cyclic nucleotide-binding domain, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, nucleotide binding protein
3gyl.pdb. hydrolase 03-apr-09 3gyl Ca
Title: structure of prostasin at 1.3 angstroms resolution in complex with a calcium ion.
Author: g. spraggon, m. hornsby, a. shipway, j. l. harris, s. a. lesley
Keywords: enac, zymogen, divalent cation, channel activating, cell membrane, disulfide bond, glycoprotein, hydrolase, membrane, protease, secreted, serine protease, transmembrane
3gz7.pdb. biosynthetic protein 06-apr-09 3gz7 Se
Title: crystal structure of putative antibiotic biosynthesis monooxygenase (np_888398.1) from bordetella bronchiseptica at 2.15 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: antibiotic biosynthesis monooxygenase; dimeric alpha-beta barrel, biosynthetic protein
3gza.pdb. hydrolase 06-apr-09 3gza Na Se
Title: crystal structure of putative alpha-l-fucosidase (np_812709.1) from bacteriodes thetaiotaomicron vpi-5482 at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative alpha-l-fucosidase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, hydrolase
3gzb.pdb. lyase 06-apr-09 3gzb Se
Title: crystal structure of putative snoal-like polyketide cyclase (yp_001182657.1) from shewanella putrefaciens cn-32 at 1.44 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative snoal-like polyketide cyclase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, lyase
3gzi.pdb. transcription regulator 07-apr-09 3gzi Se
Title: crystal structure of tetr family transcriptional regulator (yp_001095692.1) from shewanella sp. pv-4 at 2.05 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: transcription regulator
3gzl.pdb. biosynthetic protein 07-apr-09 3gzl
Title: crystal structure of holo pfacp disulfide-linked dimer
Author: j. r. gallagher, s. t. prigge
Keywords: helix bundle, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, transit peptide, biosynthetic protein
3gzm.pdb. biosynthetic protein 07-apr-09 3gzm
Title: crystal structure of holo pfacp reduced monomer
Author: j. r. gallagher, s. t. prigge
Keywords: phosphopantetheine, fatty acid biosynthesis, lipid synthesis, transit peptide, biosynthetic protein
3gzr.pdb. structural genomics, unknown function 07-apr-09 3gzr Se
Title: crystal structure of domain of unknown function with a ntf2- like fold (np_421374.1) from caulobacter crescentus at 1.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: domain of unknown function with a ntf2-like fold, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
3gzs.pdb. sugar binding protein 07-apr-09 3gzs Se
Title: crystal structure of susd superfamily protein (yp_213019.1) from bacteroides fragilis nctc 9343 at 2.10 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: susd superfamily protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, sugar binding protein
3h02.pdb. lyase 08-apr-09 3h02 Se
Title: 2.15 angstrom resolution crystal structure of naphthoate synthase from salmonella typhimurium.
Author: g. minasov, z. wawrzak, t. skarina, o. onopriyenko, p. scott, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid), center for structural genomics of infectious diseases (csgid)
Keywords: idp00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid
3h05.pdb. structural genomics, unknown function 08-apr-09 3h05 Cl
Title: crystal structure of a conserved hypothetical protein in the nucleotidylyl transferase superfamily
Author: a. j. stein, a. sather, g. shackelford, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transferase, mcsg, midwest center for structural genomics, psi, protein structure initiative, structural genomics, unknown function
3h09.pdb. hydrolase 08-apr-09 3h09 Na
Title: the structure of haemophilus influenzae iga1 protease
Author: t. a. johnson, j qiu, a. g. plaut, t. holyoak
Keywords: immunoglobulin a1, beta helix, hydrolase, membrane, protease, secreted, transmembrane, virulence, zymogen
3h0k.pdb. structural genomics, unknown function 09-apr-09 3h0k
Title: crystal structure of an adenylated kinase related protein from sulfolobus solfataricus to 3.25a
Author: a. j. stein, a. sather, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: kinase, sulfolobus, solfataricus, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, atp-binding, nucleotide-binding, unknown function
3h0n.pdb. structural genomics, unknown function 09-apr-09 3h0n Zn Na Ni Se
Title: crystal structure of protein of unknown function duf1470 (yp_510353.1) from jannaschia sp. ccs1 at 1.45 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: protein of unknown function duf1470, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, protein of unknown function (duf1470), unknown function
3h0p.pdb. transferase 10-apr-09 3h0p Se
Title: 2.0 angstrom crystal structure of an acyl carrier protein s- malonyltransferase from salmonella typhimurium.
Author: g. minasov, z. wawrzak, t. skarina, o. onopriyenko, p. scott, a. savchenko, w. f. anderson, center for structural genomics of infectious diseases (csgid), center for structural genomics of infectious diseases (csgid)
Keywords: s-malonyltransferase, idp00956, fabd, fatty acid biosynthesis, lipid synthesis, transferase, structural genomics, center for structural genomics of infectious diseases, csgid
3h0u.pdb. lyase 10-apr-09 3h0u Na
Title: crystal structure of a putative enoyl-coa hydratase from streptomyces avermitilis
Author: j. b. bonanno, j. freeman, k. t. bain, s. miller, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: isomerase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc, lyase
3h0x.pdb. chaperone 10-apr-09 3h0x
Title: crystal structure of peptide-binding domain of kar2 protein from saccharomyces cerevisiae
Author: j. osipiuk, l. bigelow, m. gu, c. sahi, e. a. craig, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: phosphoprotein, stress response
3h12.pdb. isomerase 10-apr-09 3h12 Na
Title: crystal structure of putative mandelate racemase from bordetella bronchiseptica rb50
Author: v. n. malashkevich, r. toro, c. morano, m. j. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, isomerase

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