Recent PDB releases or updates: week of 6 February 2009
- 1j6y.pdb.
isomerase 15-may-01 1j6y
He Hg
(NMR, 20 structures)
Title: solution structure of pin1at from arabidopsis thaliana
Author: i. landrieu, j. m. wieruszeski, r. wintjens, d. inze, g. lippens
Keywords: parvulin, pin1, phosphorylation
- 2a3k.pdb.
signaling protein 24-jun-05 2a3k
Title: crystal structure of the human protein tyrosine phosphatase, ptpn7 (heptp, hematopoietic protein tyrosine phosphatase)
Author: a. barr, a. p. turnbull, s. das, j. eswaran, j. e. debreczeni, e. longmann, c. smee, n. burgess, o. gileadi, m. sundstrom, c. arrowsmith, a. edwards, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: structural genomics, structural genomics consortium, sgc
- 2a8b.pdb.
hydrolase 07-jul-05 2a8b
Cl
Title: crystal structure of the catalytic domain of human tyrosine phosphatase receptor, type r
Author: e. ugochukwu, j. eswaran, a. barr, e. longman, c. arrowsmith, a. edwards, m. sundstrom, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: receptor, human, structural genomics, structural genomics consortium, sgc, hydrolase
- 2cfv.pdb.
hydrolase 23-feb-06 2cfv
Cl Ni
Title: crystal structure of human protein tyrosine phosphatase receptor type j
Author: j. e. debreczeni, a. barr, j. eswaran, e. ugochukwu, m. sundstrom, j. weigelt, c. arrowsmith, a. edwards, s. knapp
Keywords: receptor type tyrosine phosphatase j, ptprj, glycoprotein, protein phosphatase
- 2cjz.pdb.
hydrolase 10-apr-06 2cjz
Title: crystal structure of the c472s mutant of human protein tyrosine phosphatase ptpn5 (step, striatum enriched phosphatase) in complex with phosphotyrosine
Author: j. e. debreczeni, a. barr, j. eswaran, c. smee, n. burgess, o. gileadi, p. savitsky, m. sundstrom, c. arrowsmith, a. edwards, j. weigelt, s. knapp, f. von delft
Keywords: step, ptpn5, hydrolase, phosphatase
- 2dq0.pdb.
ligase 18-may-06 2dq0
Title: crystal structure of ph0710 with ssa
Author: y. itoh, s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: homodimer, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2hwq.pdb.
ligand binding protein 01-aug-06 2hwq
Title: structural basis for the structure-activity relationships of peroxisome proliferator-activated receptor agonists
Author: y. h. peng, i. l. lu, n. mahindroo, c. h. lin, h. p. hsieh, s. y. wu
Keywords: ligand binding protein
- 2hwr.pdb.
ligand binding protein 01-aug-06 2hwr
Title: structural basis for the structure-activity relationships of peroxisome proliferator-activated receptor agonists
Author: y. h. peng, i. l. lu, n. mahindroo, c. h. lin, h. p. hsieh, s. y. wu
Keywords: ligand binding protein
- 2i75.pdb.
hydrolase 30-aug-06 2i75
Title: crystal structure of human protein tyrosine phosphatase n4 (ptpn4)
Author: e. ugochukwu, a. barr, p. savitsky, n. burgess, s. das, a. turnbull, f. von delft, m. sundstrom, a. edwards, c. arrowsmith, j. weigelt, s. knapp, structural genomics consortium (sgc)
Keywords: ptp, tyrosine phosphatase, meg-1, structural genomics, structural genomics consortium, sgc
- 2jjd.pdb.
hydrolase 31-mar-08 2jjd
Cl
Title: protein tyrosine phosphatase, receptor type, e isoform
Author: j. m. elkins, e. ugochukwu, i. alfano, a. barr, g. bunkoczi, o. king, p. filippakopoulos, p. savitsky, e. salah, a. pike, c. johansson, s. das, n. burgess-brown, o. gileadi, f. vondelft, c. h. arrowsmith, c. bountra, a. m. edwards, s. knapp
Keywords: phosphoprotein, protein phosphatase, alternative splicing, consortium, structural, phosphatase, glycoprotein, sgc, ptpre, membrane, genomics, hydrolase, cytoplasm
- 2jks.pdb.
immune system 29-aug-08 2jks
Zn
Title: crystal structure of the the bradyzoite specific antigen bsr4 from toxoplasma gondii.
Author: m. j. boulanger, m. e. grigg, e. bruic, o. grujic
Keywords: toxoplasma gondii, bradyzoite specific antigen, immune system
- 2jlh.pdb.
protein transport 09-sep-08 2jlh
Title: crystal structure of the cytoplasmic domain of yersinia pestis yscu n263a mutant
Author: g. t. lountos, b. p. austin, s. nallamsetty, d. s. waugh
Keywords: transmembrane, yersinia pestis, molecular switch, protein transport, atomic resolution, plasmid, membrane, virulence, transport, type iii secretion system
- 2jli.pdb.
protein transport 09-sep-08 2jli
Hg
Title: atomic resolution structure of the cytoplasmic domain of yersinia pestis yscu, a regulatory switch involved in type iii secretion
Author: g. t. lountos, b. p. austin, s. nallamsetty, d. s. waugh
Keywords: transmembrane, yersinia pestis, protein transport, type iii secretion system, plasmid, membrane, virulence, transport
- 2jlj.pdb.
protein transport 09-sep-08 2jlj
Title: crystal structure of the cytoplasmic domain of yersinia pestis yscu n263a p264a mutant
Author: g. t. lountos, b. p. austin, s. nallamsetty, d. s. waugh
Keywords: transmembrane, yersinia pesits, protein transport, type iii secretion system, plasmid, membrane, virulence, transport
- 2k06.pdb.
transcription 25-jan-08 2k06
He Hg
(solution NMR)
Title: solution structure of the aminoterminal domain of e. coli nusg
Author: k. schweimer, u. scheckenhofer, p. roesch
Keywords: transcription, transcription antitermination, transcription regulation, transcription termination
- 2k0t.pdb.
dna 14-feb-08 2k0t
Ho Pt
(solution NMR)
Title: high resolution solution nmr structures of oxaliplatin-dna adduct
Author: d. bhattacharyya, c. l. king, s. g. chaney, s. l. campbell
- 2k0u.pdb.
dna 15-feb-08 2k0u
Ho Pt
(solution NMR)
Title: high resolution solution nmr structures of oxaliplatin-dna adduct
Author: d. bhattacharyya, c. l. king, s. g. chaney, s. l. campbell
- 2k0v.pdb.
dna 15-feb-08 2k0v
Ho
(solution NMR)
Title: high resolution solution nmr structures of undamaged dna dodecamer duplex
Author: d. bhattacharyya, c. l. king, s. g. chaney, s. l. campbell
- 2k0w.pdb.
dna 15-feb-08 2k0w
Ho
(solution NMR)
Title: high resolution average solution nmr structure of undamaged dna dodecamer duplex
Author: d. bhattacharyya, c. l. king, s. g. chaney, s. l. campbell
- 2k1q.pdb.
viral protein 13-mar-08 2k1q
He Cl Hg F Zn
(solution NMR)
Title: nmr structure of hepatitis c virus ns3 serine protease complexed with the non-covalently bound phenethylamide inhibitor
Author: t. eliseo, m. gallo, m. pennestri, r. bazzo, d. o. cicero
Keywords: ns3, hepatitis c virus, non covalent inhibitor, envelope protein, helicase, hydrolase, nucleotide-binding, rna replication, transmembrane, viral protein
- 2k1y.pdb.
dna 18-mar-08 2k1y
Ho
(solution NMR)
Title: solution structure of duplex dna containing the mutagenic lesion: 1,n2-etheno-2'-deoxyguanine
Author: t. zaliznyak, m. lukin, f. johnson, c. de los santos
Keywords: exocyclic dna lesions, extrahelical base, ber recognition
- 2k32.pdb.
membrane protein, transport protein 17-apr-08 2k32
He Hg
(solution NMR)
Title: truncated acra from campylobacter jejuni for glycosylation studies
Author: v. slynko, m. schubert, s. numao, m. kowarik, m. aebi, f. allain
Keywords: membrane protein, transport protein
- 2k33.pdb.
membrane protein, transport protein 18-apr-08 2k33
He Hg
(solution NMR)
Title: solution structure of an n-glycosylated protein using in vitro glycosylation
Author: v. slynko, m. schubert, s. numao, m. kowarik, m. aebi, f. h. -t. allain
Keywords: n-glycan, glycosylation, membrane protein, transport protein
- 2k36.pdb.
viral protein 22-apr-08 2k36
He Hg
(solution NMR)
Title: structure ensemble backbone and side-chain 1h, 13c, and 15n chemical shift assignments, 1h-15n rdcs and 1h-1h noe restraints for protein k7 from the vaccinia virus
Author: a. p. kalverda, g. s. thompson, a. vogel, m. schr der, a. g. bowie, a. r. khan, s. w. homans
Keywords: viral protein
- 2k9k.pdb.
metal transport 15-oct-08 2k9k
He Hg
(solution NMR)
Title: molecular characterization of the tonb2 protein from vibrio anguillarum
Author: c. s. lopez, r. s. peacock, j. h. crosa, h. j. vogel
Keywords: metal transport
- 2kad.pdb.
membrane protein 04-nov-08 2kad
Hg
(solid-state NMR)
Title: magic-angle-spinning solid-state nmr structure of influenza a m2 transmembrane domain
Author: m. hong, s. d. cady, t. v. mishanina
Keywords: transport, virion, membrane protein
- 2kbo.pdb.
hydrolase 04-dec-08 2kbo
He Hg Zn
(solution NMR)
Title: structure, interaction, and real-time monitoring of the enzymatic reaction of wild type apobec3g
Author: a. furukawa, t. nagata, a. matsugami, y. habu, r. sugiyama, f. hayashi, n. kobayashi, s. yokoyama, h. takaku, m. katahira
Keywords: hiv, apobec3g, alternative splicing, antiviral defense, cytoplasm, host-virus interaction, hydrolase, metal-binding, nucleus, polymorphism, ubl conjugation, zinc
- 2kbt.pdb.
signaling protein 07-dec-08 2kbt
He Hg
(solution NMR)
Title: attachment of an nmr-invisible solubility enhancement tag (inset) using a sortase-mediated protein ligation method
Author: h. kumeta, y. kobashigawa, k. ogura, f. inagaki
Keywords: protein ligation, gb1, intein, inset, solubility enhancement, signaling protein
- 2kd7.pdb.
cell adhesion 04-jan-09 2kd7
He Hg
(solution NMR)
Title: solution nmr structure of f5/8 type c-terminal domain of a putative chitobiase from bacteroides thetaiotaomicron. northeast structural genomics consortium target btr324b
Author: a. eletsky, j. l. mills, h. lee, d. lee, m. jiang, c. ciccosanti, r. xiao, r. nair, j. k. everett, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, j. h. prestegard, t. szyperski, northeast structural genomics consortium (nesg)
Keywords: beta-sandwich, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, cell adhesion
- 2nlk.pdb.
hydrolase 20-oct-06 2nlk
Title: crystal structure of d1 and d2 catalytic domains of human protein tyrosine phosphatase gamma (d1+d2 ptprg)
Author: p. filippakopoulos, o. gileadi, c. johansson, e. ugochukwu, a. edwards, c. arrowsmith, m. sundstrom, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: r-ptp gamma, protein tyrosine phosphatase gamma, d3s1249, hptpg, rptpg, ptpg, d1-d2 catalytic domains, structural genomics, structural genomics consortium, sgc
- 2nz6.pdb.
hydrolase 22-nov-06 2nz6
Cl Ni
Title: crystal structure of the ptprj inactivating mutant c1239s
Author: e. ugochukwu, a. barr, p. savitsky, a. c. w. pike, g. bunkoczi, m. sundstrom, j. weigelt, c. h. arrowsmith, a. edwards, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: ptprj, glycoprotein, protein phosphatase , structural genomics, structural genomics consortium, sgc
- 2oc3.pdb.
hydrolase 20-dec-06 2oc3
Title: crystal structure of the catalytic domain of human protein tyrosine phosphatase non-receptor type 18
Author: e. ugochukwu, a. barr, i. alfano, f. gorrec, c. umeano, p. savitsky, f. sobott, j. eswaran, e. papagrigoriou, j. e. debreczeni, a. turnbull, g. bunkoczi, m. sundstrom, c. h. arrowsmith, j. weigelt, a. edwards, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: receptor, human, structural genomics, structural genomics consortium, sgc
- 2ojp.pdb.
lyase 13-jan-07 2ojp
Title: the crystal structure of a dimeric mutant of dihydrodipicolinate synthase from e.coli- dhdps-l197y
Author: m. d. w. griffin, r. c. j. dobson, l. antonio, m. a. perugini, g. b. jameson, j. a. gerrard
Keywords: dhdps, dimer, lysine biosynthesis, lyase
- 2ooq.pdb.
hydrolase 26-jan-07 2ooq
Na
Title: crystal structure of the human receptor phosphatase ptprt
Author: e. ugochukwu, i. alfano, a. barr, t. keates, j. eswaran, e. salah, p. savitsky, g. bunkoczi, a. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: receptor, human, structural genomics, structural genomics consortium, sgc
- 2p6x.pdb.
hydrolase 19-mar-07 2p6x
Cl
Title: crystal structure of human tyrosine phosphatase ptpn22
Author: e. ugochukwu, e. salah, a. barr, l. shrestha, i. alfano, n. burgess- brown, o. king, c. umeano, e. papagrigoriou, a. c. w. pike, g. bunkoczi, a. turnbull, j. uppenberg, m. sundstrom, c. h. arrowsmith, j. weigelt, a. edwards, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: lymphoid phosphatase, pep, lyp, structural genomics, structural genomics consortium, sgc
- 2pa5.pdb.
hydrolase 27-mar-07 2pa5
Cl
Title: crystal structure of human protein tyrosine phosphatase ptpn9
Author: e. ugochukwu, a. barr, a. c. w. pike, p. savitsky, e. papagrigoriou, a. turnbull, j. uppenberg, g. bunkoczi, e. salah, s. das, f. von delft, m. sundstrom, c. h. arrowsmith, j. weigelt, a. edwards, s. knapp, structural genomics consortium (sgc)
Keywords: meg2, ptpn9, structural genomics, structural genomics, structural genomics consortium, sgc
- 2ppp.pdb.
lyase 30-apr-07 2ppp
Title: crystal structure of e60q mutant of fkbp12
Author: s. szep, s. park, g. d. vanduyne, j. f. saven
Keywords: lyase
- 2qep.pdb.
hydrolase 26-jun-07 2qep
Cl
Title: crystal structure of the d1 domain of ptprn2 (ia2beta)
Author: e. ugochukwu, a. barr, i. alfano, g. berridge, n. burgess-brown, s. das, o. fedorov, o. king, f. niesen, s. watt, p. savitsky, e. salah, a. c. w. pike, g. bunkoczi, f. von delft, m. sundstrom, a. edwards, c. h. arrowsmith, j. weigelt, s. knapp, structural genomics consortium (sgc)
Keywords: ptprp, phogrin, ia-2 beta, autoantigen, structural genomics, structural genomics, structural genomics consortium, sgc
- 2v04.pdb.
lipid-binding-protein 08-may-07 2v04
Title: crystal structure of choline binding protein f from streptococcus pneumoniae
Author: j. hermoso, r. molina, r. kahn, m. stelter
Keywords: choline-binding-protein, lipid-binding-protein
- 2v58.pdb.
ligase 02-oct-08 2v58
Cl Br
Title: crystal structure of biotin carboxylase from e.coli in complex with potent inhibitor 1
Author: i. mochalkin, j. r. miller
Keywords: biotin carboxylase, nucleotide-binding, atp-binding, antibacterial, lipid synthesis, fas, ligase, biotin, bacterial, inhibitor
- 2v59.pdb.
ligase 02-oct-08 2v59
Title: crystal structure of biotin carboxylase from e.coli in complex with potent inhibitor 2
Author: i. mochalkin, j. r. miller
Keywords: biotin carboxylase, nucleotide-binding, atp-binding, antibacterial, lipid synthesis, fas, ligase, biotin, bacterial, inhibitor
- 2v5a.pdb.
ligase 02-oct-08 2v5a
Cl
Title: crystal structure of biotin carboxylase from e.coli in complex with potent inhibitor 3
Author: i. mochalkin, j. r. miller
Keywords: biotin carboxylase, nucleotide-binding, atp-binding, antibacterial, lipid synthesis, fas, ligase, biotin, bacterial, inhibitor
- 2v5b.pdb.
isomerase 02-oct-08 2v5b
Title: the monomerization of triosephosphate isomerase from trypanosoma cruzi
Author: r. arreola, a. torres-larios
Keywords: unfolding, monotctim, isomerase, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt, monomerization, fatty acid biosynthesis, triosephosphate isomerase
- 2vh6.pdb.
hydrolase 19-nov-07 2vh6
Cl F
Title: structure and property based design of factor xa inhibitors: pyrrolidin-2-ones with biaryl p4 motifs
Author: r. j. young, a. d. borthwick, d. brown, c. l. burns-kurtis, m. campbell, c. chan, m. charbaut, c. w. chung, m. a. convery, h. a. kelly, n. p. king, s. kleanthous, a. m. mason, a. j. pateman, a. n. patikis, i. l. pinto, d. r. pollard, s. senger, g. p. shah, j. r. toomey, n. s. watson, h. e. weston
Keywords: egf-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation, gamma-carboxyglutamic acid, calcium, zymogen, complex, protease, hydrolase, cleavage on pair of basic residues
- 2vwg.pdb.
oxidoreductase 24-jun-08 2vwg
Zn
Title: haloferax mediterranei glucose dehydrogenase in complex with nadp, zn and gluconolactone.
Author: p. j. baker, k. l. britton, m. fisher, j. esclapez, c. pire, m. j. bonete, j. ferrer, d. w. rice
Keywords: zinc dependent medium chain alcohol dehydrogenase family, glucose dehydrogenase, alcohol dehydrogenase
- 2vwh.pdb.
oxidoreductase 24-jun-08 2vwh
Zn
Title: haloferax mediterranei glucose dehydrogenase in complex with nadp, zn and glucose.
Author: p. j. baker, k. l. britton, m. fisher, j. esclapez, c. pire, m. j. bonete, j. ferrer, d. w. rice
Keywords: glucose dehydrogenase, zinc dependent medium chain alcohol dehydrogenase family, alcohol dehydrogenase
- 2vwp.pdb.
oxidoreductase 26-jun-08 2vwp
Zn
Title: haloferax mediterranei glucose dehydrogenase in complex with nadph and zn.
Author: p. j. baker, k. l. britton, m. fisher, j. esclapez, c. pire, m. j. bonete, j. ferrer, d. w. rice
Keywords: glucose dehydrogenase, zinc dependent medium chain alcohol dehydrogenase family, alcohol dehydrogenase
- 2vwq.pdb.
oxidoreductase 26-jun-08 2vwq
Zn
Title: haloferax mediterranei glucose dehydrogenase in complex with nadp and zn.
Author: p. j. baker, k. l. britton, m. fisher, j. esclapez, c. pire, m. j. bonete, j. ferrer, d. w. rice
Keywords: glucose dehydrogenase, zinc dependent medium chain alcohol dehydrogenase family, alcohol dehydrogenase
- 2vyu.pdb.
choline-binding protein 28-jul-08 2vyu
Title: crystal structure of choline binding protein f from streptococcus pneumoniae in the presence of a peptidoglycan analogue (tetrasaccharide-pentapeptide)
Author: i. perez-dorado, r. molina, j. a. hermoso, s. mobashery
Keywords: cbpf, peptidoglycan, choline-binding-protein, lipid-binding protein
- 2w1n.pdb.
hydrolase 17-oct-08 2w1n
Title: cohesin and fibronectin type-iii double module construct from the clostridium perfringens glycoside hydrolase gh84c
Author: e. ficko-blean, k. j. gregg, j. j. adams, j. h. hehemann, m. czjzek, s. j. smith, a. b. boraston
Keywords: glycoside hydrolase, fibronectin type-iii, clostridium perfringens, beta-n-acetylglucosaminidase, cohesin, hydrolase, coiled coil, glycosidase
- 2w23.pdb.
oxidoreductase 23-oct-08 2w23
Fe Ca
Title: structure of mutant w169y of pleurotus eryngii versatile peroxidase (vp)
Author: f. j. ruiz-duenas, r. pogni, m. morales, s. giansanti, m. j. mate, a. romero, m. j. martinez, r. basosi, a. t. martinez
Keywords: metal-binding
- 2w2j.pdb.
lyase 31-oct-08 2w2j
Cl
Title: crystal structure of the human carbonic anhydrase related protein viii
Author: a. kramm, j. r. c. muniz, s. picaud, f. von delft, e. pilka, w. w. yue, o. n. f. king, g. kochan, a. c. w. pike, p. filippakopoulos, c. arrowsmith, m. wikstrom, a. edwards, c. bountra, u. oppermann
Keywords: lyase, metal-binding
- 2w38.pdb.
transferase 07-nov-08 2w38
Title: crystal structure of the pseudaminidase from pseudomonas aeruginosa
Author: g. xu, c. ryan, m. j. kiefel, j. c. wilson, g. l. taylor
Keywords: sialidase, neuraminidase, pseudaminic acid
- 2w3o.pdb.
hydrolase,transferase/peptide 13-nov-08 2w3o
Ca
Title: crystal structure of the human pnkp fha domain in complex with an xrcc1-derived phosphopeptide
Author: a. w. oliver, a. a. e. ali, l. h. pearl
Keywords: polymorphism, phosphoprotein, phospho- peptide, nucleotide-binding, base excision repair
- 2w40.pdb.
transferase 18-nov-08 2w40
Title: crystal structure of plasmodium falciparum glycerol kinase with bound glycerol
Author: c. schnick, s. d. polley, q. l. fivelman, l. ranford-cartwright, s. r. wilkinson, j. a. brannigan, a. j. wilkinson, d. a. baker
Keywords: kinase, malaria, plasmodium, transferase, sugar kinase/hsp70/actin superfamily, glycerol kinase, open conformation
- 2w41.pdb.
transferase 18-nov-08 2w41
Title: crystal structure of plasmodium falciparum glycerol kinase with adp
Author: c. schnick, s. d. polley, q. l. fivelman, l. ranford-cartwright, s. r. wilkinson, j. a. brannigan, a. j. wilkinson, d. a. baker
Keywords: kinase, malaria, plasmodium, transferase, sugar kinase/hsp70/actin superfamily, glycerol kinase, open conformation
- 2w4i.pdb.
isomerase 25-nov-08 2w4i
Title: crystal structure of helicobacter pylori glutamate racemase in complex with d-glutamate and an inhibitor
Author: t. lundqvist
Keywords: cell shape, glutamate racemase, cell wall biogenesis/degradation, peptidoglycan synthesis, peptidoglycan biosynthesis
- 2w5q.pdb.
transferase 11-dec-08 2w5q
Mn
Title: structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Author: d. lu, m. e. wormann, x. zhang, o. scheewind, a. grundling, p. s. freemont
Keywords: cell wall biogenesis/degradation, ltas, membrane, secreted, transferase, cell membrane
- 2w5r.pdb.
transferase 11-dec-08 2w5r
Mn
Title: structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Author: d. lu, m. e. wormann, x. zhang, o. schneewind, a. grundling, p. s. freemont
Keywords: cell wall biogenesis/degradation, ltas, membrane, secreted, transferase, cell membrane
- 2w5s.pdb.
transferase 11-dec-08 2w5s
Mn
Title: structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Author: d. lu, m. e. wormann, x. zhang, o. schneewind, a. grundling, p. s. freemont
Keywords: cell wall biogenesis/degradation, ltas, membrane, secreted, transferase, cell membrane
- 2w5t.pdb.
transferase 11-dec-08 2w5t
Mn
Title: structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Author: d. lu, m. e. wormann, x. zhang, o. schneewind, a. grundling, p. s. freemont
Keywords: glycerol-phosphate, cell wall biogenesis/degradation, ltas, membrane, secreted, transferase, cell membrane
- 2w69.pdb.
transcription 17-dec-08 2w69
Mn
Title: influenza polymerase fragment
Author: a. dias, d. bouvier, t. crepin, a. a. mccarthy, d. j. hart, f. baudin, s. cusack, r. w. h. ruigrok
Keywords: rna polymerase, transcription
- 2w6r.pdb.
lyase 18-dec-08 2w6r
Title: crystal structure of an artificial (ba)8-barrel protein designed from identical half barrels
Author: b. hocker, a. lochner, t. seitz, j. claren, r. sterner
Keywords: fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold, vitamin b12
- 2w8m.pdb.
hydrolase 17-jan-09 2w8m
Title: structure of d212, a nuclease from a fusselovirus.
Author: s. k. menon, m. j. young, c. m. lawrence
Keywords: ssvrh, nuclease, crenarchaeal virus, hydrolase
- 2w93.pdb.
lyase 21-jan-09 2w93
Mg
Title: crystal structure of the saccharomyces cerevisiae pyruvate decarboxylase variant e477q in complex with the surrogate pyruvamide
Author: s. kutter, m. s. weiss, s. konig
Keywords: pyruvate decarboxylase, branched-chain amino acid catabolism, metal-binding, thiohemiketal, decarboxylase
- 2w9d.pdb.
immune system 23-jan-09 2w9d
Ca
Title: structure of fab fragment of the icsm 18 - anti-prp therapeutic antibody at 1.57 a resolution.
Author: s. v. antonyuk, c. r. trevitt, r. w. strange, g. s. jackson, d. sangar, m. batchelor, s. jones, t. georgiou, s. cooper, c. fraser, a. khalili-shirazi, a. r. clarke, s. s. hasnain, j. collinge
Keywords: prion, prp, fab
- 2w9e.pdb.
immune system 23-jan-09 2w9e
Title: structure of icsm 18 (anti-prp therapeutic antibody) fab fragment complexed with human prp fragment 119-231
Author: s. v. antonyuk, c. r. trevitt, r. w. strange, g. s. jackson, d. sangar, m. batchelor, s. jones, t. georgiou, s. cooper, c. fraser, a. khalili-shirazi, a. r. clarke, s. s. hasnain, j. collinge
Keywords: prp, prion, membrane, gpi-anchor, lipoprotein, golgi apparatus, disease mutation, immune system, polymorphism, glycoprotein, cell membrane
- 2w9j.pdb.
signaling protein 25-jan-09 2w9j
As
Title: the crystal structure of srp14 from the schizosaccharomyces pombe signal recognition particle
Author: m. a. brooks, r. b. g. ravelli, a. a. mccarthy, k. strub, s. cusack
Keywords: radiation-induced phasing, rna-binding, ribonucleoprotein, signal recognition particle, signaling protein, arsenic, cytoplasm, alu-domain, cacodylate
- 2yyt.pdb.
lyase 02-may-07 2yyt
Title: crystal structure of uncharacterized conserved protein from thermotoga maritima
Author: m. kanagawa, s. baba, y. nakamura, y. bessho, s. kuramitsu, s. yokoyama, g. kawai, g. sampei, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, lyase
- 2yyu.pdb.
lyase 02-may-07 2yyu
Title: crystal structure of uncharacterized conserved protein from thermotoga maritima
Author: m. kanagawa, s. baba, y. nakamura, y. bessho, s. kuramitsu, s. yokoyama, g. kawai, g. sampei, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, lyase
- 2zfy.pdb.
hydrolase 16-jan-08 2zfy
Title: crystal structure of human otubain 1
Author: m. akutsu, j. r. walker, y. li, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: otubain, structural genomics, structural genomics consortium, sgc, alternative splicing, hydrolase, immune response, phosphoprotein, protease, thiol protease, ubl conjugation pathway
- 2zga.pdb.
hydrolase 21-jan-08 2zga
Title: hiv-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (hexagonal space group)
Author: j. boettcher, a. blum, a. heine, w. e. diederich, g. klebe
Keywords: hydrolase
- 2zhk.pdb.
sugar binding protein 06-feb-08 2zhk
Title: crystal structure of human galectin-9 n-terminal crd in complex with n-acetyllactosamine dimer (crystal 1)
Author: m. nagae, n. nishi, t. murata, t. usui, t. nakamura, s. wakatsuki, r. kato
Keywords: carbohydrate binding protein, galectin, alternative splicing, cytoplasm, polymorphism, secreted, sugar binding protein
- 2zhl.pdb.
sugar binding protein 06-feb-08 2zhl
Title: crystal structure of human galectin-9 n-terminal crd in complex with n-acetyllactosamine dimer (crystal 2)
Author: m. nagae, n. nishi, t. murata, t. usui, t. nakamura, s. wakatsuki, r. kato
Keywords: carbohydrate binding protein, galectin, sugar binding protein
- 2zhm.pdb.
sugar binding protein 06-feb-08 2zhm
Title: crystal structure of human galectin-9 n-terminal crd in complex with n-acetyllactosamine trimer (crystal 1)
Author: m. nagae, n. nishi, t. murata, t. usui, t. nakamura, s. wakatsuki, r. kato
Keywords: carbohydrate binding protein, galectin, sugar binding protein
- 2zhn.pdb.
sugar binding protein 06-feb-08 2zhn
Title: crystal structure of human galectin-9 n-terminal crd in complex with n-acetyllactosamine trimer (crystal 2)
Author: m. nagae, n. nishi, t. murata, t. usui, t. nakamura, s. wakatsuki, r. kato
Keywords: carbohydrate binding protein, galectin, sugar binding protein
- 2zjc.pdb.
cytokine 05-mar-08 2zjc
Title: tnfr1 selectve tnf mutant; r1-6
Author: y. mukai, y. yamagata, y. tsutsumi
Keywords: tnfr1 selectivity, tnf, agonist, mutant, cytokine, lipoprotein, membrane, myristate, phosphoprotein, polymorphism, secreted, signal-anchor, transmembrane
- 2zm1.pdb.
transferase 10-apr-08 2zm1
Cl
Title: crystal structure of imidazo pyrazin 1 bound to the kinase domain of human lck, (auto-phosphorylated on tyr394)
Author: e. tsuji
Keywords: nucleotide- binding, palmitate, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
- 2zm4.pdb.
transferase 11-apr-08 2zm4
Cl
Title: crystal structure of imidazo quinoxaline 1 bound to the kinase domain of human lck, activated form (auto- phosphorylated on tyr394)
Author: e. tsuji
Keywords: nucleotide- binding, palmitate, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
- 2zp8.pdb.
rna binding protein/transcription 08-jul-08 2zp8
Zn
Title: the nature of the trap:anti-trap complex
Author: m. watanabe, j. g. heddle, s. unzai, s. akashi, s. y. park, j. r. h. tame
Keywords: transcription, rna-binding, transcription regulation, cytoplasm, rna binding protein/transcription complex
- 2zp9.pdb.
rna binding protein/transcription 08-jul-08 2zp9
Zn
Title: the nature of the trap:anti-trap complex
Author: m. watanabe, j. g. heddle, s. unzai, s. akashi, s. y. park, j. r. h. tame
Keywords: transcription, rna-binding, transcription regulation, cytoplasm, rna binding protein/transcription complex
- 2zqe.pdb.
dna binding protein 08-aug-08 2zqe
Title: crystal structure of the smr domain of thermus thermophilus muts2
Author: k. fukui, y. kitamura, n. nakagawa, r. masui, s. kuramitsu
Keywords: atp-binding, dna-binding, nucleotide-binding, dna binding protein
- 2zr2.pdb.
ligase 22-aug-08 2zr2
Title: crystal structure of seryl-trna synthetase from pyrococcus horikoshii complexed with atp
Author: y. itoh, s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2zr3.pdb.
ligase 22-aug-08 2zr3
Title: crystal structure of seryl-trna synthetase from pyrococcus horikoshii
Author: y. itoh, s. sekine, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
- 2zuo.pdb.
structural protein 24-oct-08 2zuo
Title: the structure of rat liver vault at 3.5 angstrom resolution
Author: k. kato, y. zhou, h. tanaka, m. yao, e. yamashita, m. yoshimura, t. tsukihara
Keywords: protein-protein complex, cytoplasm, ribonucleoprotein, structural protein
- 2zux.pdb.
lyase 28-oct-08 2zux
Ca
Title: crystal structure of rhamnogalacturonan lyase yesw complexed with rhamnose
Author: a. ochiai, t. itoh, b. mikami, w. hashimoto, k. murata
Keywords: lyase, rhamnose complex
- 2zuy.pdb.
lyase 28-oct-08 2zuy
Ca
Title: crystal structure of exotype rhamnogalacturonan lyase yesx
Author: a. ochiai, t. itoh, b. mikami, w. hashimoto, k. murata
Keywords: lyase
- 2zv4.pdb.
structural protein 01-nov-08 2zv4
Title: the structure of rat liver vault at 3.5 angstrom resolution
Author: k. kato, y. zhou, h. tanaka, m. yao, e. yamashita, m. yoshimura, t. tsukihara
Keywords: protein-protein complex, cytoplasm, ribonucleoprotein, structural protein
- 2zv5.pdb.
structural protein 01-nov-08 2zv5
Title: the structure of rat liver vault at 3.5 angstrom resolution
Author: k. kato, y. zhou, h. tanaka, m. yao, e. yamashita, m. yoshimura, t. tsukihara
Keywords: protein-protein complex, cytoplasm, ribonucleoprotein, structural protein
- 2zvu.pdb.
oxidoreductase 21-nov-08 2zvu
Fe
Title: crystal structure of rat heme oxygenase-1 in complex with ferrous verdoheme
Author: h. sato, m. sugishima, k. fukuyama, m. noguchi
Keywords: oxidoreductase, endoplasmic reticulum, heme, iron, metal-binding, microsome, phosphoprotein
- 2zxc.pdb.
hydrolase 22-dec-08 2zxc
Mg Zn
Title: seramidase complexed with c2
Author: h. okano, t. inoue, n. okino, y. kakuta, h. matsumura, m. itoh
Keywords: hydrolase, lipid metabolism, secreted
- 2zyb.pdb.
transferase 19-jan-09 2zyb
Title: crystal structure of phenylimidazo pyrazin 2 bound to the kinase domain of human lck, (auto-phosphorylated on tyr394)
Author: e. tsuji
Keywords: nucleotide-binding, palmitate, phosphoprotein, proto- oncogene, sh2 domain, sh3 domain, transferase, cell membrane, polymorphism
- 2zyc.pdb.
hydrolase 19-jan-09 2zyc
Title: crystal structure of peptidoglycan hydrolase from sphingomonas sp. a1
Author: a. ochiai, b. mikami, w. hashimoto, k. murata
- 3b7o.pdb.
hydrolase 31-oct-07 3b7o
Title: crystal structure of the human tyrosine phosphatase shp2 (ptpn11) with an accessible active site
Author: e. ugochukwu, a. barr, a. patel, o. king, f. niesen, e. salah, p. savitsky, e. s. pilka, j. elkins, c. h. arrowsmith, j. weigelt, a. m. edwards, f. von delft, s. knapp, structural genomics consortium (sgc)
Keywords: sh2 domain
- 3bvn.pdb.
immune system 07-jan-08 3bvn
Title: high resolution crystal structure of hla-b*1402 in complex with the latent membrane protein 2 peptide (lmp2) of epstein-barr virus
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: pyrrolidone carboxylic acid, secreted, alternative splicing, cytoplasm, host-virus interaction, membrane, phosphoprotein, transmembrane, ubl conjugation, immune system
- 3bwj.pdb.
transferase 09-jan-08 3bwj
Title: complex of pka with the bisubstrate protein kinase inhibitor lead compound arc-1034
Author: d. lavogina, n. koenig, a. uri, d. bossemeyer
Keywords: r2k316a_377_refmac16new_mol
- 3bxn.pdb.
immune system 14-jan-08 3bxn
Title: the high resolution crystal structure of hla-b*1402 complexed with a cathepsin a signal sequence peptide, pcata
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: mhc, human leokocyte antigen, hla, hla-b14, hla-b*1402, hla-b1402, hla-b*14, pcata, cathepsin a, ankylosing spondylitis, autoimmunity, immune system
- 3bz1.pdb.
electron transport 17-jan-08 3bz1
Cl Mg Mn Fe Ca
Title: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this file contains first monomer of psii dimer
Author: a. guskov, a. gabdulkhakov, j. kern, m. broser, a. zouni, w. saenger
Keywords: ps ii, ps2, membrane complex, transmembrane alpha-helix, herbicide resistance, iron, metal-binding, photosynthesis, photosystem ii, thylakoid, heme, reaction center, manganese
- 3c14.pdb.
lyase/lyase inhibitor 22-jan-08 3c14
Cl Mg Ca
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with pyrophosphate and ca
Author: t. -c. mou, s. r. sprang
Keywords: nucleotide-binding, palmitate, transducer, lyase/lyase inhibitor complex
- 3c15.pdb.
lyase/lyase inhibitor 22-jan-08 3c15
Cl Mg
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with pyrophosphate and mg
Author: t. -c. mou, s. r. sprang
Keywords: palmitate, transducer, lyase/lyase inhibitor complex
- 3c16.pdb.
lyase/lyase inhibitor 22-jan-08 3c16
Cl Mg Ca
Title: complex of gs-alpha with the catalytic domains of mammalian adenylyl cyclase: complex with adenosine-5'-triphosphate and ca
Author: t. -c. mou, s. r. sprang
Keywords: palmitate, transducer, lyase/lyase inhibitor complex
- 3c1q.pdb.
transport protein 24-jan-08 3c1q
Cl Na Ca Se
Title: the three-dimensional structure of the cytoplasmic domains of epsf from the type 2 secretion system of vibrio cholerae
Author: j. abendroth, d. d. mitchell, k. v. korotkov, a. kreeger, w. g. j. hol
Keywords: t2ss, t4pb, cholera, inner membrane, membrane, transmembrane, transport protein
- 3c2n.pdb.
transferase 25-jan-08 3c2n
Zn
Title: trna-guanine transglycosylase (tgt) in complex with 6-amino- 2-(2-morpholin-4-yl-ethylamino)-1,7-dihydro-imidazo[4,5- g]quinazolin-8-one
Author: t. ritschel, a. heine, g. klebe
Keywords: glycosyltransferase, metal-binding, queuosine biosynthesis, transferase, trna processing, zinc
- 3c2y.pdb.
transferase 26-jan-08 3c2y
Zn
Title: trna-guanine transglycosylase (tgt) in complex with 6-amino- 2-methyl-1,7-dihydro-imidazo[4,5-g]quinazolin-8-one
Author: t. ritschel, a. heine, g. klebe
Keywords: tim barrel, glycosyltransferase, metal-binding, queuosine biosynthesis, trna processing, zinc
- 3c2z.pdb.
transferase 26-jan-08 3c2z
Zn
Title: trna-guanine transglycosylase (tgt) in complex with 6-amino- 2-[(thiophen-2-ylmethyl)-amino]-1,7-dihydro-imidazo[4,5- g]quinazolin-8-one
Author: t. ritschel, a. heine, g. klebe
Keywords: transferase, glycosyltransferase, metal-binding, queuosine biosynthesis, trna processing, zinc
- 3c30.pdb.
signaling protein, transferase 27-jan-08 3c30
Se
Title: crystal structure of the vibrio cholerae luxq periplasmic domain (semet)
Author: b. slama, w. hendrickson
Keywords: quorum sensing, histidine kinase, hydrolase, inner membrane, membrane, phosphoprotein, protein phosphatase, transferase, transmembrane, two- component regulatory system, signaling protein
- 3c37.pdb.
hydrolase 27-jan-08 3c37
Zn Se
Title: x-ray structure of the putative zn-dependent peptidase q74d82 at the resolution 1.7 a. northeast structural genomics consortium target gsr143a
Author: a. p. kuzin, c. yang, j. seetharaman, s. m. vorobiev, f. forouhar, d. wang, l. mao, m. maglaqui, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: q74d82, gsr143a, peptidase, m48 family, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, hydrolase, metalloprotease, protease, zinc
- 3c41.pdb.
hydrolase 29-jan-08 3c41
Mg
Title: abc protein artp in complex with amp-pnp/mg2+
Author: p. f. thaben, v. eckey, f. scheffel, w. saenger, e. schneider, a. vahedi-faridi
Keywords: atpase, hydrolase
- 3c4i.pdb.
dna binding protein 30-jan-08 3c4i
Title: crystal structure analysis of n terminal region containing the dimerization domain and dna binding domain of hu protein(histone like protein-dna binding) from mycobacterium tuberculosis [h37rv]
Author: t. bhowmick, u. a. ramagopal, s. ghosh, v. nagaraja, s. ramakumar
Keywords: dna condensation, dna-binding, dna binding protein
- 3c4j.pdb.
hydrolase 30-jan-08 3c4j
Mg
Title: abc protein artp in complex with atp-gamma-s
Author: p. f. thaben, v. eckey, f. scheffel, w. saenger, e. schneider, a. vahedi-faridi
Keywords: atpase, hydrolase
- 3chm.pdb.
plant protein 10-mar-08 3chm
Mg
Title: crystal structure of pci domain from a. thaliana cop9 signalosome subunit 7 (csn7)
Author: m. dessau, j. a. hirsch
Keywords: winged helix motif, alternative splicing, cytoplasm, developmental protein, nucleus, phosphoprotein, phytochrome signaling pathway, signalosome, plant protein
- 3cim.pdb.
structural protein 11-mar-08 3cim
Title: carboxysome shell protein, ccmk2 c-terminal deletion mutant
Author: s. tanaka, m. r. sawaya, t. o. yeates
Keywords: structural protein
- 3cly.pdb.
transferase 20-mar-08 3cly
Mg
Title: crystal structure of fgf receptor 2 (fgfr2) kinase domains trapped in trans-phosphorylation reaction
Author: h. chen, m. mohammadi
Keywords: membrane, nucleotide-binding, phosphoprotein, polymorphism, receptor, secreted, transferase, transmembrane, tyrosine-protein kinase
- 3d0s.pdb.
transcription 02-may-08 3d0s
Cl
Title: camp receptor protein from m.tuberculosis, camp-free form
Author: d. t. gallagher, h. robinson, p. t. reddy
Keywords: dimer, inactive(apo, unliganded) form, allostery, dna binding, cyclic amp, transcription regulation, catabolite gene activator protein, dna-binding, nucleotide-binding, transcription
- 3dg0.pdb.
ribosome 12-jun-08 3dg0
(cryo-electron microscopy)
Title: coordinates of 16s and 23s rrnas fitted into the cryo-em map of ef-g-bound translocation complex
Author: h. gao, j. lebarron, j. frank
- 3dg2.pdb.
ribosome 12-jun-08 3dg2
(cryo-electron microscopy)
Title: coordinates of 16s and 23s rrnas fitted into the cryo-em map of a pretranslocation complex
Author: h. gao, j. lebarron, j. frank
Keywords: pretranslocation, ratchet motion
- 3dg4.pdb.
ribosome 12-jun-08 3dg4
(cryo-electron microscopy)
Title: coordinates of 16s and 23s rrnas fitted into the cryo-em map of rf1-bound termination complex
Author: h. gao, j. lebarron, j. frank
Keywords: termination, ratchet motion
- 3dg5.pdb.
ribosome 12-jun-08 3dg5
(cryo-electron microscopy)
Title: coordinates of 16s and 23s rrnas fitted into the cryo-em map of rf3-bound termination complex
Author: h. gao, j. lebarron, j. frank
Keywords: termination, ratchet motion
- 3dox.pdb.
hydrolase 07-jul-08 3dox
Title: x-ray structure of hiv-1 protease in situ product complex
Author: m. v. hosur, j. -l. ferrer, a. das, v. prashar, s. bihani
Keywords: transferase, viral nucleoprotein, virion, zinc, zinc-finger
- 3dxl.pdb.
odorant-binding protein 24-jul-08 3dxl
Cl
Title: crystal structure of aed7 from aedes aegypti
Author: j. f. andersen, e. calvo, b. j. mans, j. m. ribeiro
Keywords: all-helical, allergen, secreted
- 3dy9.pdb.
odorant-binding protein 25-jul-08 3dy9
Br
Title: crystal structure of d7ae potassium bromide soak
Author: j. f. andersen, e. calvo, b. j. mans, j. m. ribeiro
Keywords: all-helical, secreted, x-ray diffraction, allergen
- 3dye.pdb.
odorant-binding protein 27-jul-08 3dye
Br
Title: crystal structure of aed7-norepineprhine complex
Author: j. f. andersen, e. calvo, b. j. mans, j. m. ribeiro
Keywords: all-helical, secreted, x-ray diffraction, allergen
- 3dzt.pdb.
odorant-binding protein 30-jul-08 3dzt
Cl
Title: aed7-leukotriene e4 complex
Author: j. f. andersen, e. calvo, b. j. mans, j. m. ribeiro
Keywords: all-helical, secreted, x-ray diffraction, allergen
- 3e29.pdb.
structural genomics, unknown function 05-aug-08 3e29
Se
Title: x-ray structure of the protein q7we92_borbr from thioesterase superfamily. northeast structural genomics consortium target bor214a.
Author: a. p. kuzin, y. chen, j. setharaman, d. wang, l. mao, e. l. foote, r. xiao, r. nair, j. k. everett, t. b. acton, b. rost, g. t. montelione, l. tong, j. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
- 3e2q.pdb.
oxidoreductase 06-aug-08 3e2q
Title: crystal structure reduced puta86-630 mutant y540s complexed with trans-4-hydroxy-l-proline
Author: j. j. tanner
Keywords: puta, flavoenzyme, dna-binding, fad, flavoprotein, multifunctional enzyme, nad, oxidoreductase, proline metabolism, repressor, transcription, transcription regulation
- 3e2r.pdb.
oxidoreductase 06-aug-08 3e2r
Title: crystal structure puta86-630 mutant y540s complexed with l- tetrahydro-2-furoic acid
Author: j. j. tanner
Keywords: puta, flavoenzyme, dna-binding, fad, flavoprotein, multifunctional enzyme, nad, oxidoreductase, proline metabolism, repressor, transcription, transcription regulation
- 3e2s.pdb.
oxidoreductase 06-aug-08 3e2s
Title: crystal structure reduced puta86-630 mutant y540s complexed with l-proline
Author: j. j. tanner
Keywords: puta, flavoenzyme, dna-binding, fad, flavoprotein, multifunctional enzyme, nad, oxidoreductase, proline metabolism, repressor, transcription, transcription regulation
- 3eag.pdb.
ligase 25-aug-08 3eag
Se
Title: the crystal structure of udp-n-acetylmuramate:l-alanyl- gamma-d-glutamyl-meso-diaminopimelate ligase (mpl) from neisseria meningitides
Author: c. chang, r. hendricks, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: nucleotide-binding
- 3ebk.pdb.
allergen 28-aug-08 3ebk
Title: crystal structure of major allergens, bla g 4 from cockroaches
Author: y. w. tan, s. l. chan, f. t. chew, j. sivaraman, y. k. mok
Keywords: allergen, cockroach, glycoprotein, secreted
- 3ebw.pdb.
allergen 28-aug-08 3ebw
Se
Title: crystal structure of major allergens, per a 4 from cockroaches
Author: y. w. tan, s. l. chan, f. t. chew, j. sivaraman, y. k. mok
Keywords: allergen, cockroach
- 3ec5.pdb.
membrane protein 28-aug-08 3ec5
Title: the crystal structure of thioflavin-t (tht) binding ospa mutant
Author: m. biancalana, k. makabe, a. koide, s. koide
Keywords: membrane protein
- 3eir.pdb.
unknown function 17-sep-08 3eir
Title: crystal structure of chbp, a cif homologue from burkholderia pseudomallei
Author: q. yao, y. zhu, f. shao
Keywords: unknown function
- 3eit.pdb.
unknown function 17-sep-08 3eit
Se
Title: the 2.6 angstrom crystal structure of chbp, the cif homologue from burkholderia pseudomallei
Author: q. yao, y. zhu, f. shao
Keywords: apain superfamily, hydrolytic enzyme, unknown function
- 3ejh.pdb.
cell adhesion 18-sep-08 3ejh
Title: crystal structure of the fibronectin 8-9fni domain pair in complex with a type-i collagen peptide
Author: m. c. erat, e. d. lowe, i. d. campbell, i. vakonakis
Keywords: pyrrolidone carboxylic acid, secreted, sulfation
- 3enj.pdb.
lyase, transferase 25-sep-08 3enj
He Cl Hg
Title: structure of pig heart citrate synthase at 1.78 a resolution
Author: s. b. larson, j. s. day, c. nguyen, r. cudney, a. mcpherson, center for high-throughput structural biology (chtsb)
Keywords: lyase
- 3eqn.pdb.
hydrolase 01-oct-08 3eqn
Zn Na
Title: crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a)
Author: t. ishida, s. fushinobu, r. kawai, m. kitaoka, k. igarashi, m. samejima
Keywords: glycosidase, hydrolase
- 3eqo.pdb.
hydrolase 01-oct-08 3eqo
Zn
Title: crystal structure of beta-1,3-glucanase from phanerochaete chrysosporium (lam55a) gluconolactone complex
Author: t. ishida, s. fushinobu, r. kawai, m. kitaoka, k. igarashi, m. samejima
Keywords: glycosidase, hydrolase
- 3exj.pdb.
transcription/dna 16-oct-08 3exj
Zn
Title: crystal structure of a p53 core tetramer bound to dna
Author: k. a. malecka
Keywords: phosphoprotein, transcription, transcription regulation, ubl conjugation, zinc, transcription/dna complex
- 3exl.pdb.
transcription/dna 16-oct-08 3exl
Zn
Title: crystal structure of a p53 core tetramer bound to dna
Author: k. a. malecka
Keywords: phosphoprotein, transcription, transcription regulation, ubl conjugation, zinc, transcription/dna complex
- 3exo.pdb.
hydrolase 16-oct-08 3exo
Title: crystal structure of bace1 bound to inhibitor
Author: t. j. allison
Keywords: bace 1, aspartyl protease, alternative splicing, glycoprotein, hydrolase, membrane, protease, transmembrane, zymogen
- 3eyg.pdb.
transferase 20-oct-08 3eyg
Title: dissecting specificity in the janus kinases: the structures of jak-specific inhibitors complexed to the jak1 and jak2 protein tyrosine kinase domain
Author: n. k. williams, r. s. bamert, o. patell, c. wang, p. m. walden, e. fantino
Keywords: atp-binding, kinase, nucleotide-binding, phosphoprotein, sh2 domain, transferase, tyrosine-protein kinase
- 3eyh.pdb.
transferase 20-oct-08 3eyh
F
Title: dissecting specificity in the janus kinases: the structures of jak-specific inhibitors complexed to the jak1 and jak2 protein tyrosine kinase domain
Author: n. k. williams, r. s. bamert, o. patell, c. wang, p. m. walden, e. fantino
Keywords: atp-binding, kinase, nucleotide-binding, phosphoprotein, sh2 domain, transferase, tyrosine-protein kinase
- 3ezr.pdb.
transferase 23-oct-08 3ezr
Title: cdk-2 with indazole inhibitor 17 bound at its active site
Author: j. r. kiefer, j. e. day, n. l. caspers, k. j. mathis, k. k. kretzmer, r. a. weinberg, b. a. reitz, r. a. stegeman, j. i. trujillo, w. huang, a. thorarensen, l. xing, a. wrightstone, l. christine, r. compton, x. li
Keywords: pkc, protein kinase, inhibitor, atp-binding, cell cycle, cell division, mitosis, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3ezv.pdb.
transferase 23-oct-08 3ezv
Title: cdk-2 with indazole inhibitor 9 bound at its active site
Author: j. r. kiefer, j. e. day, n. l. caspers, k. j. mathis, k. k. kretzmer, r. a. weinberg, b. a. reitz, r. a. stegeman, j. i. trujillo, w. huang, a. thorarensen, l. xing, a. wrightstone, l. christine, r. compton, x. li
Keywords: pkc, protein kinase, inhibitor, atp-binding, cell cycle, cell division, mitosis, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3f1j.pdb.
viral protein 28-oct-08 3f1j
Se
Title: crystal structure of the borna disease virus matrix protein (bdv-m) reveals rna binding properties
Author: p. neumann, d. lieber, s. meyer, p. dautel, a. kerth, i. kraus, w. garten, m. t. stubbs
Keywords: rna binding, membrane binding, viruses, ssrna negative-strand viruses, mononegavirales; bornaviridae, bornavirus, alternative splicing, cytoplasm, virion, viral protein
- 3f1x.pdb.
transferase 28-oct-08 3f1x
Se
Title: three dimensional structure of the serine acetyltransferase from bacteroides vulgatus.
Author: a. p. kuzin, y. chen, j. seetharaman, s. sahdev, d. wang, l. mao, k. cunningham, m. maglaqui, r. xiao, j. liu, j. k. everett, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, transferase
- 3f5x.pdb.
transferase/cell cycle 04-nov-08 3f5x
Title: cdk-2-cyclin complex with indazole inhibitor 9 bound at its active site
Author: j. r. kiefer, j. e. day, n. l. caspers, k. j. mathis, k. k. kretzmer, r. a. weinberg, b. a. reitz, r. a. stegeman, j. i. trujillo, w. huang, a. thorarensen, l. xing, a. wrightstone, l. christine, r. compton, x. li
Keywords: nucleus, transferase/cell cycle complex
- 3f6x.pdb.
transferase 06-nov-08 3f6x
Title: c-src kinase domain in complex with small molecule inhibitor
Author: m. a. seeliger, a. v. statsuk, d. j. maly, p. z. patrick, j. kuriyan, k. m. shokat
Keywords: atp-binding, alternative splicing, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto- oncogene, sh2 domain, sh3 domain, transferase, tyrosine- protein kinase
- 3fd3.pdb.
transcription regulator 24-nov-08 3fd3
Ca Se
Title: structure of the c-terminal domains of a lysr family protein from agrobacterium tumefaciens str. c58.
Author: m. e. cuff, x. xu, h. zeng, a. edwards, a. savchenko, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, lysr, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, dna-binding, transcription, transcription regulation, transcription regulator
- 3fd8.pdb.
oxidoreductase 25-nov-08 3fd8
Se
Title: crystal structure of an oxidoreductase from enterococcus faecalis
Author: l. damodharan, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: gfo/ldh/moca, psi-ii, 11133d1, structural genomics, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3fdj.pdb.
structural genomics, unknown function 25-nov-08 3fdj
Na Se
Title: the structure of a degv family protein from eubacterium eligens.
Author: m. e. cuff, r. hendricks, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: gut microbiome,, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3fe7.pdb.
cell cycle 28-nov-08 3fe7
Title: crystal structure of hdmx bound to the p53-peptidomimetic ac-phe-met-aib-pmp-trp-glu-ac3c-leu-nh2 at 1.35a
Author: j. kallen
Keywords: hdm4,human mdm4, human mdmx, protein-protein interaction, p53, cell cycle, alternative splicing, metal- binding, nucleus, polymorphism, zinc, zinc-finger
- 3fea.pdb.
cell cycle 28-nov-08 3fea
Cl
Title: crystal structure of hdmx bound to the p53-peptidomimetic ac-phe-met-aib-pmp-6-cl-trp-glu-ac3c-leu-nh2 at 1.33a
Author: j. kallen
Keywords: hdm4,human mdm4, human mdmx, protein-protein interaction, p53, metal-binding, nucleus, polymorphism, zinc, zinc-finger, cell cycle
- 3ff1.pdb.
isomerase 01-dec-08 3ff1
Na Se
Title: structure of glucose 6-phosphate isomerase from staphylococcus aureus
Author: s. m. anderson, j. s. brunzelle, o. onopriyenko, s. peterson, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
Keywords: rossmann fold, glucose-6-phosphate isomerase like protein, cytoplasm, gluconeogenesis, glycolysis, isomerase, structural genomics, center for structural genomics of infectious diseases, csgid
- 3ffe.pdb.
biosynthetic protein 03-dec-08 3ffe
Title: structure of achromobactin synthetase protein d, (acsd)
Author: s. a. mcmahon, h. liu, l. carter, m. oke, k. a. johnson, s. schmelz, g. l. challis, m. f. white, j. h. naismith, scottish structural proteomics facility (sspf)
Keywords: adenylating enzyme, siderophore, structural genomics, scottish structural proteomics facility, sspf, biosynthetic protein
- 3fhj.pdb.
translation 09-dec-08 3fhj
Title: independent saturation of three trprs subsites generates a partially-assembled state similar to those observed in molecular simulations
Author: p. laowanapiban, m. kapustina, c. vonrhein, m. delarue, p. koehl, c. w. carter jr.
Keywords: mechanistic pathway, molecular simulations, aminoacyl-trna synthetase, atp- binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, translation
- 3fi0.pdb.
translation 10-dec-08 3fi0
Se
Title: crystal structure analysis of b. stearothermophilus tryptophanyl-trna synthetase complexed with tryptophan, amp, and inorganic phosphate
Author: p. laowanapiban, m. kapustina, c. vonrhein, m. delarue, p. koehl, c. w. carter jr.
Keywords: aminoacyl-trna synthetase, atp- binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, translation
- 3fkd.pdb.
lyase 16-dec-08 3fkd
Se
Title: the crystal structure of l-threonine-o-3-phosphate decarboxylase from porphyromonas gingivalis
Author: z. zhang, s. eswaramoorthy, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: nysgxrc, lyase
- 3flv.pdb.
lipid binding protein 19-dec-08 3flv
Title: the crystal structure of human acyl-coenzymea binding domain containing 5
Author: e. ugochukwu, a. roos, w. w. yue, n. shafqat, e. salah, p. savitsky, j. r. c. muniz, f. von delft, c. bountra, c. h. arrowsmith, j. weigelt, a. edwards, u. oppermann, structural genomics consortium (sgc)
Keywords: lipid binding protein
- 3fm5.pdb.
transcription regulator 19-dec-08 3fm5
Cl Mg Se
Title: x-ray crystal structure of transcriptional regulator (marr family) from rhodococcus sp. rha1
Author: b. nocek, x. xu, h. zheng, a. savchenko, a. m. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mcsg, pf04017, psi, marr, structural genomics, protein structure initiative, midwest center for structural genomics, transcription regulator
- 3foz.pdb.
transferase/rna 02-jan-09 3foz
Ca
Title: structure of e. coli isopentenyl-trna transferase in complex with e. coli trna(phe)
Author: e. seif, b. m. hallberg
Keywords: nucleoside modification, isopentenyl-trna transferase, miaa, transferase/rna complex
- 3fpk.pdb.
flavoprotein, oxidoreductase 05-jan-09 3fpk
Mg Ca
Title: crystal structure of ferredoxin-nadp reductase from salmonella typhimurium
Author: y. kim, m. gu, j. stam, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
Keywords: alpha-beta-roll, fad binding fold, structural genomics, center for structural genomics of infectious diseases, flavoprotein, oxidoreductase
- 3fpx.pdb.
oxidoreductase 06-jan-09 3fpx
Cu
Title: native fungus laccase from trametes hirsuta
Author: k. m. polyakov, t. v. fedorova, e. v. stepanova, e. a. cherkashin, s. a. kurzeev, b. v. strokopytov, v. s. lamzin, o. v. koroleva
Keywords: 4-copper protein, copper, metal-binding, oxidoreductase
- 3fqd.pdb.
hydrolase/protein binding 07-jan-09 3fqd
Mg Se
Title: crystal structure of the s. pombe rat1-rai1 complex
Author: s. xiang, l. tong
Keywords: exonuclease, hydrolase, mrna processing, nuclease, nucleus, rrna processing, transcription, transcription regulation, transcription termination, phosphoprotein, hydrolase/protein binding complex
- 3fqg.pdb.
protein binding 07-jan-09 3fqg
Mg
Title: crystal structure of the s. pombe rai1
Author: s. xiang, l. tong
Keywords: mrna processing, nucleus, phosphoprotein, rrna processing, transcription, transcription regulation, transcription termination, protein binding
- 3fqi.pdb.
protein binding 07-jan-09 3fqi
Mg
Title: crystal structure of the mouse dom3z
Author: s. xiang, l. tong
Keywords: protein binding
- 3fqj.pdb.
protein binding 07-jan-09 3fqj
Mg
Title: crystal structure of the mouse dom3z in complex with gdp
Author: s. xiang, l. tong
Keywords: protein binding
- 3frn.pdb.
structural genomics, unknown function 08-jan-09 3frn
Title: crystal structure of flagellar protein flga from thermotoga maritima msb8
Author: y. patskovsky, j. b. bonnano, r. romero, m. gilmore, s. hu, k. bain, j. koss, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: periplasmic, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, new york sgx research center for structural genomics, flagellum, unknown function
- 3fse.pdb.
structural genomics, unknown function 09-jan-09 3fse
Se
Title: crystal structure of two-domain protein containing dj- 1/thij/pfpi-like and ferritin-like domains. (yp_324989.1) from anabaena variabilis atcc 29413 at 1.90 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: two-domain protein containing dj-1/thij/pfpi- like and ferritin-like domains., structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3fv9.pdb.
hydrolase 15-jan-09 3fv9
Mg
Title: crystal structure of putative mandelate racemase/muconatelactonizing enzyme from roseovarius nubinhibens ism complexed with magnesium
Author: v. n. malashkevich, m. rutter, k. t. bain, c. lau, s. ozyurt, d. smith, s. wasserman, m. j. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: crystal structure, mandelate racemase/muconatelactonizing enzyme, hydrolase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3fvb.pdb.
metal binding protein 15-jan-09 3fvb
Cl Mg Na Fe
Title: crystal structure of ferritin (bacterioferritin) from brucella melitensis
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: ssgcid, decode, ferritin, structural genomics, seattle structural genomics center for infectious disease, metal binding protein
- 3fvy.pdb.
hydrolase 16-jan-09 3fvy
Cl Mg Zn
Title: crystal structure of human dipeptidyl peptidase iii
Author: a. dong, e. dobrovetsky, a. seitova, b. duncan, l. crombet, m. sundstrom, c. h. arrowsmith, a. m. edwards, c. bountra, a. bochkarev, d. cossar, structural genomics consortium (sgc)
Keywords: structural genomics consortium
- 3fxa.pdb.
structural genomics, unknown function 20-jan-09 3fxa
Se
Title: crystal structure of putative sugar-phosphate isomerase (yp_013136.1) from listeria monocytogenes 4b f2365 at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3fxg.pdb.
lyase 20-jan-09 3fxg
Mg Se
Title: crystal structure of rhamnonate dehydratase from gibberella zeae complexed with mg
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: enolase superfamily, nysgxrc, target 9265j, lyase, structural genomics, psi-2, protein structure initiative, new york sgx research center for structural genomics
- 3fxx.pdb.
transferase 21-jan-09 3fxx
Mg
Title: human epha3 kinase and juxtamembrane region bound to substrate kqwdnye[ptyr]iw
Author: t. davis, j. r. walker, f. mackenzie, j. weigelt, c. bountra, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: membrane, nucleotide-binding, phosphoprotein, polymorphism, receptor, secreted, transferase, transmembrane, tyrosine-protein kinase
- 3fy2.pdb.
transferase 21-jan-09 3fy2
Title: human epha3 kinase and juxtamembrane region bound to substrate kqwdnyefiw
Author: t. davis, j. r. walker, f. mackenzie, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: nucleotide- binding, phosphoprotein, polymorphism, receptor, secreted, transferase, transmembrane, tyrosine-protein kinase
- 3fyb.pdb.
structural genomics, unknown function 22-jan-09 3fyb
Cl Ca Se
Title: crystal structure of a protein of unknown function (duf1244) from alcanivorax borkumensis
Author: a. u. singer, e. evdokimova, o. kagan, a. m. edwards, a. joachimiak, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: duf1244, alcanivorax borkumensis, hydrocarbon-degrading, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, target apc7960
- 3fyq.pdb.
cell adhesion 22-jan-09 3fyq
Se
Title: structure of drosophila melanogaster talin ibs2 domain (residues 1981-2168)
Author: t. y. s cheung, m. j. fairchild, r. zarivach, g. tanentzapf, f. van petegem
Keywords: cell adhesion
- 3fyy.pdb.
isomerase 23-jan-09 3fyy
Mg
Title: crystal structure of divergent enolase from oceanobacillus iheyensis complexed with mg
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: nysgxrc, target 9375a, isomerase, structural genomics, psi-2, protein structure initiative, new york sgx research center for structural genomics
- 3fz5.pdb.
isomerase 23-jan-09 3fz5
Ca Se
Title: crystal structure of possible 2-hydroxychromene-2- carboxylate isomerase from rhodobacter sphaeroides
Author: c. chang, c. hatzos, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: 2-hydroxychromene-2-carboxylate isomerase, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, isomerase
- 3fz6.pdb.
lyase 23-jan-09 3fz6
Xe
Title: crystal structure of glutamate decarboxylase beta from escherichia coli: complex with xenon
Author: v. n. malashkevich, d. de biase, f. bossa
Keywords: pmp form, xenon, acetylation, cytoplasm, decarboxylase, lyase, membrane, pyridoxal phosphate
- 3fz7.pdb.
lyase 23-jan-09 3fz7
Title: crystal structure of apo glutamate decarboxylase beta from escherichia coli
Author: v. n. malashkevich, d. de biase, f. bossa
Keywords: apo, acetylation, cytoplasm, decarboxylase, lyase, membrane, pyridoxal phosphate
- 3fz8.pdb.
lyase 23-jan-09 3fz8
Title: crystal structure of glutamate decarboxylase beta from escherichia coli: reduced schiff base with plp
Author: v. n. malashkevich, d. de biase, f. bossa
Keywords: reduced form, acetylation, cytoplasm, decarboxylase, lyase, membrane, pyridoxal phosphate
- 3fzx.pdb.
structural genomics, unknown function 26-jan-09 3fzx
Ca Se
Title: crystal structure of putative exported protein with ymcc- like fold (yp_211880.1) from bacteroides fragilis nctc 9343 at 2.22 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative exported protein with ymcc-like fold, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
View back issues.
Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS