Recent PDB releases or updates: week of 9 January 2009

• 1ntj.pdb. immune system 30-jan-03 1ntj (solution scattering)
  Title: model of rat crry determined by solution scattering, curve fitting and homology modelling
  Author: m. aslam, j. m. guthridge, b. k. hack, r. j. quigg, v. m. holers, s. j. perkins
  Keywords: complement, glycoprotein, repeat, scr, ccp
  
• 1suj.pdb. signaling protein 26-mar-04 1suj
  Title: x-ray crystal structure of ambystoma tigrinum cone arrestin
  Author: r. b. sutton, j. v. navarro
  Keywords: signaling protein
  
• 1th5.pdb. structural genomics, unknown function 01-jun-04 1th5 He Hg (NMR, 20 structures)
  Title: solution structure of c-terminal domain of nifu-like protein from oryza sativa
  Author: h. kumeta, k. ogura, m. asayama, s. katoh, e. katoh, f. inagaki
  Keywords: structural genomics, program for rice genome research, structural genomics
  
• 2be9.pdb. transferase 23-oct-05 2be9 Zn
  Title: crystal structure of the ctp-liganded (t-state) aspartate transcarbamoylase from the extremely thermophilic archaeon sulfolobus acidocaldarius
  Author: d. de vos, s. n. savvides, j. van beeumen
  Keywords: hyperthermophilic, temperature, transferase, allosteric, holoenzyme, ctp complex
  
• 2d3y.pdb. hydrolase 04-oct-05 2d3y Fe
  Title: crystal structure of uracil-dna glycosylase from thermus thermophilus hb8
  Author: h. kosaka, n. nakagawa, r. masui, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: rsgi
  
• 2ddg.pdb. hydrolase/dna 28-jan-06 2ddg Fe
  Title: crystal structure of uracil-dna glycosylase in complex with ap:g containing dna
  Author: h. kosaka, n. nakagawa, r. masui, j. hoseki, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: riken structural genomics/proteomics initiative, rsgi
  
• 2dem.pdb. hydrolase/dna 13-feb-06 2dem Fe
  Title: crystal structure of uracil-dna glycosylase in complex with ap:a containing dna
  Author: h. kosaka, n. nakagawa, r. masui, j. hoseki, s. kuramitsu, riken structural genomics/proteomics initiative (rsgi)
  Keywords: rsgi
  
• 2du3.pdb. ligase/rna 20-jul-06 2du3
  Title: crystal structure of archaeoglobus fulgidus o-phosphoseryl- trna synthetase complexed with trnacys and o-phosphoserine
  Author: r. fukunaga
  
  
• 2du4.pdb. ligase/rna 20-jul-06 2du4
  Title: crystal structure of archaeoglobus fulgidus o-phosphoseryl- trna synthetase complexed with trnacys
  Author: r. fukunaga
  
  
• 2du5.pdb. ligase/rna 20-jul-06 2du5
  Title: crystal structure of archaeoglobus fulgidus o-phosphoseryl- trna synthetase e418n/e420n mutant complexed with trnaopal and o-phosphoserine ("opal complex")
  Author: r. fukunaga
  
  
• 2du6.pdb. ligase/rna 20-jul-06 2du6
  Title: crystal structure of archaeoglobus fulgidus o-phosphoseryl- trna synthetase e418n/e420n mutant complexed with trnaamber and o-phosphoserine ("amber complex")
  Author: r. fukunaga
  
  
• 2du7.pdb. ligase 20-jul-06 2du7
  Title: crystal structure of methanococcus jannacshii o- phosphoseryl-trna synthetase
  Author: r. fukunaga, riken structural genomics/proteomics initiative (rsgi)
  Keywords: ligase, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2dx7.pdb. isomerase 24-aug-06 2dx7
  Title: crystal structure of pyrococcus horikoshii ot3 aspartate racemase complex with citric acid
  Author: a. ohtaki, t. arakawa, r. iizuka, m. odaka, m. yohda
  Keywords: isomerase
  
• 2e67.pdb. structural genomics, unknown function 26-dec-06 2e67 Mg
  Title: crystal structure of the hypothetical protein tthb029 from thermus thermophilus hb8
  Author: t. imagawa, riken structural genomics/proteomics initiative (rsgi)
  Keywords: hypothetical protein, nppsfa, national project on protein structural and functional analyses, structural genomics, unknown function, riken structural genomics/proteomics initiative, rsgi
  
• 2ehq.pdb. oxidoreductase 07-mar-07 2ehq Na
  Title: crystal analysis of 1-pyrroline-5-carboxylate dehydrogenase from thermus with bound nadp
  Author: e. inagaki, k. sakamoto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 2ers.pdb. signaling protein 25-oct-05 2ers Hg (NMR, minimized average structure)
  Title: solution structure of the interleukin-15 receptor sushi domain
  Author: i. lorenzen, a. j. dingley, j. grotzinger
  
  
• 2erv.pdb. membrane protein 25-oct-05 2erv Ca
  Title: crystal structure of the outer membrane enzyme pagl
  Author: l. rutten, j. geurtsen, w. lambert, j. j. m. smolenaers, a. m. bonvin, p. van der ley, m. r. egmond, p. gros, j. tommassen
  Keywords: outer membrane, enzyme, hydrolase, lipopolysaccharide
  
• 2exf.pdb. viral protein/dna 08-nov-05 2exf He Hg Ho Zn (NMR, 10 structures)
  Title: solution structure of the hiv-1 nucleocapsid (ncp7(12-55)) complexed with the dna (-) primer binding site
  Author: s. bourbigot, s. bouaziz, n. morellet
  Keywords: stem-loop, bulge, zinc-finger
  
• 2fea.pdb. hydrolase 15-dec-05 2fea Mg Zn Se
  Title: crystal structure of mtnx phosphatase from bacillus subtilis at 2.00 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, hydrolase
  
• 2h2q.pdb. oxidoreductase, transferase 19-may-06 2h2q
  Title: crystal structure of trypanosoma cruzi dihydrofolate reductase-thymidylate synthase
  Author: o. senkovich, n. schormann, d. chattopadhyay
  Keywords: oxidoreductase, transferase
  
• 2hqm.pdb. oxidoreductase 19-jul-06 2hqm
  Title: crystal structure of glutathione reductase glr1 from the yeast saccharomyces cerevisiae
  Author: j. yu, c. z. zhou
  
  
• 2hxc.pdb. oxidoreductase 03-aug-06 2hxc
  Title: crystal structure of the benzylamine complex of aromatic amine dehydrogenase in n-semiquinone form
  Author: a. roujeinikova, d. leys
  
  
• 2i7c.pdb. transferase 30-aug-06 2i7c
  Title: the crystal structure of spermidine synthase from p. falciparum in complex with adodato
  Author: w. qiu, a. dong, h. ren, h. wu, g. wasney, m. vedadi, j. lew, i. kozieradski, a. m. edwards, c. h. arrowsmith, j. weigelt, m. sundstrom, a. n. plotnikov, a. bochkarev, r. hui, structural genomics consortium (sgc)
  Keywords: spermidine synthase, structural genomics consortium, sgc
  
• 2iiz.pdb. structural genomics/unknown function 28-sep-06 2iiz Na Fe Se
  Title: crystal structure of putative melanin biosynthesis protein tyra with bound heme (np_716371.1) from shewanella oneidensis at 2.30 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative melanin biosynthesis protein tyra, structural genomics, psi-2, protein structure initiative, joint center for structural genomics, jcsg
  
• 2ij2.pdb. oxidoreductase 29-sep-06 2ij2 Fe
  Title: atomic structure of the heme domain of flavocytochrome p450- bm3
  Author: h. s. helen, d. leys
  Keywords: p450bm3, monoxygenase, heme binding protein, atomic resolution
  
• 2ij3.pdb. oxidoreductase 29-sep-06 2ij3 Fe
  Title: structure of the a264h mutant of cytochrome p450 bm3
  Author: h. s. toogood, d. leys
  Keywords: histidine ligation, cytochrome p450, p450 bm3
  
• 2ij4.pdb. oxidoreductase 29-sep-06 2ij4 Fe
  Title: structure of the a264k mutant of cytochrome p450 bm3
  Author: h. s. toogood, d. leys
  Keywords: cytochrome p450, p450 bm3
  
• 2jmu.pdb. hydrolase 05-dec-06 2jmu He Hg (NMR, 20 structures)
  Title: nmr structure of the mouse thiamine triphosphatase
  Author: j. song, j. l. markley, center for eukaryotic structural genomics (cesg)
  Keywords: structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
  
• 2jn6.pdb. structural genomics, unknown function 28-dec-06 2jn6 He Hg (NMR, 20 structures)
  Title: solution nmr structure of protein cgl2762 from corynebacterium glutamicum: northeast structural genomics consortium target cgr3
  Author: k. k. singarapu, d. sukumaran, d. parish, c. x. chen, k. cunningham, r. xiao, g. v. t. swapna, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
  Keywords: psi-2, protein structure, structural genomics, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2k3m.pdb. membrane protein 14-may-08 2k3m He Hg (solution NMR)
  Title: rv1761c
  Author: r. c. page, j. d. moore, s. lee, s. j. opella, t. a. cross
  Keywords: integral membrane protein
  
• 2kae.pdb. transcription/dna 04-nov-08 2kae He Hg Ho Zn (solution NMR)
  Title: data-driven model of med1:dna complex
  Author: j. a. lowry, r. gamsjaeger, s. thong, w. hung, a. h. kwan, g. broitman- maduro, j. m. matthews, m. maduro, j. p. mackay
  Keywords: gata-type, dna, transcription factor, metal- binding, zinc, zinc-finger, transcription/dna complex
  
• 2kav.pdb. transport protein regulator 15-nov-08 2kav He Hg (solution NMR)
  Title: solution structure of the human voltage-gated sodium channel, brain isoform (nav1.2)
  Author: v. z. miloushev, j. a. levine, m. a. arbing, j. f. hunt, g. s. pitt, a. g. palmer
  Keywords: ubl conjugation, voltage-gated channel, transport protein, transport protein regulator
  
• 2kcl.pdb. structural genomics, unknown function 22-dec-08 2kcl He Hg (solution NMR)
  Title: solution nmr structure of tetratricopeptide repeat domain protein sru_0103 from salinibacter ruber, northeast structural genomics consortium (nesg) target srr115c
  Author: g. liu, p. rossi, d. wang, c. nwosu, l. owens, r. xiao, j. liu, m. c. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, northeast structural genomics consortium (nesg)
  Keywords: tpr, nesg, gft nmr, structural genomics, unknown function, psi-2, protein structure initiative, northeast structural genomics consortium
  
• 2oc8.pdb. viral protein 20-dec-06 2oc8 Zn
  Title: structure of hepatitis c viral ns3 protease domain complexed with ns4a peptide and ketoamide sch503034
  Author: a. j. prongay, z. guo, n. yao, t. fischmann, c. strickland, j. myers, jr. , p. c. weber, b. malcolm, b. m. beyer, r. ingram, j. pichardo, z. hong, w. w. prosise, l. ramanathan, s. s. taremi, t. yarosh-tomaine, r. zhang, m. senior, r. yang, a. arasappan, f. bennett, s. f. bogen, k. chen, e. jao, y. liu, r. g. love, a. k. saksena, s. venkatraman, v. girijavallabhan, f. g. njoroge, v. madison
  Keywords: hcv, ns3 protease domain, ketoamide inhibitor, viral protein
  
• 2okg.pdb. transcription 16-jan-07 2okg Cl Se
  Title: structure of effector binding domain of central glycolytic gene regulator (cggr) from b. subtilis
  Author: p. rezacova, s. f. moy, a. joachimiak, z. otwinowski, midwest center for structural genomics (mcsg)
  Keywords: rossmann-like fold, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
  
• 2pqa.pdb. replication 01-may-07 2pqa
  Title: crystal structure of full-length human rpa 14/32 heterodimer
  Author: x. deng, g. borgstahl
  Keywords: replication
  
• 2q6p.pdb. luminescent protein 05-jun-07 2q6p F
  Title: the chemical control of protein folding: engineering a superfolder green fluorescent protein
  Author: t. steiner, p. hess, j. h. bae, b. wiltschi, l. moroder, n. budisa
  Keywords: noncanonical amino acid, superfolder
  
• 2qhx.pdb. oxidoreductase 03-jul-07 2qhx I
  Title: structure of pteridine reductase from leishmania major complexed with a ligand
  Author: f. gibellini, k. mcluskey, l. b. tulloch, w. n. hunter
  Keywords: short-chain dehydrogenase/reductase, pteridine reductase, trypanosomatid, pterin salvage, drug resistance, methotrexate resistance, enzyme inhibitor, nadp/nadph
  
• 2qjl.pdb. signaling protein 07-jul-07 2qjl Mg
  Title: crystal structure of urm1
  Author: j. yu, c. -z. zhou
  
  
• 2zij.pdb. hydrolase 18-feb-08 2zij Na
  Title: crystal structure of human lysozyme expressed in e. coli.
  Author: t. tamada, r. kuroki, t. koshiba
  Keywords: refolded protein, amyloid, antimicrobial, bacteriolytic enzyme, disease mutation, glycosidase, polymorphism
  
• 2zik.pdb. hydrolase 18-feb-08 2zik Na
  Title: crystal structure of human lysozyme from pichia pastoris
  Author: t. tamada, r. kuroki, t. koshiba
  Keywords: secreted protein from pichia pastoris, amyloid, antimicrobial, bacteriolytic enzyme, disease mutation, glycosidase, polymorphism
  
• 2zil.pdb. hydrolase 18-feb-08 2zil Na
  Title: crystal structure of human lysozyme from urine
  Author: t. tamada, r. kuroki, t. koshiba
  Keywords: secreted protein from urine, amyloid, antimicrobial, bacteriolytic enzyme, disease mutation, glycosidase, polymorphism
  
• 2zjg.pdb. transferase 07-mar-08 2zjg
  Title: crystal structural of mouse kynurenine aminotransferase iii
  Author: q. han, t. cai, d. a. tagle, h. robinson, j. li
  Keywords: plp dependent protein, alternative splicing, aminotransferase, lyase, pyridoxal phosphate, transferase
  
• 2zvj.pdb. transferase 07-nov-08 2zvj Mg
  Title: crystal structures of rat catechol-o-methyltransferase complexed with coumarine-based inhibitor
  Author: e. tsuji
  Keywords: signal-anchor, transmembrane
  
• 3bqv.pdb. electron transport 20-dec-07 3bqv Cu
  Title: crystal structure of the double mutant d44a d45a plastocyanin from phormidium laminosum
  Author: r. fromme, y. s. bukhman-deruyter, h. mi, p. fromme
  Keywords: electron transport, photosystem 1, copper, metal-binding
  
• 3bxe.pdb. gene regulation 13-jan-08 3bxe
  Title: crystal structure of effector binding domain of central glycolytic gene regulator (cggr) from bacillus subtilis in complex with dihydroxyacetone phosphate
  Author: p. rezacova, z. otwinowski
  Keywords: catabolic repressor, transcriptional regulator, deor family, dna-binding, transcription regulation, gene regulation
  
• 3bxf.pdb. gene regulation 13-jan-08 3bxf Cl
  Title: crystal structure of effector binding domain of central glycolytic gene regulator (cggr) from bacillus subtilis in complex with effector fructose-1,6-bisphosphate
  Author: p. rezacova, z. otwinowski
  Keywords: catabolic repressor, transcriptional regulator, deor family, dna-binding, transcription regulation, gene regulation
  
• 3bxg.pdb. gene regulation 13-jan-08 3bxg
  Title: crystal structure of effector binding domain of central glycolytic gene regulator (cggr) from bacillus subtilis in complex with glucose-6-phosphate
  Author: p. rezacova, z. otwinowski
  Keywords: catabolic repressor, transcriptional regulator, deor family, dna-binding, transcription regulation, gene regulation
  
• 3bxh.pdb. gene regulation 13-jan-08 3bxh
  Title: crystal structure of effector binding domain of central glycolytic gene regulator (cggr) from bacillus subtilis in complex with fructose-6-phosphate
  Author: p. rezacova, z. otwinowski
  Keywords: catabolic repressor, transcriptional regulator, deor family, dna-binding, transcription regulation, gene regulation
  
• 3c1d.pdb. recombination, dna binding protein 23-jan-08 3c1d
  Title: x-ray crystal structure of recx
  Author: s. ragone, j. d. maman, n. furnham, l. pellegrini
  Keywords: helix-turn-helix, cytoplasm, dna damage, dna repair, sos response, dna binding protein, recombination
  
• 3c9k.pdb. dna binding protein 16-feb-08 3c9k (electron microscopy)
  Title: model of histone octamer tubular crystals
  Author: t. d. frouws
  Keywords: tubular crystal, chromosomal protein, nucleosome core, nucleus, acetylation, phosphoprotein, ubl conjugation, methylation, dna binding protein
  
• 3cg8.pdb. oxidoreductase 05-mar-08 3cg8 Cu
  Title: laccase from streptomyces coelicolor
  Author: t. skalova, j. dohnalek, l. h. ostergaard, p. r. ostergaard, p. kolenko, j. duskova, j. hasek
  Keywords: oxidoreductase, multicopper blue protein
  
• 3chj.pdb. metal binding protein 10-mar-08 3chj Ca
  Title: crystal structure of alpha-14 giardin
  Author: p. pathuri, h. luecke
  Keywords: annexin, metal binding protein
  
• 3chk.pdb. metal binding protein 10-mar-08 3chk Ca
  Title: calcium bound structure of alpha-14 giardin
  Author: p. pathuri, h. luecke
  Keywords: annexin, metal binding protein
  
• 3chl.pdb. metal binding protein 10-mar-08 3chl Mg
  Title: crystal structure of alpha-14 giardin with magnesium bound
  Author: p. pathuri, h. luecke
  Keywords: annexin, metal binding protein
  
• 3cl9.pdb. oxidoreductase, transferase 18-mar-08 3cl9 Cl
  Title: structure of bifunctional tcdhfr-ts in complex with mtx
  Author: n. schormann, o. senkovich, d. chattopadhyay
  Keywords: mtx and dump, methyltransferase, multifunctional enzyme, nucleotide biosynthesis, one-carbon metabolism, oxidoreductase, transferase, oxidoreductase/transferase complex
  
• 3clb.pdb. oxidoreductase, transferase 18-mar-08 3clb
  Title: structure of bifunctional tcdhfr-ts in complex with tmq
  Author: n. schormann, o. senkovich, d. chattopadhyay
  Keywords: oxidoreductase/transferase complex, oxidoreductase, transferase
  
• 3cw2.pdb. translation 21-apr-08 3cw2
  Title: crystal structure of the intact archaeal translation initiation factor 2 from sulfolobus solfataricus .
  Author: e. a. stolboushkina, s. v. nikonov, a. d nikulin, u blaesi, d. j. manstein, r. v. fedorov, m. b. garber, o. s. nikonov
  Keywords: gtp-binding, nucleotide- binding
  
• 3d2m.pdb. transferase 08-may-08 3d2m
  Title: crystal structure of n-acetylglutamate synthase from neisseria gonorrhoeae complexed with coenzyme a and l- glutamate
  Author: d. shi, l. min, z. jin, n. m. allewell, m. tuchman
  Keywords: transferase
  
• 3d2p.pdb. transferase 08-may-08 3d2p
  Title: crystal structure of n-acetylglutamate synthase from neisseria gonorrhoeae complexed with coenzyme a and l- arginine
  Author: d. shi, l. min, z. jin, n. m. allewell, m. tuchman
  Keywords: transferase
  
• 3d4w.pdb. hydrolase 15-may-08 3d4w
  Title: crystal structure of staphylococcal nuclease variant delta+phs a109r at cryogenic temperature
  Author: m. j. harms, j. l. schlessman, e. b. garcia-moreno
  Keywords: hyperstable variant, hydrolase, internal arg, calcium, endonuclease, metal-binding, secreted, zymogen
  
• 3d8g.pdb. hydrolase 23-may-08 3d8g Ca
  Title: crystal structure of staphylococcal nuclease variant delta+phs i72r at cryogenic temperature
  Author: m. j. harms, j. l. schlessman, e. b. garcia-moreno
  Keywords: hyperstable variant, hydrolase, internal arg, calcium, endonuclease, metal-binding, nuclease, secreted, zymogen
  
• 3da6.pdb. transferase 28-may-08 3da6
  Title: crystal structure of human jnk3 complexed with n-(3-methyl- 4-(3-(2-(methylamino)pyrimidin-4-yl)pyridin-2-yloxy) naphthalen-1-yl)-1h-benzo[d]imidazol-2-amine
  Author: v. j. cee, a. c. cheng, k. romero, s. bellon, c. mohr, d. a. whittington, j. bready, s. caenepeel, a. coxon, h. l. deak, b. l. hodous, j. l. kim, j. lin, h. nguyen, p. r. olivieri, v. f. patel, l. wang, p. hughes, s. geuns-meyer
  Keywords: kinase, alternative splicing, atp-binding, chromosomal rearrangement, cytoplasm, epilepsy, nucleotide- binding, phosphoprotein, serine/threonine-protein kinase, transferase
  
• 3dcn.pdb. hydrolase 04-jun-08 3dcn
  Title: glomerella cingulata apo cutinase
  Author: m. p. nyon, d. w. rice, j. m. berrisford, a. m. hounslow, a. j. g. moir, h. huang, s. nathan, n. m. mahadi, a. b. farah diba, c. j. craven
  Keywords: cutinase, catalytic triad, hydrolase, secreted, serine esterase
  
• 3dd5.pdb. hydrolase 05-jun-08 3dd5
  Title: glomerella cingulata e600-cutinase complex
  Author: m. p. nyon, d. w. rice, j. m. berrisford, a. m. hounslow, a. j. g. moir, h. huang, s. nathan, n. m. mahadi, a. b. farah diba, c. j. craven
  Keywords: hydrolase, secreted, serine esterase
  
• 3dea.pdb. hydrolase 09-jun-08 3dea F
  Title: glomerella cingulata petfp-cutinase complex
  Author: m. p. nyon, d. w. rice, j. m. berrisford, a. m. hounslow, a. j. g. moir, h. huang, s. nathan, n. m. mahadi, a. b. farah diba, c. j. craven
  Keywords: hydrolase, secreted, serine esterase
  
• 3dhq.pdb. hydrolase 18-jun-08 3dhq Ca
  Title: crystal structure of staphylococcal nuclease variant delta+phs a90r at cryogenic temperature
  Author: m. j. harms, j. l. schlessman, e. b. garcia-moreno
  Keywords: hyperstable variant, hydrolase, internal arg, calcium, endonuclease, membrane, metal- binding, nuclease, secreted, zymogen
  
• 3duf.pdb. oxidoreductase/transferase 17-jul-08 3duf Mg K
  Title: snapshots of catalysis in the e1 subunit of the pyruvate dehydrogenase multi-enzyme complex
  Author: x. y. pei, c. m. titman, r. a. w. frank, f. j. leeper, b. f. luisi
  Keywords: pyruvate, dehydrogenase, dihydrolipoyl, acetyl transferase, multienzyme complex, transferase, glycolysis, phosphoprotein, thiamine pyrophosphate, acyltransferase, oxidoreductase/transferase complex
  
• 3e2b.pdb. transport protein 05-aug-08 3e2b
  Title: crystal structure of dynein light chain lc8 in complex with a peptide derived from swallow
  Author: g. benison, e. barbar, p. a. karplus
  Keywords: transport protein, cytoplasm, dynein, microtubule, motor protein
  
• 3e62.pdb. transferase 14-aug-08 3e62 Br
  Title: fragment based discovery of jak-2 inhibitors
  Author: f. park
  Keywords: tyrosine-protein kinase
  
• 3e63.pdb. transferase 14-aug-08 3e63
  Title: fragment based discovery of jak-2 inhibitors
  Author: s. s. antonysamy
  Keywords: tyrosine-protein kinase
  
• 3e64.pdb. transferase 14-aug-08 3e64
  Title: fragment based discovery of jak-2 inhibitors
  Author: s. s. antonysamy
  Keywords: tyrosine-protein kinase
  
• 3ee5.pdb. transferase 04-sep-08 3ee5 Mn
  Title: crystal structure of human m340h-beta1,4- galactosyltransferase-i (m340h-b4gal-t1) in complex with glcnac-beta1,3-gal-beta-naphthalenemethanol
  Author: b. ramakrishnan, p. k. qasba
  Keywords: secreted, signal-anchor, transferase, transmembrane
  
• 3ekk.pdb. transferase 19-sep-08 3ekk F
  Title: insulin receptor kinase complexed with an inhibitor
  Author: s. chamberlain, c. atkins, f. deanda, m. dumble, r. gerding, a. groy, s. korenchuk, r. kumar, h. lei, r. mook, g. moorthy, a. redman, j. rowland, p. sabbatini, l. shewchuk
  Keywords: phosphoprotein, polymorphism, receptor, transferase, transmembrane, tyrosine-protein kinase
  
• 3ekn.pdb. transferase 19-sep-08 3ekn F
  Title: insulin receptor kinase complexed with an inhibitor
  Author: s. chamberlain, c. atkins, f. deanda, m. dumble, r. gerding, a. groy, s. korenchuk, r. kumar, h. lei, r. mook, g. moorthy, a. redman, j. rowland, l. shewchuk
  Keywords: phosphoprotein, polymorphism, receptor, transferase, transmembrane, tyrosine-protein kinase
  
• 3eld.pdb. transferase 22-sep-08 3eld
  Title: wesselsbron methyltransferase in complex with sinefungin
  Author: m. bollati, m. milani, e. mastrangelo, s. ricagno, m. bolognesi
  Keywords: rna capping, methyltransferase, guanylyltransferase, viral enzyme structure
  
• 3elj.pdb. transferase 22-sep-08 3elj F
  Title: jnk1 complexed with a bis-anilino-pyrrolopyrimidine inhibitor.
  Author: s. chamberlain, c. atkins, f. deanda, m. dumble, r. gerding, a. groy, s. korenchuk, r. kumar, h. lei, r. mook, g. moorthy, a. redman, j. rowland, l. shewchuk, g. vicentini, j. mosley
  Keywords: mitogen-activated protein kinase, alternative splicing, atp-binding, kinase, nucleotide- binding, phosphoprotein, polymorphism, serine/threonine- protein kinase, transferase, jnk1
  
• 3elu.pdb. transferase 23-sep-08 3elu
  Title: wesselsbron virus methyltransferase in complex with adomet
  Author: m. bollati, s. ricagno, m. milani, e. mastrangelo, m. bolognesi
  Keywords: rna capping, methyltransferase, guanylyltransferase, viral enzyme structure
  
• 3elw.pdb. transferase 23-sep-08 3elw
  Title: wesselsbron virus methyltransferase in complex with adomet and gpppg
  Author: m. bollati, s. ricagno, m. milani, e. mastrangelo, m. bolognesi
  Keywords: rna capping, methyltransferase, guanylyltransferase, viral enzyme structure
  
• 3ely.pdb. transferase 23-sep-08 3ely
  Title: wesselsbron virus methyltransferase in complex with adohcy
  Author: m. bollati, m. milani, s. ricagno, e. mastrangelo, m. bolognesi
  Keywords: rna capping, methyltransferase, guanylyltransferase, viral enzyme structure
  
• 3emb.pdb. transferase 24-sep-08 3emb
  Title: wesselsbron virus methyltransferase in complex with adomet and 7megpppg
  Author: m. bollati, s. ricagno, m. milani, e. mastrangelo, m. bolognesi
  Keywords: rna capping, methyltransferase, guanylyltransferase, viral enzyme structure
  
• 3emd.pdb. transferase 24-sep-08 3emd
  Title: wesselsbron virus methyltransferase in complex with sinefungin and 7megpppa
  Author: m. bollati, m. milani, s. ricagno, e. mastrangelo, m. bolognesi
  Keywords: rna capping, methyltransferase, guanylyltransferase, viral enzyme structure
  
• 3eo0.pdb. immune system 26-sep-08 3eo0
  Title: structure of the transforming growth factor-beta neutralizing antibody gc-1008
  Author: c. gruetter, m. g. gruetter
  Keywords: fab fragment, immune system
  
• 3eo1.pdb. immune system/cytokine 26-sep-08 3eo1
  Title: structure of the fab fragment of gc-1008 in complex with transforming growth factor-beta 3
  Author: c. gruetter, m. g. gruetter
  Keywords: growth factor, fab fragment, cardiomyopathy, cleavage on pair of basic residues, glycoprotein, mitogen, polymorphism, secreted, immune system/cytokine complex
  
• 3ep2.pdb. ribosomal protein/rna 29-sep-08 3ep2 (cryo-electron microscopy)
  Title: model of phe-trna(phe) in the ribosomal pre-accommodated state revealed by cryo-em
  Author: j. frank, w. li, x. agirrezabala
  Keywords: protein biosynthesis, ribonucleoprotein, ribosomal protein, rna- binding, rrna-binding, trna-binding, ribosomal protein/rna complex
  
• 3ept.pdb. oxidoreductase 30-sep-08 3ept Na
  Title: structure of the rebeccamycin biosynthetic enzyme rebc with reduced flavin
  Author: k. s. ryan, c. l. drennan
  Keywords: monooxygenase, oxidoreductase
  
• 3eq3.pdb. ribosomal protein/rna 30-sep-08 3eq3 (cryo-electron microscopy)
  Title: model of trna(trp)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-em
  Author: j. frank, w. li, x. agirrezabala
  Keywords: protein biosynthesis, ribonucleoprotein, ribosomal protein, rna- binding, rrna-binding, trna-binding, ribosomal protein/rna complex
  
• 3eq4.pdb. ribosomal protein/rna 30-sep-08 3eq4 (cryo-electron microscopy)
  Title: model of trna(leu)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-em
  Author: j. frank, w. li, x. agirrezabala
  Keywords: protein biosynthesis, ribonucleoprotein, ribosomal protein, rna- binding, rrna-binding, trna-binding, ribosomal protein/rna complex
  
• 3eva.pdb. transferase 13-oct-08 3eva
  Title: crystal structure of yellow fever virus methyltransferase complexed with s-adenosyl-l-homocysteine
  Author: a. a. thompson, b. j. geiss, o. b. peersen
  Keywords: secreted, serine protease, transmembrane, viral nucleoprotein, virion
  
• 3evb.pdb. transferase 13-oct-08 3evb
  Title: crystal structure of yellow fever virus methyltransferase complexed with s-adenosyl-l-homocysteine
  Author: a. a. thompson, b. j. geiss, o. b. peersen
  Keywords: secreted, serine protease, transmembrane, viral nucleoprotein, virion
  
• 3evc.pdb. transferase 13-oct-08 3evc
  Title: crystal structure of gtp complex of yellow fever virus methyltransferase and s-adenosyl-l-homocysteine
  Author: a. a. thompson, b. j. geiss, o. b. peersen
  Keywords: secreted, serine protease, transmembrane, viral nucleoprotein, virion
  
• 3evd.pdb. transferase 13-oct-08 3evd
  Title: crystal structure of gtp complex of yellow fever virus methyltransferase and s-adenosyl-l-homocysteine
  Author: a. a. thompson, b. j. geiss, o. b. peersen
  Keywords: secreted, serine protease, transmembrane, viral nucleoprotein, virion
  
• 3eve.pdb. transferase 13-oct-08 3eve
  Title: crystal structure of gpppa complex of yellow fever virus methyltransferase and s-adenosyl-l-homocysteine
  Author: a. a. thompson
  Keywords: secreted, serine protease, transmembrane, viral nucleoprotein, virion
  
• 3evf.pdb. transferase 13-oct-08 3evf
  Title: crystal structure of me7-gpppa complex of yellow fever virus methyltransferase and s-adenosyl-l-homocysteine
  Author: a. a. thompson, b. j. geiss, o. b. peersen
  Keywords: secreted, serine protease, transmembrane, viral nucleoprotein, virion
  
• 3evg.pdb. transferase 13-oct-08 3evg
  Title: crystal structure of dengue-2 virus methyltransferase complexed with s-adenosyl-l-homocysteine
  Author: a. a. thompson, b. j. geiss, o. b. peersen
  Keywords: rna- directed rna polymerase, secreted, serine protease, transcription, transcription regulation, transmembrane, viral nucleoprotein, virion
  
• 3exn.pdb. transferase 16-oct-08 3exn Cl Se
  Title: crystal structure of acetyltransferase from thermus thermophilus hb8
  Author: b. nocek, c. hatzos, s. clancy, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: gcn5-related n-acetyltransferase, mcsg, psi, structural genomics, protein structure initiative, midwest center for structural genomics, transferase
  
• 3f5p.pdb. transferase 04-nov-08 3f5p Cl
  Title: complex structure of insulin-like growth factor receptor and 3-cyanoquinoline inhibitor
  Author: w. xu, l. m. miller, s. c. mayer, d. m. berger, d. h. boschelli, f. boschelli
  Keywords: transferase, transmembrane, tyrosine-protein kinase
  
• 3f62.pdb. cytokine 05-nov-08 3f62
  Title: crystal structure of human il-18 in complex with ectromelia virus il-18 binding protein
  Author: b. e. krumm, y. li, j. deng
  Keywords: il-18, beta trefoil, cytokine, secreted
  
• 3f66.pdb. transferase 05-nov-08 3f66 F Na
  Title: human c-met kinase in complex with quinoxaline inhibitor
  Author: c. meier, t. ceska
  Keywords: alternative splicing; atp-binding; chromosomal rearrangement; disease mutation; glycoprotein; kinase; membrane; nucleotide-binding; phosphoprotein; polymorphism; proto-oncogene; receptor; repeat; sig...
  
• 3f70.pdb. transcription regulator 07-nov-08 3f70
  Title: crystal structure of l3mbtl2-h4k20me1 complex
  Author: y. guo, c. qi, a. allali-hassani, p. pan, h. zhu, a. dong, f. mackenzie, l. crombet, p. loppnau, i. kozieradzki, m. vedadi, a. m. edwards, j. weigelt, c. bountra, c. h. arrowsmith, a. botchkarev, r. read, j. min, structural genomics consortium (sgc)
  Keywords: alternative splicing, phosphoprotein
  
• 3f8i.pdb. ligase/dna 12-nov-08 3f8i
  Title: mouse uhrf1 sra domain bound with hemi-methylated cpg, crystal structure in space group p21
  Author: h. hashimoto, j. r. horton, x. zhang, x. cheng
  Keywords: transcription regulation, ubl conjugation, ubl conjugation pathway, zinc, zinc-finger, ligase/dna complex
  
• 3f8j.pdb. ligase/dna 12-nov-08 3f8j
  Title: mouse uhrf1 sra domain bound with hemi-methylated cpg, crystal structure in space group c222(1)
  Author: h. hashimoto, j. r. horton, x. zhang, x. cheng
  Keywords: transcription regulation, ubl conjugation, ubl conjugation pathway, zinc, zinc-finger, ligase/dna complex
  
• 3f9v.pdb. hydrolase 14-nov-08 3f9v
  Title: crystal structure of a near full-length archaeal mcm: functional insights for an aaa+ hexameric helicase
  Author: x. j. chen, a. s. brewster, g. g. wang, x. yu, w. greenleaf, m. tjajadi, m. klein
  Keywords: dna replication, mcm complex, crystal structure, aaa+ protein, atp-binding, dna-binding, helicase, hydrolase, nucleotide-binding
  
• 3fcz.pdb. hydrolase 24-nov-08 3fcz Zn
  Title: adaptive protein evolution grants organismal fitness by improving catalysis and flexibility
  Author: p. tomatis, s. fabiane, f. simona, p. carloni, b. sutton, a. vila
  Keywords: antibiotic resistance, hydrolase, metal-binding, zinc
  
• 3fde.pdb. ligase 25-nov-08 3fde Na
  Title: mouse uhrf1 sra domain bound with hemi-methylated cpg dna, crystal structure in space group c222(1) at 1.4 a resolution
  Author: h. hashimoto, j. r. horton, x. zhang, x. cheng
  Keywords: ubl conjugation, ubl conjugation pathway, zinc, zinc-finger
  
• 3fdf.pdb. structural genomics, unknown function 25-nov-08 3fdf Se
  Title: crystal structure of the serine phosphatase of rna polymerase ii ctd (ssu72 superfamily) from drosophila melanogaster. orthorhombic crystal form. northeast structural genomics consortium target fr253.
  Author: a. p. kuzin, y. chen, j. seetharaman, f. forouhar, y. chinag, y. fang, k. cunningham, l. -c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
  
• 3fdr.pdb. rna binding protein 26-nov-08 3fdr
  Title: crystal structure of tdrd2
  Author: m. f amaya, m. a. adams, y. guo, y. li, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. bochkarev, j. min, structural genomics consortium (sgc)
  Keywords: tudor, structural genomics, structural genomics consortium, sgc, alternative splicing, rna-binding, rna binding protein
  
• 3feo.pdb. metal binding protein 30-nov-08 3feo
  Title: the crystal structure of mbtd1
  Author: m. f. amaya, j. eryilmaz, i. kozieradzki, a. m. edwards, c. h. arrowsmith, j. weigelt, c. bountra, a. bochkarev, j. min, structural genomics consortium (sgc)
  Keywords: structural genomics, structural genomics consortium, sgc, alternative splicing, metal-binding, nucleus, zinc, zinc-finger, metal binding protein
  
• 3fer.pdb. actin binding protein 30-nov-08 3fer Se
  Title: crystal structure of n-terminal actin-binding domain from human filamin b (tandem ch-domains). northeast structural genomics consortium target hr5571a.
  Author: a. p. kuzin, m. abashidze, r. seetharaman, r. shastry, s. sahdev, c. ciccosanti, r. xiao, j. k. everett, y. huang, t. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
  Keywords: disease mutation, dwarfism, myogenesis, phosphoprotein, polymorphism, actin binding protein
  
• 3fgg.pdb. structural genomics, unknown function 05-dec-08 3fgg Zn Se
  Title: crystal structure of putative ecf-type sigma factor negative effector from bacillus cereus
  Author: y. kim, b. nocek, n. maltseva, g. joachimiak, j. du, r. jedrzejczak, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3fh3.pdb. structural genomics, unknown function 08-dec-08 3fh3 Ni Se
  Title: crystal structure of a putative ecf-type sigma factor negative effector from bacillus anthracis str. sterne
  Author: b. nocek, y. kim, g. joachimiak, j. du, p. gornicki, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: ecf-type sigma factor negative effector, mcsg, psi, structural genomics, protein structure initiative, midwest center for structural genomics, unknown function
  
• 3fhb.pdb. transferase 09-dec-08 3fhb
  Title: human poly(adp-ribose) polymerase 3, catalytic fragment in complex with an inhibitor 3-aminobenzoic acid
  Author: l. lehtio, t. karlberg, c. h. arrowsmith, h. berglund, r. busam, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, b. m. hallberg, i. johansson, t. kotenyova, m. moche, p. nordlund, t. nyman, d. ogg, c. persson, j. sagemark, h. schueler, p. stenmark, m. sundstrom, a. g. thorsell, s. van den berg, j. weigelt, l. holmberg-schiavone, structural genomics consortium (sgc)
  Keywords: enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, sgc, alternative splicing, glycosyltransferase, nad, nucleus
  
• 3fif.pdb. structural genomics, unknown function 11-dec-08 3fif Se
  Title: crystal structure of the ygdr protein from e.coli. northeast structural genomics target er382a.
  Author: a. p. kuzin, m. su, j. seetharaman, p. rossi, c. x. chen, m. jiang, k. cunningham, l. ma, r. xiao, j. c. liu, m. baran, g. v. t. swapna, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, cell membrane, lipoprotein, membrane, palmitate, unknown function
  
• 3fkq.pdb. structural genomics, unknown function 17-dec-08 3fkq Cl Mg Se
  Title: crystal structure of ntrc-like two-domain protein (rer070207001320) from eubacterium rectale at 2.10 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: ntrc-like two-domain protein, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3fkx.pdb. hydrolase 18-dec-08 3fkx Zn Fe
  Title: structure of the complex of c-terminal half (c-lobe) of bovine lactoferrin with alpha-methyl-4-(2-methylpropyl) benzene acetic acid
  Author: r. mir, g. vikram, m. sinha, n. singh, s. sharma, p. kaur, t. p. singh
  Keywords: complex, ibuprofen, c-lobe, antibiotic, antimicrobial, glycoprotein, hydrolase, ion transport, iron, iron transport, metal-binding, phosphoprotein, protease, secreted, serine protease, transport
  
• 3fla.pdb. hydrolase 18-dec-08 3fla Cl Se
  Title: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic pathway - form 1
  Author: j. l. smith, d. l. akey
  
  
• 3flb.pdb. hydrolase 18-dec-08 3flb Cl
  Title: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic pathway - form 2
  Author: j. l. smith, d. l. akey
  
  
• 3fmc.pdb. structural genomics, unknown function 19-dec-08 3fmc Se
  Title: crystal structure of putative succinylglutamate desuccinylase / aspartoacylase (yp_926482.1) from shewanella amazonensis sb2b at 1.80 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative succinylglutamate desuccinylase / aspartoacylase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3fme.pdb. transferase 21-dec-08 3fme
  Title: crystal structure of human mitogen-activated protein kinase kinase 6 (mek6) activated mutant (s207d, t211d)
  Author: p. filippakopoulos, a. barr, a. c. w. pike, g. berridge, j. elkins, o. fedorov, t. keates, p. savitsky, m. soundararajan, f. von delft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, s. knapp, structural genomics consortium (sgc)
  Keywords: tyrosine-protein kinase
  
• 3fmv.pdb. structural genomics, unknown function 22-dec-08 3fmv Se
  Title: crystal structure of the serine phosphatase of rna polymerase ii ctd (ssu72 superfamily) from drosophila melanogaster. monoclinic crystal form. northeast structural genomics consortium target fr253.
  Author: a. p. kuzin, y. chen, j. seetharaman, f. forouhar, y. chinag, y. fang, k. cunningham, l. -c. ma, r. xiao, j. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: ctd, serine phosphatase, nesg structure, drosophila melanogaster, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
  
• 3fn5.pdb. hydrolase 23-dec-08 3fn5
  Title: crystal structure of sortase a (spy1154) from streptococcus pyogenes serotype m1 strain sf370
  Author: m. j. banfield
  Keywords: hydrolase
  
• 3fn6.pdb. hydrolase 23-dec-08 3fn6
  Title: crystal structure of sortase a from streptococcus pyogenes serotype m1 strain sf370 with the active site cys in its sulphenic acid form
  Author: m. j. banfield
  Keywords: hydrolase
  
• 3fn7.pdb. hydrolase 23-dec-08 3fn7
  Title: crystal structure of sortase a (spy1154) from streptococcus pyogenes serotype m1 strain sf370
  Author: m. j. banfield
  Keywords: hydrolase
  
• 3fnb.pdb. hydrolase 23-dec-08 3fnb Mg Se
  Title: crystal structure of acylaminoacyl peptidase smu_737 from streptococcus mutans ua159
  Author: y. kim, c. hatzos, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: helix bundle, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, hydrolase
  
• 3fob.pdb. oxidoreductase 29-dec-08 3fob Cl Na Se
  Title: crystal structure of bromoperoxidase from bacillus anthracis
  Author: j. osipiuk, m. gu, j. stam, w. f. anderson, a. joachimiak, center for structural genomics of infectious diseases (csgid)
  Keywords: idp00046, bromoperoxidase, bacillus anthracis, peroxidase, oxidoreductase, center for structural genomics of infectious diseases, csgid