Recent PDB releases or updates: week of 26 December 2008
- 1f9y.pdb.
transferase 11-jul-00 1f9y
Cl Mg
Title: crystal structure of the ternary complex of e. coli hppk with mgampcpp and 6-hydroxymethylpterin
Author: j. blaszczyk, x. ji
Keywords: x- ray crystallography
- 1nq7.pdb.
transcription 21-jan-03 1nq7
Title: characterization of ligands for the orphan nuclear receptor rorbeta
Author: c. stehlin-gaon, d. willmann, s. sanglier, a. van dorsselaer, j. - p. renaud, d. moras, r. schuele
Keywords: retinoids, retinoic acid, synthetic ligand, antagonist
- 1r57.pdb.
transferase 09-oct-03 1r57
He Hg
(NMR, 20 structures)
Title: nmr solution structure of a gcn5-like putative n- acetyltransferase from staphylococcus aureus. northeast structural genomics consortium target zr31
Author: j. r. cort, t. b. acton, l. ma, r. b. xiao, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: n-acetyltransferase, structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 1tw9.pdb.
transferase 30-jun-04 1tw9
Title: glutathione transferase-2, apo form, from the nematode heligmosomoides polygyrus
Author: d. j. schuller, q. liu, i. a. kriksunov, a. m. campbell, j. barrett, p. m. brophy, q. hao
- 1xw6.pdb.
transferase 29-oct-04 1xw6
Title: 1.9 angstrom resolution structure of human glutathione s- transferase m1a-1a complexed with glutathione
Author: y. v. patskovsky, l. n. patskovska, s. c. almo, i. listowsky
Keywords: glutathione, conjugation, detoxification, cytosolic, dimer, active site
- 1xwk.pdb.
transferase 01-nov-04 1xwk
Title: 2.3 angstrom resolution crystal structure of human glutathione s-transferase m1a-1a complexed with glutathionyl-s-dinitrobenzene
Author: y. v. patskovsky, l. n. patskovska, s. c. almo, i. listowsky
Keywords: glutathione, conjugation, detoxification, cytosolic, dimer, active site, glutathionyl-s- dinitrobenzene, gs-dnb, 1-chloro-2,4-dinitrobenzene, cdnb
- 2a15.pdb.
unknown function 17-jun-05 2a15
Title: x-ray crystal structure of rv0760 from mycobacterium tuberculosis at 1.68 angstrom resolution
Author: c. r. garen, m. m. cherney, m. n. g. james, tb structural genomics consortium (tbsgc)
Keywords: structural genomics, psi, protein structure initiative, tb structural genomics consortium, tbsgc
- 2ayj.pdb.
translation 07-sep-05 2ayj
He Hg Zn
(NMR, 20 structures)
Title: solution structure of 50s ribosomal protein l40e from sulfolobus solfataricus
Author: b. wu, a. yee, j. lukin, a. lemak, a. semesi, t. ramelot, m. kennedy, a. edward, c. h. arrowsmith, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi, protein structure initiative, northeast structural genomics consortium, nesg
- 2di3.pdb.
transcription 28-mar-06 2di3
Zn
Title: crystal structure of the transcriptional factor cgl2915 from corynebacterium glutamicum
Author: y. g. gao, m. yao, i. tanaka
- 2gzu.pdb.
transcription regulator 12-may-06 2gzu
He Hg
(NMR, 15 structures)
Title: high-resolution structure determination of the cylr2 homodimer using intermonomer distances from paramagnetic relaxation enhancement and nmr dipolar couplings
Author: s. rumpel, s. becker, m. zweckstetter
- 2h5m.pdb.
transferase 26-may-06 2h5m
He Hg Ho
(NMR, 20 structures)
Title: nmr solution structure of a gcn5-like putative n- acetyltransferase from staphylococcus aureus complexed with acetyl-coa. northeast structural genomics consortium target zr31
Author: j. r. cort, t. a. ramelot, t. b. acton, l. ma, r. b. xiao, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
Keywords: n-acetyltransferase domain, structural genomics, psi- 2, protein structure initiative, northeast structural genomics consortium, nesg
- 2hm8.pdb.
apoptosis 11-jul-06 2hm8
He Hg
(NMR, 49 structures)
Title: solution structure of the c-terminal ma-3 domain of pdcd4
Author: l. c. waters, v. veverka, m. bohm, f. w. muskett, p. t. choong, k. h. klempnauer, m. d. carr
- 2hpg.pdb.
ligand binding protein 17-jul-06 2hpg
Se
Title: the crystal structure of a thermophilic trap periplasmic binding protein
Author: m. j. cuneo, h. w. hellinga
Keywords: thermophilic proteins, trap- transport
- 2jkr.pdb.
endocytosis 29-aug-08 2jkr
Title: ap2 clathrin adaptor core with dileucine peptide rm( phosphos)qikrllse
Author: d. j. owen, a. j. mccoy, b. t. kelly, p. r. evans
Keywords: phosphoprotein, phosphorylation, protein transport, adaptor, membrane, transport, coated pit, endocytosis, cell membrane, lipid-binding
- 2jkt.pdb.
endocytosis 29-aug-08 2jkt
Title: ap2 clathrin adaptor core with cd4 dileucine peptide rm( phosphos)eikrllse q to e mutant
Author: d. j. owen, a. j. mccoy, b. t. kelly, p. r. evans
Keywords: phosphoprotein, phosphorylation, protein transport, adaptor, membrane, transport, coated pit, endocytosis, cell membrane, lipid-binding
- 2jyz.pdb.
unknown function 21-dec-07 2jyz
He Hg
(solution NMR)
Title: cg7054 solution structure
Author: g. rautureau, l. jouvensal, f. vovelle, f. schoentgen, d. locker, m. decoville, c. damblon
Keywords: nmr, molecular modeling, chemical shift variations, titration, drosophila, unknown function
- 2k0l.pdb.
membrane protein 04-feb-08 2k0l
He Hg
(solution NMR)
Title: nmr structure of the transmembrane domain of the outer membrane protein a from klebsiella pneumoniae in dhpc micelles.
Author: m. renault, o. saurel, v. gervais, f. lohr, v. reat, m. piotto, a. milon
Keywords: membrane protein, trosy, sidechain, dhpc micelles
- 2k27.pdb.
transcription regulator 26-mar-08 2k27
He Hg
(solution NMR)
Title: solution structure of human pax8 paired box domain
Author: l. codutti, g. esposito, a. corazza, f. fogolari, g. tell, c. vascotto, h. van ingen, r. boelens, p. viglino, f. quadrifoglio
Keywords: polymorphism, transcription, transcription regulation, transcription regulator
- 2k2n.pdb.
transferase 04-apr-08 2k2n
He Hg
(solution NMR)
Title: solution structure of a cyanobacterial phytochrome gaf domain in the red light-absorbing ground state
Author: c. c. cornilescu, g. cornilescu, a. t. ulijasz, r. d. vierstra, j. l. markley
Keywords: gaf domain, phycocyanobilin, pcb, bacteriophytochrome, cyanobacterial phytochrome, kinase, phosphoprotein, transferase
- 2k6o.pdb.
antimicrobial protein 14-jul-08 2k6o
He Hg
(solution NMR)
Title: human ll-37 structure
Author: g. wang
Keywords: antimicrobial protein
- 2k9u.pdb.
structural protein 24-oct-08 2k9u
He Hg
(solution NMR)
Title: solution nmr structure of the filamin-migfilin complex
Author: s. n. ithychanda, j. qin
Keywords: alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton, lim domain, metal-binding, polymorphism, zinc, structural protein
- 2kbi.pdb.
metal binding protein 28-nov-08 2kbi
He Hg
(solution NMR)
Title: solution nmr structure of the c-terminal ef-hand domain of human cardiac sodium channel nav1.5
Author: b. chagot, f. potet, j. r. balser, w. j. chazin
Keywords: sodium transport, transmembrane, transport, ubl conjugation, voltage-gated channel, metal binding protein
- 2nz7.pdb.
apoptosis 22-nov-06 2nz7
Title: crystal structure analysis of caspase-recruitment domain (card) of nod1
Author: s. thiagarajan, s. l. robbins, r. l. dubas, y. c. park
Keywords: apoptosis
- 2o2c.pdb.
isomerase 29-nov-06 2o2c
Title: crystal structure of phosphoglucose isomerase from t. brucei containing glucose-6-phosphate in the active site
Author: d. arsenieva, g. h. mazock, b. l. appavu, c. j. jeffery
Keywords: isomerase
- 2o2d.pdb.
isomerase 29-nov-06 2o2d
Title: crystal structure of phosphoglucose isomerase from trypanosoma brucei complexed with citrate
Author: d. arsenieva, g. h. mazock, b. l. appavu, c. j. jeffery
Keywords: isomerase
- 2prh.pdb.
oxidoreductase 04-may-07 2prh
Cl F
Title: the structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site
Author: b. walse, v. t. dufe, s. al-karadaghi
Keywords: oxidoreductase
- 2prl.pdb.
oxidoreductase 04-may-07 2prl
Title: the structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site
Author: b. walse, v. t. dufe, s. al-karadaghi
Keywords: oxidoreductase
- 2prm.pdb.
oxidoreductase 04-may-07 2prm
Title: the structures of apo- and inhibitor bound human dihydroorotate dehydrogenase reveal conformational flexibility within the inhibitor binding site
Author: b. walse, v. t. dufe, s. al-karadaghi
Keywords: oxidoreductase
- 2qs9.pdb.
structural protein 30-jul-07 2qs9
Se
Title: crystal structure of the human retinoblastoma-binding protein 9 (rbbp-9). nesg target hr2978
Author: s. m. vorobiev, m. su, j. seetharaman, a. kuzin, c. x. chen, k. cunningham, l. owens, m. maglaqui, r. xiao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: alternative splicing, cytoplasm, nucleus, phosphorylation, structural protein
- 2quo.pdb.
toxin 06-aug-07 2quo
Title: crystal structure of c terminal fragment of clostridium perfringens enterotoxin
Author: l. betts, c. m. van itallie
Keywords: claudin-4 binding domain, enterotoxin, therapeutic agent
- 2r24.pdb.
oxidoreductase 24-aug-07 2r24
D F Br
(x-ray diffraction; neutron diffraction)
Title: human aldose reductase structure
Author: m. blakeley, f. ruiz, r. cachau, i. hazemann, f. meilleur, a. mitschler, s. ginell, p. afonine, o. n. ventura, a. cousido-siah, m. haertlein, a. joachimiak, d. myles, a. podjarny
Keywords: acetylation, cataract, cytoplasm, nadp, oxidoreductase, polymorphism
- 2rgv.pdb.
dna binding protein 05-oct-07 2rgv
Zn
Title: the crystal structure of perr-ox highlights 2-oxo-histidine formation
Author: d. a. k. traore
Keywords: perr-ox, cytoplasm, dna-binding, manganese, oxidation, repressor, transcription, transcription regulation, zinc, dna binding protein
- 2roz.pdb.
peptide binding protein 25-apr-08 2roz
He Hg
(NMR, 20 structures)
Title: structure of the c-terminal pid domain of fe65l1 complexed with the cytoplasmic tail of app reveals a novel peptide binding mode
Author: h. li, s. koshiba, n. tochio, s. watanabe, t. harada, m. inoue, t. kigawa, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi, peptide binding protein
- 2vmj.pdb.
oxidoreductase 28-jan-08 2vmj
Zn
Title: type 1 copper-binding loop of nitrite reductase mutant: 130- capegmvpwhvvsgm-144 to 130-ctphpfm-136
Author: k. sato, s. j. firbank, c. li, m. j. banfield, c. dennison
Keywords: type 1 copper, type 2 copper, electron transfer, loop-directed mutagenesis, copper-containing nitrite reductase, oxidoreductase
- 2vn3.pdb.
oxidoreductase 30-jan-08 2vn3
Cu Zn
Title: nitrite reductase from alcaligenes xylosoxidans
Author: k. sato, s. j. firbank, c. li, m. j. banfield, c. dennison
Keywords: type 1 copper, type 2 copper, oxidoreductase, electron transfer, copper-containing nitrite reductase
- 2vn4.pdb.
hydrolase 30-jan-08 2vn4
Title: glycoside hydrolase family 15 glucoamylase from hypocrea jecorina
Author: r. bott, m. sandgren, h. hansson
Keywords: glycoside hydrolase family 15, glucoamylase, amyloglucosidase, hypocrea jecorina
- 2vn7.pdb.
hydrolase 31-jan-08 2vn7
Ca
Title: glycoside hydrolase family 15 glucoamylase from hypocrea jecorina
Author: r. bott, m. sandgren, h. hansson
Keywords: glycoside hydrolase family 15, hypocrea jecorina, hydrolase
- 2vne.pdb.
lyase 04-feb-08 2vne
Se
Title: the x-ray structure of norcoclaurine synthase from thalictrum flavum
Author: a. ilari, s. franceschini, a. boffi, a. bonamore, a. pasquo
Keywords: norcoclaurine synthase, biosynthesis of benzylisoquinoline alkaloids
- 2vnh.pdb.
oxidoreductase 05-feb-08 2vnh
Title: x-ray structure of the ferredoxin-nadp(h) reductase from rhodobacter capsulatus in complex with nadp. form ii at 2. 27 angstroms resolution
Author: i. perez-dorado, j. a. hermoso
Keywords: rhodobacter capsulatus, ferredoxin(flavodoxin)-nadp(h) reductase, nadp, flavoproteins, oxidoreductase
- 2vni.pdb.
oxidoreductase 05-feb-08 2vni
Title: x-ray structure of the ferredoxin-nadp(h) reductase from rhodobacter capsulatus in complex with 2p-amp at 2.37 angstroms resolution
Author: i. perez-dorado, j. a. hermoso
Keywords: rhodobacter capsulatus, ferredoxin(flavodoxin)-nadp(h) reductase, nadp, flavoproteins, oxidoreductase
- 2vnj.pdb.
oxidoreductase 05-feb-08 2vnj
Title: x-ray structure of the ferredoxin-nadp(h) reductase from rhodobacter capsulatus in complex with nadp. form i at 2. 13 angstroms resolution
Author: i. perez-dorado, j. a. hermoso
Keywords: rhodobacter capsulatus, ferredoxin(flavodoxin)-nadp(h) reductase, nadp, flavoproteins, oxidoreductase
- 2vnk.pdb.
oxidoreductase 05-feb-08 2vnk
Title: x-ray structure of the ferredoxin-nadp(h) reductase from rhodobacter capsulatus in complex with nadp. form iii at 1. 93 angstroms resolution
Author: i. perez-dorado, j. a. hermoso
Keywords: rhodobacter capsulatus, ferredoxin(flavodoxin)-nadp(h) reductase, nadp, flavoproteins, oxidoreductase
- 2vo4.pdb.
transferase 08-feb-08 2vo4
Title: glutathione transferase from glycine max
Author: i. axarli, p. dhavala, a. c. papageorgiou, n. e. labrou
Keywords: glycine max, transferase, tau class gst, s-(p-nitrobenzyl- glutathione)
- 2voa.pdb.
lyase 11-feb-08 2voa
Title: structure of an ap endonuclease from archaeoglobus fulgidus
Author: e. b. kuettner, r. schmiedel, t. greiner-stoffele, n. strater
Keywords: ap endonuclease, archaeoglobus fulgidus, lyase
- 2voe.pdb.
oxidoreductase 17-feb-08 2voe
Title: crystal structure of rv2780 from m. tuberculosis h37rv
Author: s. m. tripathi, r. ramachandran
Keywords: secreted, oxidoreductase, nad, rv2780, pyruvate
- 2voj.pdb.
oxidoreductase 18-feb-08 2voj
Title: ternary complex of m. tuberculosis rv2780 with nad and pyruvate
Author: s. m. tripathi, r. ramachandran
Keywords: secreted, oxidoreductase, nad, rv2780, pyruvate
- 2vpl.pdb.
translation 01-mar-08 2vpl
K
Title: the structure of the complex between the first domain of l1 protein from thermus thermophilus and mrna from methanococcus jannaschii
Author: v. kljashtorny, s. tishchenko, n. nevskaya, s. nikonov, m. garber
Keywords: rna/protein complex, translation regulation, translation, repressor, rna-binding, trna-binding, rrna-binding
- 2vpt.pdb.
hydrolase 04-mar-08 2vpt
Ca Se
Title: clostridium thermocellum family 3 carbohydrate esterase
Author: m. a. s. correia, j. a. m. prates, j. bras, c. m. g. a. fontes, j. a. newman, r. j. lewis, h. j. gilbert, j. e. flint
Keywords: hydrolase
- 2vty.pdb.
apoptosis 19-may-08 2vty
Title: vaccinia virus anti-apoptotic f1l is a novel bcl-2-like domain swapped dimer
Author: m. kvansakul, h. yang, w. d. fairlie, p. e. czabotar, s. f. fischer, m. a. perugini, d. c. s. huang, p. m. colman
Keywords: apoptosis, vaccinia virus
- 2vu8.pdb.
hydrolase/inhibitor 21-may-08 2vu8
Title: crystal structure of an insect inhibitor with a fungal trypsin
Author: p. leone, a. roussel, c. kellenberger
Keywords: canonical inhibitor, inhibitor, serine protease, species selectivity, insect, zymogen, protease, secreted, hydrolase
- 2vuh.pdb.
dna-binding 26-may-08 2vuh
Title: crystal structure of the d55e mutant of the hupr receiver domain
Author: k. m. davies, e. d. lowe, c. venien-bryan, l. n. johnson
Keywords: response regulator
- 2vui.pdb.
dna-binding 26-may-08 2vui
Mg F Be
Title: crystal structure of the hupr receiver domain in inhibitory phospho-state
Author: k. m. davies, e. d. lowe, c. venien-bryan, l. n. johnson
Keywords: response regulator
- 2vum.pdb.
transferase 27-may-08 2vum
Mg Zn Br
Title: alpha-amanitin inhibited complete rna polymerase ii elongation complex
Author: f. brueckner, p. cramer
Keywords: phosphoprotein, intermediate, fungal toxin, polymorphism, nucleotidyltransferase, transcription mechanism
- 2vvl.pdb.
oxidoreductase 10-jun-08 2vvl
Title: the structure of mao-n-d3, a variant of monoamine oxidase from aspergillus niger.
Author: k. e. atkin, s. hart, j. p. turkenburg, a. m. brzozowski, g. j. grogan
Keywords: aspergillus niger, fad, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant
- 2vvm.pdb.
oxidoreductase 10-jun-08 2vvm
Title: the structure of mao-n-d5, a variant of monoamine oxidase from aspergillus niger.
Author: k. e. atkin, s. hart, j. p. turkenburg, a. m. brzozowski, g. j. grogan
Keywords: aspergillus niger, fad, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant
- 2vvn.pdb.
hydrolase 10-jun-08 2vvn
Title: btgh84 in complex with nh-butylthiazoline
Author: y. he, g. j. davies
Keywords: complex, hydrolase, inhibitor, glycosidase
- 2vwx.pdb.
transferase 27-jun-08 2vwx
Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
- 2vwy.pdb.
transferase 30-jun-08 2vwy
Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
- 2vwz.pdb.
transferase 30-jun-08 2vwz
Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
- 2vx0.pdb.
transferase 30-jun-08 2vx0
Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
- 2vx1.pdb.
transferase 30-jun-08 2vx1
Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
- 2vxi.pdb.
metal transport 04-jul-08 2vxi
Zn Fe
Title: the binding of heme and zinc in escherichia coli bacterioferritin
Author: s. c. willies, m. n. isupov, e. f. garman, j. a. littlechild
Keywords: bacterioferritin, iron storage and electron transport, zinc, heme, iron, iron storage, metal-binding
- 2vy1.pdb.
transcription 16-jul-08 2vy1
Title: structure of leafy transcription factor from arabidopsis thaliana in complex with dna from ap1 promoter
Author: c. hames, d. ptchelkine, c. grimm, e. thevenon, e. moyroud, f. gerard, j. l. martiel, r. benlloch, f. parcy, c. w. muller
Keywords: polymorphism, transcription, developmental protein, transcription regulation, homeotic genes, differentiation, flower development, leafy, nucleus, activator, flowering, coiled coil
- 2vy2.pdb.
transcription 16-jul-08 2vy2
Title: structure of leafy transcription factor from arabidopsis thaliana in complex with dna from ag-i promoter
Author: c. hames, d. ptchelkine, c. grimm, e. thevenon, e. moyroud, f. gerard, j. l. martiel, r. benlloch, f. parcy, c. w. muller
Keywords: crystal structure
- 2vyy.pdb.
oxygen transport 29-jul-08 2vyy
Fe
Title: mutant ala55trp of cerebratuls lacteus mini-hemoglobin
Author: m. d. salter, k. nienhaus, g. u. nienhaus, s. dewilde, l. moens, a. pesce, m. nardini, m. bolognesi, j. s. olson
Keywords: mini-hemoglobin, oxygen transport, heme, iron, transport, metal-binding
- 2vyz.pdb.
oxygen transport 29-jul-08 2vyz
Fe
Title: mutant ala55phe of cerebratulus lacteus mini-hemoglobin
Author: m. d. salter, k. nienhaus, g. u. nienhaus, s. dewilde, l. moens, a. pesce, m. nardini, m. bolognesi, j. s. olson
Keywords: mini-hemoglobin, oxygen transport, heme, iron, transport, metal-binding
- 2w0n.pdb.
transferase 19-aug-08 2w0n
He Hg
(solid-state NMR)
Title: plasticity of pas domain and potential role for signal transduction in the histidine-kinase dcus
Author: m. etzkorn, h. kneuper, p. duennwald, v. vijayan, j. kraemer, c. griesinger, s. becker, g. unden, m. baldus
Keywords: two-component regulatory system, pas, dcus, kinase, membrane, transferase, solid state nmr, cell inner membrane, cell membrane, transmembrane, phosphoprotein
- 2w0q.pdb.
oxidoreductase 20-aug-08 2w0q
Cu Ca Xe
Title: e. coli copper amine oxidase in complex with xenon
Author: p. pirrat, m. a. smith, a. r. pearson, m. j. mcpherson, s. e. v. phillips
Keywords: xenon, copper, e. coli, calcium, periplasm, oxygen entry, metal-binding, oxidoreductase, copper amine oxidase
- 2w0r.pdb.
membrane protein 06-oct-08 2w0r
Cl
Title: crystal structure of the mutated n263d yscu c-terminal domain
Author: u. wiesand, i. sorg, m. amstutz, s. wagner, j. van den heuvel, t. luehrs, g. r. cornelis, d. w. heinz
Keywords: autocleavage, recognition protein, type iii secretion system, membrane protein
- 2w1b.pdb.
membrane protein 17-oct-08 2w1b
Title: the structure of the efflux pump acrb in complex with bile acid
Author: d. drew, m. m. klepsch, s. newstead, r. flaig, j. w. de gier, s. iwata, k. beis
Keywords: cell membrane, transmembrane, inner membrane, drug resistance, membrane protein, multidrug efflux, membrane, transport, antiporter, transporter
- 2w1j.pdb.
transferase 17-oct-08 2w1j
Title: crystal structure of sortase c-1 (srtc-1) from streptococcus pneumoniae
Author: c. manzano, c. contreras-martel, l. el mortaji, t. izore, d. fenel, t. vernet, g. schoehn, a. m. di guilmi, a. dessen
Keywords: sortase, pneumococcus, pathogenicity, transferase
- 2w1k.pdb.
transferase 17-oct-08 2w1k
Title: crystal structure of sortase c-3 (srtc-3) from streptococcus pneumoniae
Author: c. manzano, c. contreras-martel, l. el mortaji, t. izore, d. fenel, t. vernet, g. schoehn, a. m. di guilmi, a. dessen
Keywords: sortase, pneumococcus, pathogenicity, transferase
- 2w1r.pdb.
transcription 20-oct-08 2w1r
Title: crystal structure of the c-terminal domain of b. subtilis spovt
Author: i. asen, s. djuranovic, a. n. lupas, k. zeth
Keywords: transcription, transcription regulation, repressor, activator, sporulation, dna-binding
- 2w1t.pdb.
transcription 20-oct-08 2w1t
Title: crystal structure of b. subtilis spovt
Author: i. asen, s. djuranovic, a. n. lupas, k. zeth
Keywords: transcription regulation, repressor, activator, sporulation, dna-binding, gaf domain regulated tetrameric spovt
- 2w20.pdb.
hydrolase 21-oct-08 2w20
Cl
Title: structure of the catalytic domain of the native nana sialidase from streptococcus pneumoniae
Author: g. xu, p. w. andrew, g. l. taylor
Keywords: cell wall, hydrolase, sialidase, glycosidase, neuraminidase, peptidoglycan-anchor
- 2w2c.pdb.
transferase 28-oct-08 2w2c
Cd
Title: structure of the tetradecameric oligomerisation domain of calcium-calmodulin dependent protein kinase ii delta
Author: a. c. w. pike, p. rellos, r. sethi, e. salah, n. burgess-brown, l. shrestha, a. roos, j. w. murray, f. von delft, a. edwards, c. h. arrowsmith, j. weigelt, c. bountra, s. knapp
Keywords: serine/threonine-protein kinase, kinase, transferase, atp-binding, polymorphism, phosphoprotein, calmodulin-binding, nucleotide-binding
- 2w2h.pdb.
rna-binding protein 30-oct-08 2w2h
Mn
Title: structural basis of transcription activation by the cyclin t1-tat-tar rna complex from eiav
Author: k. anand
Keywords: tar, tat, cyclin, nucleus, activator, cyclin t1, host-virus interaction, transcription regulation, cell cycle, rna-binding, acetylation, coiled coil, transcription, cell division, crystallization
- 2w2m.pdb.
hydrolase/receptor 03-nov-08 2w2m
Ca
Title: wt pcsk9-deltac bound to wt egf-a of ldlr
Author: m. j. bottomley, a. cirillo, l. orsatti, l. ruggeri, t. s. fisher, j. c. santoro, r. t. cummings, r. m. cubbon, p. lo surdo, a. calzetta, a. noto, j. baysarowich, m. mattu, f. talamo, r. de francesco, c. p. sparrow, a. sitlani, a. carfi
Keywords: steroid metabolism, receptor
- 2w2n.pdb.
hydrolase/receptor 03-nov-08 2w2n
Ca
Title: wt pcsk9-deltac bound to egf-a h306y mutant of ldlr
Author: m. j. bottomley, a. cirillo, l. orsatti, l. ruggeri, t. s. fisher, j. c. santoro, r. t. cummings, r. m. cubbon, p. lo surdo, a. calzetta, a. noto, j. baysarowich, m. mattu, f. talamo, r. de francesco, c. p. sparrow, a. sitlani, a. carfi
Keywords: steroid metabolism, receptor
- 2w2o.pdb.
hydrolase/receptor 03-nov-08 2w2o
Ca
Title: pcsk9-deltac d374y mutant bound to wt egf-a of ldlr
Author: m. j. bottomley, a. cirillo, l. orsatti, l. ruggeri, t. s. fisher, j. c. santoro, r. t. cummings, r. m. cubbon, p. lo surdo, a. calzetta, a. noto, j. baysarowich, m. mattu, f. talamo, r. de francesco, c. p. sparrow, a. sitlani, a. carfi
Keywords: steroid metabolism, receptor
- 2w2p.pdb.
hydrolase/receptor 03-nov-08 2w2p
Ca
Title: pcsk9-deltac d374a mutant bound to wt egf-a of ldlr
Author: m. j. bottomley, a. cirillo, l. orsatti, l. ruggeri, t. s. fisher, j. c. santoro, r. t. cummings, r. m. cubbon, p. lo surdo, a. calzetta, a. noto, j. baysarowich, m. mattu, f. talamo, r. de francesco, c. p. sparrow, a. sitlani, a. carfi
Keywords: steroid metabolism, receptor
- 2w2q.pdb.
hydrolase/receptor 03-nov-08 2w2q
Ca
Title: pcsk9-deltac d374h mutant bound to wt egf-a of ldlr
Author: m. j. bottomley, a. cirillo, l. orsatti, l. ruggeri, t. s. fisher, j. c. santoro, r. t. cummings, r. m. cubbon, p. lo surdo, a. calzetta, a. noto, j. baysarowich, m. mattu, f. talamo, r. de francesco, c. p. sparrow, a. sitlani, a. carfi
Keywords: steroid metabolism, receptor
- 2w38.pdb.
transferase 07-nov-08 2w38
Title: crystal structure of the pseudaminidase from pseudomonas aeruginosa
Author: g. xu, c. ryan, m. j. kiefel, j. c. wilson, g. l. taylor
Keywords: sialidase, neuraminidase, pseudaminic acid
- 2w3l.pdb.
apoptosis 13-nov-08 2w3l
Cl
Title: crystal structure of chimaeric bcl2-xl and phenyl tetrahydroisoquinoline amide complex
Author: j. porter, a. payne, b. de candole, d. ford, b. hutchinson, g. trevitt, j. turner, c. edwards, c. watkins, i. whitcombe, j. davis, c. stubberfield, m. fisher, m. lamers
- 2w3r.pdb.
oxidoreductase 14-nov-08 2w3r
Mo Fe Ca
Title: crystal structure of xanthine dehydrogenase (desulfo form) from rhodobacter capsulatus in complex with hypoxanthine
Author: u. dietzel, j. kuper, s. leimkuhler, c. kisker
Keywords: gout, iron, 2fe-2s, xanthine, iron-sulfur, molybdenum cofactor, hypoxanthine, metal-binding, oxidoreductase
- 2w3s.pdb.
oxidoreductase 14-nov-08 2w3s
Mo Fe Ca
Title: crystal structure of xanthine dehydrogenase (desulfo form) from rhodobacter capsulatus in complex with xanthine
Author: u. dietzel, j. kuper, s. leimkuhler, c. kisker
Keywords: xdh, gout, iron, 2fe-2s, xanthine, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine, hyperuricemia, metal-binding
- 2w4m.pdb.
hydrolase 28-nov-08 2w4m
Cl Na
Title: the crystal structure of human n-acetylneuraminic acid phosphatase, nanp
Author: e. ugochukwu, r. cocking, w. w. yue, a. c. w. pike, a. roos, j. r. c. muniz, f. von delft, c. bountra, c. h. arrowsmith, j. weigelt, a. edwards, u. oppermann
Keywords: neu5ac-9- phosphate, carbohydrate metabolism, n-acetylneuraminic acid phosphatase, nanp, hdhd4, hydrolase, magnesium, sialic acid
- 2w54.pdb.
oxidoreductase 04-dec-08 2w54
Ba Mo Fe
Title: crystal structure of xanthine dehydrogenase from rhodobacter capsulatus in complex with bound inhibitor pterin-6-aldehyde
Author: j. a. doebbler, j. j. truglio, s. leimkuhler, c. kisker
Keywords: xanthine oxidase, purine catabolism, p6a, iron, 2fe-2s, iron-sulfur, metal-binding, molybdenum cofactor
- 2w55.pdb.
oxidoreductase 04-dec-08 2w55
Ba Mo Fe
Title: crystal structure of xanthine dehydrogenase (e232q variant) from rhodobacter capsulatus in complex with hypoxanthine
Author: j. a. doebbler, j. j. truglio, s. leimkuhler, c. kisker
Keywords: gout, iron, 2fe-2s, xanthine, iron-sulfur, molybdenum cofactor, hypoxanthine, metal-binding, oxidoreductase
- 2w5a.pdb.
transferase 08-dec-08 2w5a
Mg
Title: human nek2 kinase adp-bound
Author: i. westwood, r. bayliss
Keywords: alternative splicing, coiled coil, polymorphism, cell division
- 2w5b.pdb.
transferase 08-dec-08 2w5b
Cl Mg
Title: human nek2 kinase atpgammas-bound
Author: r. bayliss
Keywords: alternative splicing, coiled coil, polymorphism, cell division
- 2w5h.pdb.
transferase 10-dec-08 2w5h
Title: human nek2 kinase atpgammas-bound
Author: r. bayliss
Keywords: alternative splicing, coiled coil, polymorphism, cell division
- 2zb3.pdb.
oxidoreductase 16-oct-07 2zb3
Title: crystal structure of mouse 15-ketoprostaglandin delta-13- reductase in complex with nadph
Author: y. h. wu, a. h. j. wang, t. p. ko, r. t. guo, s. m. hu, l. m. chuang
Keywords: oxidoreductase
- 2zb4.pdb.
oxidoreductase 16-oct-07 2zb4
Title: crystal structure of human 15-ketoprostaglandin delta-13- reductase in complex with nadp and 15-keto-pge2
Author: y. h. wu, a. h. j. wang, t. p. ko, r. t. guo, s. m. hu, l. m. chuang
Keywords: alternative splicing, cytoplasm, nadp, oxidoreductase
- 2zb7.pdb.
oxidoreductase 16-oct-07 2zb7
Title: crystal structure of human 15-ketoprostaglandin delta-13- reductase in complex with nadph and nicotinamide
Author: y. h. wu, a. h. j. wang, t. p. ko, r. t. guo, s. m. hu, l. m. chuang
Keywords: alternative splicing, cytoplasm, nadp, oxidoreductase
- 2zb8.pdb.
oxidoreductase 16-oct-07 2zb8
Cl
Title: crystal structure of human 15-ketoprostaglandin delta-13- reductase in complex with nadp and indomethacin
Author: y. h. wu, a. h. j. wang, t. p. ko, r. t. guo, s. m. hu, l. m. chuang
Keywords: alternative splicing, cytoplasm, nadp, oxidoreductase
- 2zeu.pdb.
transferase 17-dec-07 2zeu
Title: s. cerevisiae geranylgeranyl pyrophosphate synthase in complex with bph-715
Author: r. t. guo, c. k. -m. chen, r. cao, e. oldfield, a. h. -j. wang
Keywords: farnesyl pyrophosphate, bisphosphonate, carotenoid biosynthesis, cytoplasm, isoprene biosynthesis, multifunctional enzyme, protein transport, transport
- 2zev.pdb.
transferase 17-dec-07 2zev
Mg
Title: s. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium, ipp and bph-715
Author: r. t. guo, c. k. -m. chen, r. cao, e. oldfield, a. h. -j. wang
Keywords: farnesyl pyrophosphate, bisphosphonate, carotenoid biosynthesis, cytoplasm, isoprene biosynthesis, multifunctional enzyme, protein transport, transport
- 2zpk.pdb.
immune system 16-jul-08 2zpk
Title: crystal structure of p20.1 fab fragment in complex with its antigen peptide
Author: t. nogi, t. sanagawa, j. takagi
Keywords: immune system
- 3bdn.pdb.
transcription/dna 15-nov-07 3bdn
Title: crystal structure of the lambda repressor
Author: s. e. stayrook, p. jaru-ampornpam, a. hochschild, m. lewis
Keywords: repressor, allostery, cooperativity, dna binding, transcription/dna complex
- 3bgt.pdb.
lyase 27-nov-07 3bgt
Se
Title: structural studies of acetoacetate decarboxylase
Author: m. ho, k. n. allen
Keywords: lyase, schiff base
- 3bh2.pdb.
lyase 27-nov-07 3bh2
Title: structural studies of acetoacetate decarboxylase
Author: m. ho, k. n. allen
Keywords: lyase, plasmid, schiff base
- 3bh3.pdb.
lyase 27-nov-07 3bh3
Title: crystal structure of acetoacetate decarboxylase from chromobacterium violaceum in complex with acetyl acetone schiff base intermediate
Author: m. ho, k. n. allen
Keywords: schiff base intermediate, lyase
- 3bo8.pdb.
immune system 17-dec-07 3bo8
Title: the high resolution crystal structure of hla-a1 complexed with the mage-a1 peptide
Author: p. kumar, a. vahedi-faridi, w. saenger, a. ziegler, b. uchanska- ziegler
Keywords: tumor antigen, immune system
- 3bp4.pdb.
immune system 18-dec-07 3bp4
Title: the high resolution crystal structure of hla-b*2705 in complex with a cathepsin a signal sequence peptide pcata
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: transmembrane, ubl conjugation, disease mutation, glycation, immunoglobulin domain, pyrrolidone carboxylic acid, secreted, carboxypeptidase, hydrolase, lysosome, protease, zymogen, immune system
- 3bp7.pdb.
immune system 18-dec-07 3bp7
Title: the high resolution crystal structure of hla-b*2709 in complex with a cathepsin a signal sequence peptide, pcata
Author: p. kumar, a. vahedi-faridi, w. saenger, b. uchanska-ziegler, a. ziegler
Keywords: protease, zymogen, immune system
- 3bpq.pdb.
toxin 19-dec-07 3bpq
Title: crystal structure of relb-rele antitoxin-toxin complex from methanococcus jannaschii
Author: d. francuski, w. saenger
- 3bqz.pdb.
transcription 20-dec-07 3bqz
Title: crystal structure of the complex of malachite green bound to qacr(e90q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, malachite green, dna- binding, plasmid, repressor, transcription, transcription regulation
- 3br0.pdb.
transcription 20-dec-07 3br0
Title: crystal structure of the complex of malachite green bound to qacr(e120q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, malachite green, dna- binding, plasmid, repressor, transcription, transcription regulation
- 3br1.pdb.
transcription 20-dec-07 3br1
Title: crystal structure of the complex of dequalinium bound to qacr(e90q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, dequalinium, dna-binding, plasmid, repressor, transcription, transcription regulation
- 3br2.pdb.
transcription 20-dec-07 3br2
Title: crystal structure of the complex of dequalinium bound to qacr(e120q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, dequalinium, dna-binding, plasmid, repressor, transcription, transcription regulation
- 3br3.pdb.
transcription 20-dec-07 3br3
Title: crystal structure of the complex of ethidium bound to qacr(e90q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, ethidium, dna-binding, plasmid, repressor, transcription, transcription regulation
- 3br5.pdb.
transcription 20-dec-07 3br5
Title: crystal structure of the complex of rhodamine 6g bound to qacr(e90q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, rhodamine 6g, dna-binding, plasmid, repressor, transcription, transcription regulation
- 3br6.pdb.
transcription 20-dec-07 3br6
Title: crystal structure of the complex of rhodamine 6g bound to qacr(e120q), a mutant of a multidrug binding transcriptional repressor
Author: b. e. brooks
Keywords: multidrug resistance, tetr, rhodamine 6g, dna-binding, plasmid, repressor, transcription, transcription regulation
- 3br9.pdb.
transferase 21-dec-07 3br9
Title: crystal structure of hcv ns5b polymerase with a novel pyridazinone inhibitor
Author: q. zhao, r. e. showalter, q. han, c. r. kissinger
Keywords: host- virus interaction, antiviral, viral nucleoprotein, hydrolase
- 3bs8.pdb.
isomerase 22-dec-07 3bs8
Title: crystal structure of glutamate 1-semialdehyde aminotransferase complexed with pyridoxamine-5'-phosphate from bacillus subtilis
Author: h. ge, j. fan, m. teng, l. niu
Keywords: 1-aminotransferase, porphyrin biosynthesis, cytoplasm, isomerase, pyridoxal phosphate
- 3bsa.pdb.
transferase 23-dec-07 3bsa
Title: crystal structure of hcv ns5b polymerase with a novel pyridazinone inhibitor
Author: q. han, r. e. showalter, q. zhao, c. r. kissinger
Keywords: rna replication, rna-binding, rna- directed rna polymerase, transcription, transcription regulation, transferase, transmembrane, viral nucleoprotein
- 3bsc.pdb.
transferase 23-dec-07 3bsc
Title: crystal structure of hcv ns5b polymerase with a novel pyridazinone inhibitor
Author: q. zhao, r. e. showalter, q. han, c. r. kissinger
Keywords: rna replication, rna-binding, rna- directed rna polymerase, transcription, transcription regulation, transferase, transmembrane, viral nucleoprotein
- 3bse.pdb.
deoxyribonucleic acid 23-dec-07 3bse
Ca
Title: crystal structure analysis of a 16-base-pair b-dna
Author: n. narayana
Keywords: dna structure, doublesex, protein-dna recognition, sex determination
- 3bt3.pdb.
structural genomics, unknown function 27-dec-07 3bt3
Title: crystal structure of a glyoxalase-related enzyme from clostridium phytofermentans
Author: k. n. rao, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: transcription, transcription regulation, structural genomics, unknown function
- 3c2p.pdb.
transferase/dna 25-jan-08 3c2p
Title: x-ray crystal structure of the n4 mini-vrnap p1 promoter complex
Author: m. l. gleghorn, k. s. murakami
Keywords: nucleotidyltransferase, promoter binary complex, dna-hairpin, virion rna polymerase, transferase/dna complex
- 3c3l.pdb.
transferase/dna 28-jan-08 3c3l
Title: x-ray crystal structure of the n4 mini-vrnap p2 promoter complex
Author: m. l. gleghorn, k. s. murakami
Keywords: nucleotidyltransferase, promoter binary complex, dna-hairpin, virion rna polymerase, transferase/dna complex
- 3c46.pdb.
transferase/dna 29-jan-08 3c46
Title: x-ray crystal structure of the n4 mini-vrnap p2_7a promoter complex soaked with mgcl2
Author: m. l. gleghorn, k. s. murakami
Keywords: nucleotidyltransferase, promoter binary complex, dna-hairpin, virion rna polymerase, phosphate ion, transferase/dna complex
- 3c7q.pdb.
transferase 08-feb-08 3c7q
Title: structure of vegfr2 kinase domain in complex with bibf1120
Author: f. hilberg, g. j. roth, m. krssak, s. kautschitsch, w. sommergruber, u. tontsch-grunt, p. garin-chesa, g. bader, a. zoephel, j. quant, a. heckel, w. j. rettig
Keywords: receptor, transferase, transmembrane, tyrosine-protein kinase
- 3c9g.pdb.
nucleotide binding protein 15-feb-08 3c9g
Title: crystal structure of uncharacterized upf0201 protein af_135
Author: r. sugadev, s. ozyurt, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: nucleotide binding protein
- 3caq.pdb.
oxidoreductase 20-feb-08 3caq
Title: crystal structure of 5beta-reductase (akr1d1) in complex with nadph
Author: f faucher, l cantin, r breton
Keywords: oxidoreductase, steroid metabolism
- 3cas.pdb.
oxidoreductase 20-feb-08 3cas
Title: crystal structure of 5beta-reductase (akr1d1) in complex with nadp+ and 4-androstenedione
Author: f faucher, l cantin, r breton
Keywords: steroid metabolism
- 3cax.pdb.
structural genomics, unknown function 20-feb-08 3cax
Title: crystal structure of uncharacterized protein pf0695
Author: u. a. ramagopal, s. hu, r. toro, m. gilmore, k. bain, a. j. meyer, l. rodgers, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3ce2.pdb.
structural genomics, unknown function 28-feb-08 3ce2
Zn
Title: crystal structure of putative peptidase from chlamydophila abortus
Author: u. a. ramagopal, r. toro, m. gilmore, m. eberle, m. maletic, a. j. meyer, l. rodgers, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, putative peptidase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cfy.pdb.
structural genomics, unknown function 04-mar-08 3cfy
Title: crystal structure of signal receiver domain of putative luxo repressor protein from vibrio parahaemolyticus
Author: y. patskovsky, u. a. ramagopal, r. fong, j. freeman, m. iizuka, c. groshong, d. smith, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: nucleotide-binding, transcription, transcription regulation
- 3cg0.pdb.
lyase 04-mar-08 3cg0
Title: crystal structure of signal receiver domain of modulated diguanylate cyclase from desulfovibrio desulfuricans g20, an example of alternate folding
Author: y. patskovsky, j. b. bonanno, r. romero, m. gilmore, s. chang, c. groshong, j. koss, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: diguanylate cyclase, protein structure initiative, psi-2, new york structural genomix research consortium, nysgxrc, structural genomics, lyase
- 3cih.pdb.
hydrolase 11-mar-08 3cih
Se
Title: crystal structure of a putative alpha-rhamnosidase from bacteroides thetaiotaomicron
Author: d. kumaran, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: protein structure initiative ii, nysgxrc, 12028b, (alpha/alpha)6 barrel domain, beta sandwich domain, glycoside, biosurfactans, psi-2, new york structural genomix research consortium, hydrolase
- 3cjp.pdb.
hydrolase 13-mar-08 3cjp
Zn
Title: crystal structure of an uncharacterized amidohydrolase cac3332 from clostridium acetobutylicum
Author: v. n. malashkevich, r. toro, u. a. ramagopal, j. b. bonanno, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: crystal structure, protein structure initiative, new york structural genomix research consortium, nysgxrc, amidohydrolase, cac3332, psi-2
- 3ck5.pdb.
isomerase 14-mar-08 3ck5
Mg Se
Title: crystal structure of a racemase from streptomyces coelicolor a3(2) with bound magnesium
Author: k. n. rao, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: racemase, magnesium, streptomyces coelicolor a3(2), 9301a, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, isomerase
- 3ckw.pdb.
transferase 17-mar-08 3ckw
Hg
Title: crystal structure of sterile 20-like kinase 3 (mst3, stk24)
Author: s. s. antonysamy, s. k. burley, s. buchanan, f. chau, i. feil, l. wu, j. m. sauder, new york structural genomix research consortium (nysgxrc)
Keywords: nucleotide- binding, phosphoprotein, serine/threonine-protein kinase, transferase
- 3ckx.pdb.
transferase 17-mar-08 3ckx
Title: crystal structure of sterile 20-like kinase 3 (mst3, stk24) in complex with staurosporine
Author: s. s. antonysamy, s. k. burley, s. buchanan, f. chau, i. feil, l. wu, j. m. sauder, new york structural genomix research consortium (nysgxrc)
Keywords: cytoplasm, nucleotide-binding, phosphoprotein, serine/threonine- protein kinase, transferase
- 3cli.pdb.
lyase 19-mar-08 3cli
Fe
Title: crystal structure of arabidopsis thaliana allene oxide synthase (aos, cytochrome p450 74a, cyp74a) at 1.80 a resolution
Author: d. -s. lee, p. nioche, c. s. raman
Keywords: lyase
- 3clk.pdb.
transcription regulator 19-mar-08 3clk
Se
Title: crystal structure of a transcription regulator from lactobacillus plantarum
Author: r. sugadev, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: transcription regulator
- 3clw.pdb.
structural genomics, unknown function 20-mar-08 3clw
Title: crystal structure of conserved exported protein from bacteroides fragilis
Author: j. b. bonanno, m. rutter, k. t. bain, s. chang, k. ozyurt, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cmg.pdb.
hydrolase 21-mar-08 3cmg
Cl
Title: crystal structure of putative beta-galactosidase from bacteroides fragilis
Author: u. a. ramagopal, m. rutter, r. toro, s. hu, m. maletic, t. gheyi, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: putative beta-galactosidase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, hydrolase
- 3cmk.pdb.
hydrolase 22-mar-08 3cmk
Co
Title: crystal structure of an encephalitozoon cuniculi methionine aminopeptidase type 2 with angiogenesis inhibitor fumagillin bound
Author: j. alvarado, m. russell, a. zhang, j. adams, r. toro, s. k. burley, l. m. weiss, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: metal-binding, protease
- 3cmn.pdb.
hydrolase 24-mar-08 3cmn
Title: crystal structure of a putative hydrolase with a novel fold from chloroflexus aurantiacus
Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc, putative hydrolase, apoenzyme, helical protein, 10492m, structural genomics, protein structure initiative, new york structural genomix research consortium
- 3cnb.pdb.
dna binding protein 25-mar-08 3cnb
Title: crystal structure of signal receiver domain of dna binding response regulator protein (merr) from colwellia psychrerythraea 34h
Author: y. patskovsky, r. romero, j. freeman, s. hu, c. groshong, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: dna binding protein, protein structure initiative, psi-2, new york structural genomix research consortium, nysgxrc, structural genomics, dna- binding
- 3co4.pdb.
hydrolase 27-mar-08 3co4
Se
Title: crystal structure of a chitinase from bacteroides thetaiotaomicron
Author: l. damodharan, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: tim-barrel, 11092m, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, glycosidase, hydrolase
- 3co8.pdb.
isomerase 27-mar-08 3co8
Se
Title: crystal structure of alanine racemase from oenococcus oeni
Author: k. palani, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: alanine racemase, protein structure initiative ii, psi-ii, nysgxrc, 11082i, plp, tim barrel, structural genomics, new york structural genomix research consortium, isomerase, pyridoxal phosphate
- 3coi.pdb.
transferase 28-mar-08 3coi
Title: crystal structure of p38delta kinase
Author: s. atwell, s. k. burley, a. houle, a. ramos, j. m. sauder, new york structural genomix research consortium (nysgxrc)
Keywords: atp-binding, cell cycle, nucleotide-binding, phosphoprotein, serine/threonine- protein kinase, transferase
- 3cok.pdb.
transferase 28-mar-08 3cok
Title: crystal structure of plk4 kinase
Author: s. atwell, s. k. burley, a. houle, b. leon, l. a. pelletier, j. m. sauder, new york structural genomix research consortium (nysgxrc)
Keywords: polymorphism, serine/threonine-protein kinase, transferase
- 3com.pdb.
transferase 28-mar-08 3com
Title: crystal structure of mst1 kinase
Author: s. atwell, s. k. burley, m. dickey, b. leon, j. m. sauder, new york structural genomix research consortium (nysgxrc)
Keywords: apoptosis, atp-binding, coiled coil, cytoplasm, magnesium, metal-binding, nucleotide-binding, nucleus, phosphoprotein, polymorphism, transferase
- 3cpg.pdb.
structural genomics, unknown function 31-mar-08 3cpg
Se
Title: crystal structure of an unknown protein from bifidobacterium adolescentis
Author: r. sugadev, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: tim barrel, 11083b, monomer, structural genomics, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, structural genomics, unknown function
- 3cpl.pdb.
immune system 31-mar-08 3cpl
Title: crystal structure of h-2db in complex with a variant m6a of the np366 peptide from influenza a virus
Author: k. kedzierska, c. guillonneau, l. a. hatton, d. stockwell, s. gras, r. webby, j. rossjohn, a. w. purcell, p. c. doherty, s. j. turner
Keywords: crystal structure, influenza, np366, immunology, glycoprotein, immune response, membrane, mhc i, transmembrane, immunoglobulin domain, polymorphism, secreted, immune system
- 3cqx.pdb.
chaperone 03-apr-08 3cqx
Na
Title: chaperone complex
Author: z. xu, j. c. nix, s. misra
Keywords: atp-binding, chaperone, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, stress response, coiled coil
- 3crn.pdb.
signaling protein 07-apr-08 3crn
Na Se
Title: crystal structure of response regulator receiver domain protein (chey-like) from methanospirillum hungatei jf-1
Author: r. l. hiner, r. toro, y. patskovsky, j. freeman, s. chang, d. smith, c. groshong, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: signal regulator receiver domain, protein structure initiative, psi-2, new york structural genomix research consortium, nysgxrc, signaling protein
- 3cs3.pdb.
transcription regulator 08-apr-08 3cs3
Title: crystal structure of sugar-binding transcriptional regulator (laci family) from enterococcus faecalis
Author: y. patskovsky, r. romero, j. freeman, m. iizuka, c. groshong, d. smith, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: sugar-binding transcriptional regulator, protein structure initiative, psi-2, new york structural genomix research consortium, nysgxrc, dna- binding, transcription regulation, transcription regulator
- 3ct2.pdb.
isomerase 11-apr-08 3ct2
Mg
Title: crystal structure of muconate cycloisomerase from pseudomonas fluorescens
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: target 9450f, mle, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, isomerase
- 3ctd.pdb.
structural genomics, unknown function 11-apr-08 3ctd
Title: crystal structure of a putative aaa family atpase from prochlorococcus marinus subsp. pastoris
Author: j. b. bonanno, m. rutter, k. t. bain, c. lau, s. ozyurt, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc, atp-binding, nucleotide-binding
- 3ctp.pdb.
transcription regulator 14-apr-08 3ctp
Na
Title: crystal structure of periplasmic binding protein/laci transcriptional regulator from alkaliphilus metalliredigens qymf complexed with d-xylulofuranose
Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: transcription regulation, transcription regulator, psi-2
- 3cu5.pdb.
transcription regulator 15-apr-08 3cu5
Title: crystal structure of a two component transcriptional regulator arac from clostridium phytofermentans isdg
Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: crystal structure, protein structure initiative, new york structural genomix research consortium, nysgxrc, transcriptional regulator, arac, transcription regulator, psi-2
- 3cvg.pdb.
metal binding protein 18-apr-08 3cvg
Ca Se
Title: crystal structure of a periplasmic putative metal binding protein
Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: psi-ii, nysgxrc, periplasmic, metal binding, structural genomics, protein structure initiative, new york structural genomix research consortium, metal binding protein
- 3cwv.pdb.
isomerase 22-apr-08 3cwv
Title: crystal structure of b-subunit of the dna gyrase from myxococcus xanthus
Author: u. a. ramagopal, r. toro, a. j. meyer, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, dna gyrase, b- subunit, atp-binding, isomerase, nucleotide-binding, topoisomerase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cxj.pdb.
structural genomics, unknown function 24-apr-08 3cxj
Se
Title: crystal structure of an uncharacterized protein from methanothermobacter thermautotrophicus
Author: r. sugadev, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: psi-ii, uncharacterized protein, structural genomics, protein structure initiative, new york structural genomix research consortium, nysgxrc, structural genomics, unknown function
- 3cyg.pdb.
structural genomics, unknown function 25-apr-08 3cyg
Se
Title: crystal structure of an uncharacterized protein from fervidobacterium nodosum rt17-b1
Author: l. damodharan, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: psi-ii, 10495j, fervibacterium nodosum, structural genomics, protein structure initiative, new york structural genomix research consortium, nysgxrc, structural genomics, unknown function
- 3cyj.pdb.
isomerase 25-apr-08 3cyj
Na
Title: crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from rubrobacter xylanophilus
Author: j. b. bonanno, j. freeman, k. t. bain, f. zhang, j. bravo, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: isomerase, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3cym.pdb.
structural genomics, unknown function 25-apr-08 3cym
Na
Title: crystal structure of protein bad_0989 from bifidobacterium adolescentis
Author: y. patskovsky, s. ozyurt, j. freeman, s. chang, k. bain, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, uncharacterized protein, ribonuclease d, exonuclease, protein structure initiative, psi-2, new york structural genomix research consortium, nysgxrc
- 3cz5.pdb.
transcription regulator 28-apr-08 3cz5
Title: crystal structure of two-component response regulator, luxr family, from aurantimonas sp. si85-9a1
Author: v. n. malashkevich, r. toro, s. r. wasserman, a. meyer, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: new york structural genomix research consortium, dna-binding, transcription, transcription regulation, transcription regulator
- 3cz8.pdb.
hydrolase 28-apr-08 3cz8
Title: crystal structure of putative sporulation-specific glycosylase ydhd from bacillus subtilis
Author: y. patskovsky, r. romero, m. rutter, s. chang, m. maletic, d. smith, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: sporulation
- 3czb.pdb.
structural genomics, unknown function 28-apr-08 3czb
Title: crystal structure of putative transglycosylase from caulobacter crescentus
Author: u. a. ramagopal, k. chattopadhyay, r. toro, s. wasserman, j. freeman, c. logan, k. bain, t. gheyi, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 3d0c.pdb.
lyase 01-may-08 3d0c
Se
Title: crystal structure of dihydrodipicolinate synthase from oceanobacillus iheyensis at 1.9 a resolution
Author: l. satyanarayana, s. eswaramoorthy, j. m. sauder, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: pyruvate, tim barrel, nysgxrc, 9375o, psi-2, structural genomics, protein structure initiative, new york structural genomix research consortium, lyase
- 3d0d.pdb.
hydrolase 01-may-08 3d0d
Co
Title: crystal structure of an encephalitozoon cuniculi methionine aminopeptidase type 2 with angiogenesis inhibitor tnp470 bound
Author: j. alvarado, m. russell, a. zhang, j. adams, r. toro, s. k. burley, l. m. weiss, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc, cobalt, hydrolase, metal-binding, protease
- 3d1r.pdb.
hydrolase 06-may-08 3d1r
Cl Mg Ca
Title: structure of e. coli glpx with its substrate fructose 1,6- bisphosphate
Author: a. u. singer, t. skarina, a. dong, g. brown, a. joachimiak, a. m. edwards, a. f. yakunin, a. savchenko, midwest center for structural genomics (mcsg)
Keywords: mcsg
- 3d2d.pdb.
oxidoreductase 08-may-08 3d2d
Title: structure of berberine bridge enzyme in complex with (s)- reticuline
Author: a. winkler, a. lyskowski, p. macheroux, k. gruber
Keywords: n-glycosylation, substrate complex, alakloid biosynthesis, oxidoreductase
- 3d2h.pdb.
oxidoreductase 08-may-08 3d2h
Title: structure of berberine bridge enzyme from eschscholzia californica, monoclinic crystal form
Author: a. winkler, a. lyskowski, p. macheroux, k. gruber
Keywords: n-glycosylation, alakloid biosynthesis, p-cresol methylhydroxylase superfamily, oxidoreductase
- 3d2j.pdb.
oxidoreductase 08-may-08 3d2j
Mg
Title: structure of berberine bridge enzyme from eschscholzia californica, tetragonal crystal form
Author: a. winkler, a. lyskowski, p. macheroux, k. gruber
Keywords: n-glycosylation, alakloid biosynthesis, p-cresol methylhydroxylase superfamily, oxidoreductase
- 3d2m.pdb.
transferase 08-may-08 3d2m
Title: crystal structure of n-acetylglutamate synthase from neisseria gonorrhoeae complexed with coenzyme a and l- glutamate
Author: d. shi, l. min, z. jin, n. m. allewell, m. tuchman
Keywords: transferase
- 3d2p.pdb.
transferase 08-may-08 3d2p
Title: crystal structure of n-acetylglutamate synthase from neisseria gonorrhoeae complexed with coenzyme a and l- arginine
Author: d. shi, l. min, z. jin, n. m. allewell, m. tuchman
Keywords: transferase
- 3d3a.pdb.
hydrolase 09-may-08 3d3a
Se
Title: crystal structure of a beta-galactosidase from bacteroides thetaiotaomicron
Author: k. palani, d. kumaran, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: beta-galactosidase, bacteroides thetaiotaomicron, protein structure initiative ii, psi ii, nysgxrc, 11092f, structural genomics, new york structural genomix research consortium, glycosidase, hydrolas...
- 3d46.pdb.
lyase 14-may-08 3d46
Mg
Title: crystal structure of l-rhamnonate dehydratase from salmonella typhimurium complexed with mg and l-tartrate
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc, target 9265a, l-rhamnonate dehydratase, psi-2, protein structure initiative, new york structural genomix research consortium, lyase
- 3d47.pdb.
lyase 14-may-08 3d47
Mg
Title: crystal structure of l-rhamnonate dehydratase from salmonella typhimurium complexed with mg and d-malate
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc, l-rhamnonate dehydratase, target 9265a, psi-2, protein structure initiative, new york structural genomix research consortium, lyase
- 3d5l.pdb.
signaling protein 16-may-08 3d5l
Title: crystal structure of regulatory protein recx
Author: r. agarwal, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: psi-ii, nysgxrc, recx, dna repair, 10123k, structural genomics, protein structure initiative, new york structural genomix research consortium, cytoplasm, signaling protein
- 3d7s.pdb.
transferase 21-may-08 3d7s
Zn
Title: crystal structure of wild-type e. coli asparate transcarbamoylase at ph 8.5 at 2.80 a resolution
Author: k. a. stieglitz, j. xia, e. r. kantrowitz
Keywords: positively charged channel, apoenzyme, pyrimidine biosynthesis, transferase, metal-binding, zinc
- 3d85.pdb.
immune system/cytokine 22-may-08 3d85
Title: crystal structure of il-23 in complex with neutralizing fab
Author: b. m. beyer, r. ingram, l. ramanathan, p. reichert, h. le, v. madison
Keywords: fab, immune system/cytokine complex
- 3d87.pdb.
cytokine 22-may-08 3d87
K
Title: crystal structure of interleukin-23
Author: b. m. beyer, r. ingram, l. ramanathan, p. reichert, h. le, v. madison
Keywords: fab, cytokine
- 3d92.pdb.
lyase 26-may-08 3d92
Zn
Title: human carbonic anhydrase ii bound with substrate carbon dioxide
Author: j. f. domsic, b. s. avvaru, r mckenna
Keywords: substrate-bound, acetylation, cytoplasm, disease mutation, lyase, metal-binding, polymorphism, zinc
- 3d93.pdb.
lyase 26-may-08 3d93
Title: apo human carbonic anhydrase ii bound with substrate carbon dioxide
Author: j. f. domsic, b. s. avvaru, r. mckenna
Keywords: substrate-bound, acetylation, cytoplasm, disease mutation, lyase, metal-binding, polymorphism, zinc
- 3dbi.pdb.
transcription regulator 01-jun-08 3dbi
Se
Title: crystal structure of sugar-binding transcriptional regulator (laci family) from escherichia coli complexed with phosphate
Author: y. patskovsky, s. ozyurt, j. freeman, b. wu, m. maletic, j. koss, s. r. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: repressor, transcription
- 3dd4.pdb.
transport protein 05-jun-08 3dd4
Ca
Title: structural basis of kchip4a modulation of kv4.3 slow inactivation
Author: j. chai, h. wang, k. wang
Keywords: alternative splicing, calcium, ion transport, ionic channel, membrane, potassium, potassium channel, potassium transport, transport, voltage-gated channel, transport protein
- 3dda.pdb.
hydrolase 05-jun-08 3dda
Zn
Title: crystal structure of the catalytic domain of botulinum neurotoxin serotype a with a snap-25 peptide
Author: d. kumaran, s. swaminathan
Keywords: alternative splicing, cell junction, coiled coil, lipoprotein, palmitate, phosphoprotein, synapse, synaptosome
- 3ddb.pdb.
hydrolase 05-jun-08 3ddb
Zn
Title: crystal structure of the catalytic domain of botulinum neurotoxin serotype a with a substrate analog peptide
Author: d. kumaran, s. swaminathan
Keywords: botox, catalytic domain, endopeptidase, syntaxin, bio-warfare agent, hydrolase, metal-binding, metalloprotease, protease, secreted, transmembrane, zinc, enzyme-substrate complex, pharmaceutical
- 3ddf.pdb.
hydrolase 05-jun-08 3ddf
Zn
Title: golgi mannosidase ii complex with (3r,4r,5r)-3,4-dihydroxy- 5-({[(1r)-2-hydroxy-1 phenylethyl]amino}methyl) pyrrolidin- 2-one
Author: d. a. kuntz, d. r. rose, d. hoffman
Keywords: hydrolase
- 3ddg.pdb.
hydrolase 05-jun-08 3ddg
Zn
Title: golgi mannosidase ii complex with (3r,4r,5r)-3,4-dihydroxy- 5-({[(1r)-2-hydroxy-1 phenylethyl]amino}methyl) methylpyrrolidin-2-one
Author: d. a. kuntz, d. r. rose, d. hoffman
Keywords: hydrolase
- 3dec.pdb.
hydrolase 09-jun-08 3dec
K Se
Title: crystal structure of a glycosyl hydrolases family 2 protein from bacteroides thetaiotaomicron
Author: d. kumaran, j. bonanno, r. romero, s. k. burley, s. swaminathan, new york structural genomix research consortium (nysgxrc)
Keywords: new york structural genomix research consortium
- 3dfj.pdb.
hydrolase 12-jun-08 3dfj
Cl
Title: crystal structure of human prostasin
Author: h. p. su, k. w. rickert, p. l. darke, s. k. munshi
Keywords: serine protease, glycoprotein, hydrolase, membrane, secreted, transmembrane, zymogen
- 3dfl.pdb.
hydrolase 12-jun-08 3dfl
Title: crystal structure of human prostasin complexed to 4- guanidinobenzoic acid
Author: h. p. su, k. w. rickert, p. l. darke, s. k. munshi
Keywords: serine protease, glycoprotein, hydrolase, membrane, secreted, transmembrane, zymogen
- 3djh.pdb.
isomerase 23-jun-08 3djh
Title: macrophage migration inhibitory factor (mif) at 1.25 a resolution
Author: g. v. crichlow, e. lolis
Keywords: cytokine, inflammatory response, isomerase, phosphoprotein
- 3dji.pdb.
isomerase 23-jun-08 3dji
Cl
Title: crystal structure of covalent macrophage migration inhibitory factor bound to an acetaminophen dimer derived from napqi
Author: g. v. crichlow, e. lolis
Keywords: acetaminophen dimer, cytokine, inflammatory response, isomerase, phosphoprotein
- 3drw.pdb.
transferase 11-jul-08 3drw
Na
Title: crystal structure of a phosphofructokinase from pyrococcus horikoshii ot3 with amp
Author: a. u. singer, t. skarina, s. kochinyan, g. brown, m. e. cuff, a. m. edwards, a. joachimiak, a. savchenko, a. f. yakunin, z. jia, midwest center for structural genomics (mcsg)
Keywords: mcsg
- 3du1.pdb.
structural protein 16-jul-08 3du1
Title: the 2.0 angstrom resolution crystal structure of hetl, a pentapeptide repeat protein involved in heterocyst differentiation regulation from the cyanobacterium nostoc sp. strain pcc 7120
Author: m. a. kennedy, s. ni, g. m. sheldrick
Keywords: repeated five residue fold, pentapeptide repeat protein, structural protein
- 3duk.pdb.
structural genomics, unknown function 17-jul-08 3duk
Cl Se
Title: crystal structure of ntf2-like protein of unknown function (yp_544675.1) from methylobacillus flagellatus kt at 2.200 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: ntf2-like protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3dxr.pdb.
protein transport 24-jul-08 3dxr
Title: crystal structure of the yeast inter-membrane space chaperone assembly tim9.10
Author: c. t. webb, j. m. gulbis
Keywords: chaperone, inner membrane, membrane, metal- binding, mitochondrion, protein transport, translocation, transport, zinc
- 3dzd.pdb.
transcription regulator 29-jul-08 3dzd
Na Se
Title: crystal structure of sigma54 activator ntrc4 in the inactive state
Author: j. d. batchelor, m. doucleff, c. -j. lee, k. matsubara, s. de carlo, j. heideker, m. m. lamers, j. g. pelton, d. e. wemmer
Keywords: aaa+ atpase, response regulator, transcriptional activator, atp-binding, nucleotide-binding, transcription, transcription regulation, transcription regulator
- 3dzm.pdb.
unknown function 30-jul-08 3dzm
Ca
Title: crystal structure of a major outer membrane protein from thermus thermophilus hb27
Author: a. brosig, k. diederichs
Keywords: thermus thermophilus hb27, beta-barrel, ttoa, unknown function
- 3e0b.pdb.
oxidoreductase 31-jul-08 3e0b
Title: bacillus anthracis dihydrofolate reductase complexed with nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1- ynyl)-6-ethylpyrimidine (ucp120b)
Author: a. c. anderson, j. m. beierlein, k. m. frey
- 3e5h.pdb.
signaling protein 13-aug-08 3e5h
Mg
Title: crystal structure of rab28 gtpase in the active (gppnhp- bound) form
Author: s. h. lee, k. baek, y. li, r. dominguez
Keywords: signaling protein, alternative splicing, cell membrane, gtp-binding, lipoprotein, membrane, nucleotide- binding, prenylation
- 3e5q.pdb.
transcription regulation 14-aug-08 3e5q
Title: unbound oxidised cprk
Author: c. levy
Keywords: halorespiration, transcriptional regulator, transcription regulation
- 3e5u.pdb.
transcription regulation 14-aug-08 3e5u
Cl Na
Title: ocpa complexed cprk (c200s)
Author: c. levy
Keywords: halorespiration, transcriptional regulator, transcription regulation
- 3e6b.pdb.
transcription regulation 15-aug-08 3e6b
Cl
Title: ocpa complexed cprk (c200s)
Author: c. levy
Keywords: halorespiration, transcriptional regulator, transcription regulation
- 3e6c.pdb.
transcription regulation/dna 15-aug-08 3e6c
Cl
Title: cprk ocpa dna complex
Author: c. levy
Keywords: halorespiration, transcriptional regulator, transcription regulation/dna complex
- 3e6d.pdb.
transcription regulation 15-aug-08 3e6d
Title: crystal structure of cprk c200s
Author: c. levy
Keywords: halorespiration, transcriptional regulator, transcription regulation
- 3e78.pdb.
tpp binding protein 18-aug-08 3e78
Cl Ca
Title: structure determination of the cancer-associated mycoplasma hyorhinis protein mh-p37
Author: k. h. sippel, a. h. robbins, r. reutzel, j. domsic, r. mckenna
Keywords: p37, tpp, cell membrane, lipoprotein, membrane, palmitate, transport, tpp binding protein
- 3e79.pdb.
tpp binding protein 18-aug-08 3e79
Cl I Ca
Title: structure determination of the cancer-associated mycoplasma hyorhinis protein mh-p37
Author: k. h. sippel, a. h. robbins, r. reutzel, j. domsic, r. mckenna
Keywords: p37, tpp, cell membrane, lipoprotein, membrane, palmitate, transport, tpp binding protein
- 3e7l.pdb.
transcription regulator 18-aug-08 3e7l
Zn
Title: crystal structure of sigma54 activator ntrc4's dna binding domain
Author: j. d. batchelor, m. doucleff, c. -j. lee, k. matsubara, s. de carlo, j. heideker, m. m. lamers, j. g. pelton, d. e. wemmer
Keywords: aaa+ atpase, response regulator, transcriptional activator, atp-binding, nucleotide-binding, transcription, transcription regulator
- 3e83.pdb.
membrane protein 19-aug-08 3e83
Cs Na
Title: crystal structure of the the open nak channel pore
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e86.pdb.
membrane protein 19-aug-08 3e86
Cs Na Ca
Title: high resolution crystal structure of the open nak channel pore
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e89.pdb.
membrane protein 19-aug-08 3e89
Cs Na
Title: crystal structure of the the open nak channel-low na+ complex
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e8b.pdb.
membrane protein 19-aug-08 3e8b
Rb
Title: crystal structure of the the open nak channel- rb+ complex
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e8f.pdb.
membrane protein 19-aug-08 3e8f
Ba K
Title: crystal structure of the the open nak channel- k+/ba2+
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e8g.pdb.
membrane protein 19-aug-08 3e8g
Cs Na Ca
Title: crystal structure of the the open nak channel-na+/ca2+ complex
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e8h.pdb.
membrane protein 19-aug-08 3e8h
K
Title: crystal structure of the the open nak channel-k+ complex
Author: y. jiang, a. alam
Keywords: membrane protein, tetrameric cation channel family, 2-transmembrane helix channels, ionic channel
- 3e8t.pdb.
transport protein 20-aug-08 3e8t
Title: crystal structure of epiphyas postvittana takeout 1
Author: c. hamiaux, d. stanley, d. r. greenwood, e. n. baker, r. d. newcomb
Keywords: epiphyas postvittana, transport protein
- 3e8w.pdb.
transport protein 20-aug-08 3e8w
Title: crystal structure of epiphyas postvittana takeout 1
Author: c. hamiaux, d. stanley, d. r. greenwood, e. n. baker, r. d. newcomb
Keywords: epiphyas postvittana, transport protein
- 3ebc.pdb.
hydrolase/dna 27-aug-08 3ebc
Mn
Title: structure of n141a hincii with cognate dna
Author: e. j. little, a. c. babic, n. c. horton
Keywords: mutant, dimerization, r-loop, endonuclease, hydrolase, nuclease, restriction system, hydrolase/dna complex
- 3ebe.pdb.
replication 27-aug-08 3ebe
Zn
Title: crystal structure of xenopus laevis replication initiation factor mcm10 internal domain
Author: e. m. warren, b. f. eichman
Keywords: zinc finger, ccch, dna replication, metal-binding, nucleus, zinc, zinc-finger
- 3ebs.pdb.
oxidoreductase 28-aug-08 3ebs
Fe
Title: human cytochrome p450 2a6 i208s/i300f/g301a/s369g in complex with phenacetin
Author: n. m. devore, e. e. scott
Keywords: p450 2a6, cyp2a13, p450 2a13, monooxygenase, oxidoreducatase, heme, endoplasmic reticulum, iron, membrane, metal-binding, microsome, phenacetin, oxidoreductase, polymorphism
- 3ecp.pdb.
dna recombination/dna 01-sep-08 3ecp
Title: crystal structure of tn5 transposase complexed with 5' phosphorylated transposon end dna
Author: v. a. klenchin
Keywords: ribonuclease h-like motif, protein-dna complex, synaptic complex, dna recombination/dna complex
- 3efw.pdb.
transferase 10-sep-08 3efw
F
Title: structure of auroraa with pyridyl-pyrimidine urea inhibitor
Author: s. f. bellon, v. cee, p. hughes, s. geuns-meyer, d. whittington
Keywords: stk6_human, atp-binding, cell cycle, kinase, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3ega.pdb.
protein binding 10-sep-08 3ega
Se
Title: crystal structure of pellino2 fha domain at 1.8 angstroms resolution
Author: k. m. ferguson, c. lin, k. r. schmitz
Keywords: fha domain, e3 ubiquitin ligase, substrate binding domain, phosphoprotein, protein binding
- 3egb.pdb.
protein binding 10-sep-08 3egb
Title: structure of pellino2 fha domain at 3.3 angstroms resolution.
Author: k. m. ferguson, c. lin, k. r. schmitz
Keywords: fha domain, e3 ubiquitin ligase, substrate binding domain, phosphoprotein, protein binding
- 3ei5.pdb.
transferase 15-sep-08 3ei5
Title: crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with plp-glu: an external aldimine mimic
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei6.pdb.
transferase 15-sep-08 3ei6
Title: crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with plp-dap: an external aldimine mimic
Author: n watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei7.pdb.
transferase 15-sep-08 3ei7
Title: crystal structure of apo-ll-diaminopimelate aminotransferase from arabidopsis thaliana (no plp)
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, arabidopsis thaliana, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei8.pdb.
transferase 15-sep-08 3ei8
Title: crystal structure of k270n variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with ll-dap: external aldimine form
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei9.pdb.
transferase 15-sep-08 3ei9
Title: crystal structure of k270n variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with l-glu: external aldimine form
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3eia.pdb.
transferase 15-sep-08 3eia
Title: crystal structure of k270q variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with l-glu: external aldimine form
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3eib.pdb.
transferase 15-sep-08 3eib
Title: crystal structure of k270n variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, arabidopsis thaliana, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ek5.pdb.
transferase 18-sep-08 3ek5
Title: unique gtp-binding pocket and allostery of ump kinase from a gram-negative phytopathogen bacterium
Author: j. -l. tu, k. -h. chin, a. h. -j. wang, s. -h. chou
Keywords: umpk crystal structure, unique gtp binding site, allosteric regulation, atp-binding, cytoplasm, kinase, nucleotide-binding, pyrimidine biosynthesis, transferase
- 3ek6.pdb.
transferase 18-sep-08 3ek6
Title: unique gtp-binding pocket and allostery of ump kinase from a gram-negative phytopathogen bacterium
Author: j. -l. tu, k. -h. chin, a. h. -j. wang, s. -h. chou
Keywords: umpk crystal structure, unique gtp binding site, allosteric regulation, atp-binding, cytoplasm, kinase, nucleotide-binding, pyrimidine biosynthesis, transferase
- 3ekk.pdb.
transferase 19-sep-08 3ekk
F
Title: insulin receptor kinase complexed with an inhibitor
Author: s. chamberlain, c. atkins, f. deanda, m. dumble, r. gerding, a. groy, s. korenchuk, r. kumar, h. lei, r. mook, g. moorthy, a. redman, j. rowland, p. sabbatini, l. shewchuk
Keywords: phosphoprotein, polymorphism, receptor, transferase, transmembrane, tyrosine-protein kinase
- 3el6.pdb.
lyase 20-sep-08 3el6
Cl
Title: crystal structure of the erythromycin dehydratase
Author: a. t. keatinge-clay
Keywords: acyltransferase, antibiotic biosynthesis, multifunctional enzyme, nadp, phosphopantetheine, transferase, lyase
- 3emh.pdb.
gene regulation 24-sep-08 3emh
Title: structural basis of wdr5-mll interaction
Author: j. j. song, r. e. kingston
Keywords: histone, wd40 repeat, x-ray crystallography, nucleus, phosphoprotein, wd repeat, zinc-finger, gene regulation
- 3ep3.pdb.
lyase 29-sep-08 3ep3
Title: human adometdc d174n mutant with no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3ep4.pdb.
lyase 29-sep-08 3ep4
Title: human adometdc e256q mutant with no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3ep5.pdb.
lyase 29-sep-08 3ep5
Title: human adometdc e178q mutant with no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3ep6.pdb.
lyase 29-sep-08 3ep6
Title: human adometdc d174n mutant complexed with s- adenosylmethionine methyl ester and no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3ep7.pdb.
lyase 29-sep-08 3ep7
Title: human adometdc e256q mutant complexed with s- adenosylmethionine methyl ester and no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3ep8.pdb.
lyase 29-sep-08 3ep8
Title: human adometdc e178q mutant complexed with s- adenosylmethionine methyl ester and no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3ep9.pdb.
lyase 29-sep-08 3ep9
Title: human adometdc with no putrescine bound
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3epa.pdb.
lyase 29-sep-08 3epa
Title: human adometdc e178q mutant complexed with putrescine
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3epb.pdb.
lyase 29-sep-08 3epb
Title: human adometdc e256q mutant complexed with putrescine
Author: s. bale, m. m. lopez, g. i. makhatadze, q. fang, a. e. pegg, s. e. ealick
Keywords: decarboxylase, lyase, pyruvate, s-adenosyl-l-methionine, spermidine biosynthesis, zymogen
- 3epq.pdb.
transferase 29-sep-08 3epq
Zn Se
Title: crystal structure of fructokinase from bacillus subtiliscomplexed with adp
Author: b. nocek, l. volkart, m. cuff, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: scrk, adp binding, psi2, mcsg, structural genomics, protein structure initiative, midwest center for structural genomics, carbohydrate metabolism, kinase, magnesium, metal-binding, transferase, zinc
- 3eqm.pdb.
oxidoreductase 01-oct-08 3eqm
Fe
Title: crystal structure of human placental aromatase cytochrome p450 in complex with androstenedione
Author: d. ghosh
Keywords: cytochrome p450, membrane protein, microsomal, estrogen, biosynthesis of steroid hormone, disease mutation, heme, iron, metal-binding, monooxygenase, oxidoreductase, phosphoprotein, polymorphism
- 3err.pdb.
ligase 03-oct-08 3err
Title: microtubule binding domain from mouse cytoplasmic dynein as a fusion with seryl-trna synthetase
Author: a. p. carter
Keywords: microtubule binding domain, coiled coil, fusion protein, ligase
- 3eto.pdb.
signaling protein 08-oct-08 3eto
Cl Ca
Title: 2 angstrom xray structure of the notch1 negative regulatory region (nrr)
Author: w. r. gordon, s. c. blacklow
Keywords: metal-binding, notch signaling pathway, nucleus, phosphoprotein, polymorphism, receptor, transcription, transcription regulation, transmembrane, signaling protein
- 3eu0.pdb.
hydrolase 09-oct-08 3eu0
Title: crystal structure of the s-nitrosylated cys215 of ptp1b
Author: h. m. chu, a. h. j. wang, y. y. chen, k. t. pan, d. l. wang, k. h. khoo, t. c. meng
Keywords: hydrolase, acetylation, endoplasmic reticulum, membrane, oxidation, phosphoprotein, polymorphism, protein phosphatase
- 3ew1.pdb.
unknown function 14-oct-08 3ew1
Title: crystal structure of rhizavidin
Author: o. livnah, a. meir
Keywords: rhizavidin, biotin, avidin, unknown function
- 3ew2.pdb.
unknown function 14-oct-08 3ew2
Title: crystal structure of rhizavidin-biotin complex
Author: o. livnah, a. meir
Keywords: rhizavidin, biotin, avidin, streptavidin, unknown function
- 3ewb.pdb.
transferase 14-oct-08 3ewb
Se
Title: crystal structure of n-terminal domain of putative 2- isopropylmalate synthase from listeria monocytogenes
Author: u. a. ramagopal, r. toro, m. gilmore, s. hu, m. maletic, l. rodgers, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, nysgxrc
- 3ezh.pdb.
transferase 22-oct-08 3ezh
Se
Title: crystal structure of the e. coli histidine kinase narx sensor domain in complex with nitrate
Author: j. cheung, w. a. hendrickson
Keywords: transferase, transmembrane, two-component regulatory system
- 3ezi.pdb.
transferase 22-oct-08 3ezi
Title: crystal structure of the e. coli histidine kinase narx sensor domain without ligand
Author: j. cheung, w. a. hendrickson
Keywords: cell inner membrane, cell membrane, kinase, membrane, nitrate assimilation, phosphoprotein, transferase, transmembrane, two-component regulatory system
- 3ezq.pdb.
apoptosis 23-oct-08 3ezq
Na
Title: crystal structure of the fas/fadd death domain complex
Author: r. schwarzenbacher, h. robinson, b. stec, s. j. riedl
Keywords: disc, fas, fadd, membrane,receptor, transmembrane
- 3f1e.pdb.
ribosome 27-oct-08 3f1e
Mg Zn
Title: crystal structure of a translation termination complex formed with release factor rf2. this file contains the 30s subunit, rf2, two trna, and mrna molecules of one 70s ribosome. the entire crystal structure contains two 70s ribosomes as described in remark 400.
Author: a. korostelev, h. asahara, l. lancaster, m. laurberg, a. hirschi, h. f. noller
Keywords: ribosome, termination, trna
- 3f1f.pdb.
ribosome 27-oct-08 3f1f
Mg
Title: crystal structure of a translation termination complex formed with release factor rf2. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes as described in remark 400.
Author: a. korostelev, h. asahara, l. lancaster, m. laurberg, a. hirschi, h. f. noller
Keywords: ribosome, termination, trna
- 3f1g.pdb.
ribosome 27-oct-08 3f1g
Mg Zn
Title: crystal structure of a translation termination complex formed with release factor rf2. this file contains the 30s subunit, rf2, two trna, and mrna molecules of the second 70s ribosome. the entire crystal structure contains two 70s ribosomes as described in remark 400.
Author: a. korostelev, h. asahara, l. lancaster, m. lauberg, a. hirschi, h. f. noller
Keywords: ribosome, termination, trna
- 3f1h.pdb.
ribosome 27-oct-08 3f1h
Mg
Title: crystal structure of a translation termination complex formed with release factor rf2. this file contains the 50s subunit of the second 70s ribosome. the entire crystal structure contains two 70s ribosomes as described in remark 400.
Author: a. korostelev, h. asahara, l. lancaster, m. laurberg, a. hirschi, h. f. noller
Keywords: ribosome, termination, trna
- 3f1w.pdb.
replication 28-oct-08 3f1w
Title: crystal structure of a mutant proliferating cell nuclear antigen that blocks translesion synthesis
Author: b. d. freudenthal, s. ramaswamy, m. t. washington
Keywords: dna clamp, dna damage, dna repair, dna replication, dna-binding, nucleus, ubl conjugation
- 3f3a.pdb.
transport protein 30-oct-08 3f3a
Na
Title: crystal structure of leut bound to l-tryptophan and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport protein
- 3f3c.pdb.
transport protein 30-oct-08 3f3c
F Na
Title: crystal structure of leut bound to 4-fluoro-l-phenylalanine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport, transport protein
- 3f3d.pdb.
transport protein 30-oct-08 3f3d
Na
Title: crystal structure of leut bound to l-methionine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport, transport protein
- 3f3e.pdb.
transport protein 30-oct-08 3f3e
Na
Title: crystal structure of leut bound to l-leucine (30 mm) and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, transmembrane, sodium-coupled, transporter, symport, transport, transport protein
- 3f3z.pdb.
transferase, kinase 31-oct-08 3f3z
Title: crystal structure of cryptosporidium parvum calcium dependent protein kinase cgd7_1840 in presence of indirubin e804
Author: a. k. wernimont, j. lew, g. wasney, i. kozieradzki, d. cossar, m. vedadi, a. bochkarev, c. h. arrowsmith, m. sundstrom, j. weigelt, a. m. edwards, r. hui, j. d. artz, m. amani, structural genomics consortium (sgc)
Keywords: structural genomics consortium, atp-binding, calcium, kinase, nucleotide- binding, serine/threonine-protein kinase, transferase, sgc
- 3f48.pdb.
transport protein 31-oct-08 3f48
Na
Title: crystal structure of leut bound to l-alanine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, slc6, occluded, substrate, sodium- coupled, neurotransmitter, transporter, symport, transmembrane, transport, transport protein
- 3f4i.pdb.
transport protein 31-oct-08 3f4i
Na Se
Title: crystal structure of leut bound to l-selenomethionine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: slc6, nss, sodium-couple, neurotransmitter, transporter, symport, transmembrane, transport, transport protein
- 3f4j.pdb.
transport protein 31-oct-08 3f4j
Na
Title: crystal structure of leut bound to glycine and sodium
Author: s. k. singh, c. l. piscitelli, a. yamashita, e. gouaux
Keywords: nss, slc6, sodium-coupled, neurotransmitter, transporter, symport, transmembrane, transport, transport protein
- 3f5c.pdb.
transcription 03-nov-08 3f5c
Title: structure of dax-1:lrh-1 complex
Author: r. j. fletterick, e. p. sablin
Keywords: transcriptional corepressor, regulatory complex, dna-binding, lipid-binding, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc, zinc-finger, cytoplasm, repressor
- 3f66.pdb.
transferase 05-nov-08 3f66
F Na
Title: human c-met kinase in complex with quinoxaline inhibitor
Author: c. meier, t. ceska
Keywords: alternative splicing; atp-binding; chromosomal rearrangement; disease mutation; glycoprotein; kinase; membrane; nucleotide-binding; phosphoprotein; polymorphism; proto-oncogene; receptor; repeat; sig...
- 3f6z.pdb.
hydrolase 07-nov-08 3f6z
Title: crystal structure of pseudomonas aeruginosa mlic in complex with hen egg white lysozyme
Author: n. c. ha, s. yum
Keywords: allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
- 3f75.pdb.
hydrolase 07-nov-08 3f75
Cl Br
Title: activated toxoplasma gondii cathepsin l (tgcpl) in complex with its propeptide
Author: e. t. larson, e. a. merritt, medical structural genomics of pathogenic protozoa (msgpp)
Keywords: msgpp, cysteine protease, parasite, protozoa, hydrolase, thiol protease
- 3fa2.pdb.
protein binding 14-nov-08 3fa2
Title: crystal structure of the brca1 associated ring domain (bard1) tandem brct domains
Author: d. fox 3rd, i. le trong, r. e. stenkamp, r. e. klevit
Keywords: brca1, brct, brca1 c-terminal domain, tandem, ank repeat, disease mutation, metal-binding, nucleus, polymorphism, ubl conjugation, zinc, zinc-finger, protein binding
- 3fb9.pdb.
structural genomics, unknown function 18-nov-08 3fb9
Title: the crystal structure of the protein with unknown function from streptococcus pneumoniae tigr4
Author: r. zhang, h. li, j. abdullah, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, mcsg, psi2, protein structure initiative, midwest center for structural genomics
- 3fbq.pdb.
structural genomics, unknown function 19-nov-08 3fbq
Title: the crystal structure of the conserved domain protein from bacillus anthracis
Author: r. zhang, g. joachimiak, y. kim, p. gornicki, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: bacillus anthracis, structural genomics, psi2, mcsg, protein structure initiative, midwest center for structural genomics, unknown function
- 3fbs.pdb.
oxidoreductase 19-nov-08 3fbs
Mg
Title: the crystal structure of the oxidoreductase from agrobacterium tumefaciens
Author: r. zhang, x. xu, h. zheng, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi2, mcsg, protein structure initiative, midwest center for structural genomics
- 3fbu.pdb.
transferase 19-nov-08 3fbu
Title: the crystal structure of the acetyltransferase (gnat family) from bacillus anthracis
Author: r. zhang, x. xu, h. cui, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: bacillus anthracis, structural genomics, psi2, mcsg, protein structure initiative, midwest center for structural genomics, transferase
- 3fdg.pdb.
hydrolase 25-nov-08 3fdg
Mg
Title: the crystal structure of the dipeptidase ac, metallo peptidase. merops family m19
Author: r. zhang, c. hatzos, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: metallo peptidase. merops family m19, structural genomics, mcsg, psi-2, protein structure initiative, midwest center for structural genomics, hydrolase
- 3fdu.pdb.
isomerase 26-nov-08 3fdu
Title: crystal structure of a putative enoyl-coa hydratase/isomerase from acinetobacter baumannii
Author: j. b. bonanno, m. dickey, k. t. bain, b. k. tang, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: isomerase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3fdw.pdb.
lipid binding protein 26-nov-08 3fdw
Title: crystal structure of a c2 domain from human synaptotagmin- like protein 4
Author: j. b. bonanno, m. rutter, k. t. bain, s. miller, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, nysgxrc, lipid binding protein
- 3feg.pdb.
transferase 29-nov-08 3feg
Mg
Title: crystal structure of human choline kinase beta in complex with phosphorylated hemicholinium-3 and adenosine nucleotide
Author: b. hong, w. tempel, w. m. rabeh, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: choline kinase, structural genomics consortium, sgc, hemicholinium-3, phosphorylation, acetylation, alternative splicing, kinase, phosphoprotein, transferase
- 3feh.pdb.
hydrolase activator 29-nov-08 3feh
Zn
Title: crystal structure of full length centaurin alpha-1
Author: l. shen, y. tong, w. tempel, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: gap, gtpase activation, sgc, cytoplasm, metal-binding, nucleus, phosphoprotein, polymorphism, zinc, zinc-finger, metal binding protein, hydrolase activator
- 3ffh.pdb.
transferase 03-dec-08 3ffh
Se
Title: the crystal structure of histidinol-phosphate aminotransferase from listeria innocua clip11262.
Author: k. tan, m. gu, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: aminotransferase, histidine biosynthesis, pyridoxal phosphate, transferase
- 3ffr.pdb.
transferase 04-dec-08 3ffr
Se
Title: crystal structure of phosphoserine aminotransferase serc (ec 2.6.1.52) (yp_677612.1) from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: aminotransferase class-v
- 3fg5.pdb.
hydrolase 05-dec-08 3fg5
Title: crystal structure determination of a ternary complex of phospholipase a2 with a pentapetide flsyk and ajmaline at 2.5 a resolution
Author: m. kumar, s. kumar, g. vikram, n. singh, m. sinha, a. bhushan, p. kaur, a. srinivasan, s. sharma, t. p. singh
Keywords: pentapeptide, flsyk, ajmaline, ternary complex, hydrolase
- 3fg9.pdb.
structural genomics, unknown function 05-dec-08 3fg9
Mg Se
Title: the crystal structure of an universal stress protein uspa family protein from lactobacillus plantarum wcfs1
Author: k. tan, h. li, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: unknown function
- 3fgb.pdb.
structural genomics, unknown function 05-dec-08 3fgb
Se
Title: crystal structure of the q89zh8_bactn protein from bacteroides thetaiotaomicron. northeast structural genomics consortium target btr289b.
Author: s. m. vorobiev, s. lew, j. seetharaman, d. lee, l. e. foote, c. ciccosanti, h. janjua, r. xiao, t. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
- 3fgp.pdb.
transferase 08-dec-08 3fgp
Title: 2.05 a crystal structure of cysm from mycobacterium tuberculosis - open and closed conformations
Author: d. agren, r. schnell, g. schneider
Keywords: cysm, tuberculosis, cyso, o- phosphoserine, amino-acid biosynthesis, cysteine biosynthesis, pyridoxal phosphate, transferase
- 3fgv.pdb.
structural genomics, unknown function 08-dec-08 3fgv
I Se
Title: crystal structure of protein of unknown function with ferredoxin-like fold (yp_167536.1) from silicibacter pomeroyi dss-3 at 1.30 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: protein of unknown function with ferredoxin- like fold, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3fgx.pdb.
structural genomics, unknown function 08-dec-08 3fgx
Title: structure of uncharacterised protein rbstp2171 from bacillus stearothermophilus
Author: g. minasov, e. filippova, l. shuvalova, s. moy, a. joachimiak, w. f. anderson, midwest center for structural genomics (mcsg)
Keywords: psi-2, protein structure initiative, midwest center for structural genomics, mcsg, structural genomics, unknown function
- 3fgy.pdb.
structural genomics, unknown function 08-dec-08 3fgy
Se
Title: crystal structure of ntf2-like protein of unknown function. (yp_554211.1) from burkholderia xenovorans lb400 at 1.59 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: ntf2-like protein of unknown function., structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3fh0.pdb.
structural genomics, unknown function 08-dec-08 3fh0
Se
Title: crystal structure of putative universal stress protein kpn_01444 - atpase
Author: c. chang, h. li, j. bearden, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: unknown function
- 3fh1.pdb.
structural genomics, unknown function 08-dec-08 3fh1
Cl Se
Title: crystal structure of ntf2-like protein of unknown function (np_108339.1) from mesorhizobium loti at 1.60 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: ntf2-like protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3fh2.pdb.
hydrolase 08-dec-08 3fh2
Title: the crystal structure of the probable atp-dependent protease (heat shock protein) from corynebacterium glutamicum
Author: r. zhang, h. li, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi2, mcsg, protein structure initiative, midwest center for structural genomics, atp- binding, chaperone, hydrolase, nucleotide-binding, protease, stress response
- 3fhl.pdb.
oxidoreductase 09-dec-08 3fhl
Mg
Title: crystal structure of a putative oxidoreductase from bacteroides fragilis nctc 9343
Author: y. patskovsky, u. ramagopal, r. toro, m. gilmore, s. miller, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: nad-binding domain, psi-2, nysgxrc, structural genomics, protein structure initiative, new york sgx research center for structural genomics
- 3fhx.pdb.
transferase 10-dec-08 3fhx
Mg Na
Title: crystal structure of d235a mutant of human pyridoxal kinase
Author: m. k. safo, a. k. gandhi, f. n. musayev, m. ghatge, m. l. di salvo, v. schirch
Keywords: atp complex, metal ion, transferase, acetylation, alternative splicing, atp-binding, cytoplasm, kinase, metal-binding, nucleotide-binding, zinc
- 3fhy.pdb.
transferase 10-dec-08 3fhy
Mg Na
Title: crystal structure of d235n mutant of human pyridoxal kinase
Author: m. k. safo, a. k. gandhi, f. n. musayev, m. ghatge, m. l. di salvo, v. schirch
Keywords: atp complex, metal ion, transferase, acetylation, alternative splicing, atp-binding, cytoplasm, kinase, metal-binding, nucleotide-binding, zinc
- 3fi9.pdb.
oxidoreductase 11-dec-08 3fi9
Title: crystal structure of malate dehydrogenase from porphyromonas gingivalis
Author: j. b. bonanno, j. freeman, k. t. bain, s. miller, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: oxidoreductase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3fig.pdb.
transferase 11-dec-08 3fig
Zn
Title: crystal structure of leucine-bound leua from mycobacterium tuberculosis
Author: n. koon, c. j. squire, e. n. baker
Keywords: amino-acid biosynthesis, branched-chain amino acid biosynthesis, leucine biosynthesis, transferase
- 3fk2.pdb.
signaling protein, hydrolase activator 15-dec-08 3fk2
Title: crystal structure of the rhogap domain of human glucocorticoid receptor dna-binding factor 1
Author: l. nedyalkova, y. tong, w. tempel, p. loppnau, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: signaling protein, hydrolase activator
- 3fkc.pdb.
transcription 16-dec-08 3fkc
Title: crystal structure of human zinc finger and btb domain containing 33
Author: p. filippakopoulos, a. bullock, t. keates, n. burgess-brown, j. muniz, f. von delft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, s. knapp, structural genomics consortium (sgc)
Keywords: transcription, transcription regulation, wnt signaling pathway, zinc, zinc-finger
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Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS