Recent PDB releases or updates: week of 19 December 2008

• 1nsh.pdb. metal binding protein 27-jan-03 1nsh He Hg (NMR, 19 structures)
  Title: solution structure of rabbit apo-s100a11 (19 models)
  Author: a. c. dempsey, m. p. walsh, g. s. shaw
  Keywords: ef hand, helix-loop-helix, s100a11
  
• 1q91.pdb. hydrolase 22-aug-03 1q91 Mg
  Title: crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor dpb-t
  Author: a. rinaldo-matthis, c. rampazzo, j. balzarini, p. reichard, v. bianchi, p. nordlund
  
  
• 1xm6.pdb. hydrolase 01-oct-04 1xm6 Mg Zn
  Title: catalytic domain of human phosphodiesterase 4b in complex with (r)-mesopram
  Author: g. l. card, b. p. england, y. suzuki, d. fong, b. powell, b. lee, c. luu, m. tabrizizad, s. gillette, p. n. ibrahim, d. r. artis, g. bollag, m. v. milburn, s. -h. kim, j. schlessinger, k. y. j. zhang
  Keywords: (r)-mesopram
  
• 1y9x.pdb. dna binding protein 16-dec-04 1y9x He Hg (NMR, 20 structures)
  Title: solution structure of archaeon dna-binding protein ssh10b
  Author: q. cui, y. tong, j. wang
  Keywords: archaea
  
• 2aj2.pdb. unknown function 01-aug-05 2aj2 Se
  Title: x-ray crystal structure of protein vc0467 from vibrio cholerae. northeast structural genomics consortium target vcr8.
  Author: a. p. kuzin, m. abashidze, s. m. vorobiev, t. acton, r. xiao, k. conover, l. -c. ma, r. kellie, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: nesg, vcr8, q9kup8, structural genomics, psi, protein structure initiative, northeast structural genomics consortium
  
• 2fjm.pdb. hydrolase 03-jan-06 2fjm Cl Mg F
  Title: the structure of phosphotyrosine phosphatase 1b in complex with compound 2
  Author: e. asanta-appiah, s. b. patel, c. desponts, j. taylor, c. lau, c. dufresne, m. therien, r. friesen, j. w. becker, y. leblanc, g. scapin
  Keywords: secondary binding site, selectivity
  
• 2fjn.pdb. hydrolase 03-jan-06 2fjn Cl F
  Title: the structure of phosphotyrosine phosphatase 1b in complex with compound 2
  Author: e. asante-appiah, s. b. patel, c. desponts, j. taylor, c. lau, c. dufresne, m. therien, r. friesen, j. w. becker, y. leblanc, b. p. kennedy, g. scapin
  Keywords: secondary binding site, selectivity
  
• 2jkj.pdb. cell adhesion 28-aug-08 2jkj Cl
  Title: drae adhesin in complex with chloramphenicol succinate
  Author: d. m. pettigrew, p. roversi, s. g. davies, a. j. russell, s. m. lea
  Keywords: upec, drae, daec, adhesin, fimbrium, haemagglutinin, cell projection, fimbrial adhesin, chloramphenicol succinate
  
• 2jkl.pdb. cell adhesion 28-aug-08 2jkl Cl Br
  Title: drae adhesin in complex with bromamphenicol
  Author: d. m. pettigrew, p. roversi, s. g. davies, a. j. russell, s. m. lea
  Keywords: bromamphenicol, cell projection, fimbrial adhesin, upec, drae, daec, adhesin, fimbrium, haemagglutinin
  
• 2jkn.pdb. cell adhesion 28-aug-08 2jkn Cl
  Title: drae adhesin in complex with chloramphenicol succinate ( trigonal form)
  Author: d. m. pettigrew, p. roversi, s. g. davies, a. j. russell, s. m. lea
  Keywords: upec, drae, daec, adhesin, fimbrium, haemagglutinin, cell projection, fimbrial adhesin, chloramphenicol succinate
  
• 2jl0.pdb. oxidoreductase 02-sep-08 2jl0 Cu Zn
  Title: structure of the n90s mutant of nitrite reductase from alcaligenes xylosoxidans
  Author: m. a. hough, r. r. eady, s. s. hasnain
  Keywords: oxidoreductase, n90s mutant, proton channel, denitrification
  
• 2jl3.pdb. oxidoreductase 02-sep-08 2jl3 Cu Zn
  Title: crystal structure of the cu metallated h254f mutant of alcaligenes xylosoxidans cu nitrite reductase
  Author: m. a. hough, r. r. eady, s. s. hasnain
  Keywords: nitrite reductase, oxidoreductase, catalysis, h254f mutant, proton channel
  
• 2jla.pdb. transferase 05-sep-08 2jla Cl Mn Se
  Title: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl- 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - semet protein
  Author: a. dawson, p. k. fyfe, w. n. hunter
  Keywords: manganese, magnesium, transferase, thiamine diphosphate cofactor, thiamine pyrophosphate, menaquinone biosynthesis, metal-binding, enzyme mechanism
  
• 2jlc.pdb. transferase 08-sep-08 2jlc Mn
  Title: crystal structure of e.coli mend, 2-succinyl-5-enolpyruvyl- 6-hydroxy-3-cyclohexadiene-1-carboxylate synthase - native protein
  Author: a. dawson, p. k. fyfe, w. n. hunter
  Keywords: manganese, magnesium, transferase, metal-binding, thiamine diphosphate cofactor, enzyme mechanism, thiamine pyrophosphate
  
• 2k3g.pdb. signaling protein 07-may-08 2k3g He Hg (solution NMR)
  Title: nmr structure analysis of a bmp receptor
  Author: j. klages, a. kotzsch, t. mueller, h. kessler
  Keywords: serine/threonine-protein kinase, transferase, transmembrane, signaling protein
  
• 2k6t.pdb. hormone 23-jul-08 2k6t He Hg (solution NMR)
  Title: solution structure of the relaxin-like factor
  Author: e. e. bullesbach, m. a. s. hass, m. r. jensen, d. f. hansen, s. m. kristensen, c. schwabe, j. j. led
  Keywords: cleavage on pair of basic residues, disease mutation, hormone, polymorphism, secreted
  
• 2k6u.pdb. hormone 24-jul-08 2k6u He Hg (solution NMR)
  Title: the solution structure of a conformationally restricted fully active derivative of the human relaxin-like factor (rlf)
  Author: e. e. bullesbach, m. a. s. hass, m. r. jensen, d. f. hansen, s. m. kristensen, c. schwabe, j. j. led
  Keywords: cross-link, isopeptide, cleavage on pair of basic residues, disease mutation, hormone, polymorphism, secreted
  
• 2k8d.pdb. oxidoreductase 05-sep-08 2k8d He Hg Zn (solution NMR)
  Title: solution structure of a zinc-binding methionine sulfoxide reductase
  Author: m. carella, o. ohlenschlager, m. gorlach
  Keywords: thermophilic, zn binding, reductase, metal-binding, oxidoreductase, zinc
  
• 2k95.pdb. ribonucleic acid 29-sep-08 2k95 Ho (solution NMR)
  Title: solution structure of the wild-type p2b-p3 pseudoknot of human telomerase rna
  Author: n. -k. kim, q. zhang, j. zhou, c. a. theimer, r. d. peterson, j. feigon
  Keywords: rna, pseudoknot, triple helix, bulge, rdc
  
• 2k96.pdb. ribonucleic acid 29-sep-08 2k96 Ho (solution NMR)
  Title: solution structure of the rdc-refined p2b-p3 pseudoknot from human telomerase rna (delta u177)
  Author: n. -k. kim, q. zhang, j. zhou, c. a. theimer, r. d. peterson, j. feigon
  Keywords: rna, triple helix, rdc
  
• 2kat.pdb. structural genomics, unknown function 14-nov-08 2kat He Hg (solution NMR)
  Title: solution structure of protein bpp2914 from bordetella parapertussis. northeast structural genomics consortium target bpr206
  Author: y. wu, j. l. mills, d. wang, m. jiang, e. l. foote, r. xiao, b. sathyamoorthy, d. sukumaran, r. nair, j. k. everett, g. swapna, t. b. acton, b. rost, g. t. montelione, t. szyperski, northeast structural genomics consortium (nesg)
  Keywords: nmr, structure, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
  
• 2kaz.pdb. deoxyribonucleic acid 18-nov-08 2kaz Ho K (solution NMR)
  Title: folding topology of a bimolecular dna quadruplex containing a stable mini-hairpin motif within the connecting loop
  Author: g. d. balkwill, t. p. garner, h. e. l. williams, m. s. searle
  Keywords: dna hairpins, dna, quadruplex
  
• 2pfd.pdb. transferase, lyase 04-apr-07 2pfd Se
  Title: anisotropically refined structure of ftcd
  Author: b. k. poon, x. chen, m. lu, f. a. quiocho, q. wang, j. ma
  Keywords: transferase, lyase
  
• 2qkn.pdb. oxidoreductase 11-jul-07 2qkn Cl
  Title: crystal structure of maize cytokinin oxidase/dehydrogenase complexed with phenylurea inhibitor cppu
  Author: p. briozzo
  Keywords: flavoprotein, fad, phenyl- urea inhibitor, oxidoreductase
  
• 2qpm.pdb. oxidoreductase 24-jul-07 2qpm Cl
  Title: leu492ala mutant of maize cytokinin oxidase/dehydrogenase complexed with benzylurea inhibitor cpbu
  Author: p. briozzo
  Keywords: flavoprotein, fad, phenyl- urea inhibitor, oxidoreductase
  
• 2r38.pdb. hydrolase 29-aug-07 2r38 Cl
  Title: i84v hiv-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor
  Author: j. boettcher, a. blum, a. heine, w. e. diederich, g. klebe
  Keywords: aspartyl protease, hydrolase, protease
  
• 2r3t.pdb. hydrolase 30-aug-07 2r3t Cl
  Title: i50v hiv-1 protease mutant in complex with a carbamoyl decorated pyrrolidine-based inhibitor
  Author: j. boettcher, a. blum, a. heine, w. e. diederich, g. klebe
  Keywords: aspartyl protease, hydrolase, protease
  
• 2r3w.pdb. hydrolase 30-aug-07 2r3w Cl
  Title: i84v hiv-1 protease in complex with a amino decorated pyrrolidine-based inhibitor
  Author: j. boettcher, a. blum, a. heine, w. e. diederich, g. klebe
  Keywords: hydrolase
  
• 2r43.pdb. hydrolase 30-aug-07 2r43 Cl
  Title: i50v hiv-1 protease in complex with an amino decorated pyrrolidine-based inhibitor
  Author: j. boettcher, a. blum, a. heine, w. e. diederich, g. klebe
  Keywords: hydrolase
  
• 2r4l.pdb. transport protein 31-aug-07 2r4l
  Title: crystal structure of the long-chain fatty acid transporter fadl mutant p34a
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein, lipid transport, phage recognition, transmembrane, transport, transport protein
  
• 2r4n.pdb. transport protein 31-aug-07 2r4n
  Title: crystal structure of the long-chain fatty acid transporter fadl mutant n33a
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein, lipid transport, phage recognition, transmembrane, transport, transport protein
  
• 2r4o.pdb. transport protein 31-aug-07 2r4o
  Title: crystal structure of the long-chain fatty acid transporter fadl mutant delta npa
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein, lipid transport, phage recognition, transmembrane, transport, transport protein
  
• 2r4p.pdb. transport protein 31-aug-07 2r4p
  Title: crystal structure of the long-chain fatty acid transporter fadl mutant g212e
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein, lipid transport, phage recognition, transmembrane, transport, transport protein
  
• 2r88.pdb. transport protein 10-sep-07 2r88
  Title: crystal structure of the long-chain fatty acid transporter fadl mutant delta s3 kink
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein, lipid transport, phage recognition, transmembrane, transport, transport protein
  
• 2v4s.pdb. transferase 26-sep-08 2v4s Mg
  Title: y-family dna polymerase dpo4 bypassing n2-naphthyl-guanine adduct in syn orientation
  Author: r. l. eoff, h. zhang, m. egli, f. p. guengerich
  Keywords: dna, dpo4, adduct, n2-alkyl, cytoplasm, magnesium, transferase, metal-binding, mutator protein, dna replication, nucleotidyltransferase, polymerase, dna damage, dna repair, dna-binding
  
• 2v4t.pdb. transferase 26-sep-08 2v4t Mg
  Title: y-family dna polymerase dpo4 bypassing n2-naphthyl-guanine adduct in anti orientation
  Author: r. l. eoff, h. zhang, m. egli, f. p. guengerich
  Keywords: dna, dpo4, adduct, n2-alkyl, cytoplasm, magnesium, transferase, metal-binding, mutator protein, dna replication, nucleotidyltransferase, polymerase, dna damage, dna repair, dna-binding
  
• 2v5e.pdb. receptor/glycoprotein complex 03-oct-08 2v5e
  Title: the structure of the gdnf\:coreceptor complex\: insights into ret signalling and heparin binding.
  Author: v. parkash, v. -m. leppanen, h. virtanen, j. -m. jurvansuu, m. m. bespalov, y. a. sidorova, p. runeberg-roos, m. saarma, a. goldman
  Keywords: cleavage on pair of basic residues
  
• 2vf1.pdb. virus 29-oct-07 2vf1
  Title: x-ray crystallographic structure of the picobirnavirus capsid
  Author: s. duquerroy, b. da costa, a. vigouroux, j. lepault, j. navaza, b. delmas, f. a. rey
  Keywords: viral protein, picobirnavirus, capsid protein, triacontahedron, virus
  
• 2vf7.pdb. dna-binding protein 31-oct-07 2vf7 Mg Zn
  Title: crystal structure of uvra2 from deinococcus radiodurans
  Author: j. timmins, e. gordon, s. caria, g. leonard, m. s. kuo, v. monchois, s. mcsweeney
  Keywords: abc protein dna-binding protein
  
• 2vf8.pdb. dna-binding protein 31-oct-07 2vf8 Zn
  Title: crystal structure of uvra2 from deinococcus radiodurans
  Author: j. timmins, e. gordon, s. caria, g. leonard, m. s. kuo, v. monchois, s. mcsweeney
  Keywords: zinc-binding domain, sos response, metal-binding, excision nuclease, zinc-finger, atp-binding, dna-binding, dna excision, zinc, cytoplasm, dna damage, dna repair, abc protein, dna-binding protein
  
• 2vfm.pdb. hydrolase 05-nov-07 2vfm Ca
  Title: low temperature structure of p22 tailspike protein fragment (109-666)
  Author: m. becker, j. j. mueller, u. heinemann, r. seckler
  Keywords: salmonella bacteriophage p22, protein folding, protein stability, right-handed parallel beta-helix, hydrolase, late protein, endoglycosidase
  
• 2vfn.pdb. hydrolase 05-nov-07 2vfn Ca
  Title: low temperature structure of p22 tailspike protein fragment (109-666), mutant v125a
  Author: m. becker, j. j. mueller, u. heinemann, r. seckler
  Keywords: salmonella bacteriophage p22, protein folding, protein stability, right-handed parallel beta-helix, hydrolase, late protein, endoglycosidase
  
• 2vfo.pdb. hydrolase 05-nov-07 2vfo Ca
  Title: low temperature structure of p22 tailspike protein fragment (109-666), mutant v125l
  Author: m. becker, j. j. mueller, u. heinemann, r. seckler
  Keywords: salmonella bacteriophage p22, protein folding, protein stability, right-handed parallel beta-helix, hydrolase, late protein, endoglycosidase
  
• 2vfp.pdb. hydrolase 05-nov-07 2vfp Ca
  Title: low temperature structure of p22 tailspike protein fragment (109-666), mutant v349l
  Author: m. becker, j. j. mueller, u. heinemann, r. seckler
  Keywords: salmonella bacteriophage p22, protein folding, protein stability, right-handed parallel beta-helix, hydrolase, late protein, endoglycosidase
  
• 2vfq.pdb. hydrolase 05-nov-07 2vfq Ca
  Title: low temperature structure of p22 tailspike protein fragment (109-666), mutant v450a
  Author: m. becker, j. j. mueller, u. heinemann, r. seckler
  Keywords: salmonella bacteriophage p22, protein folding, protein stability, right-handed parallel beta-helix, hydrolase, late protein, endoglycosidase
  
• 2vh6.pdb. hydrolase 19-nov-07 2vh6 Cl F
  Title: structure and property based design of factor xa inhibitors: pyrrolidin-2-ones with biaryl p4 motifs
  Author: r. j. young, a. d. borthwick, d. brown, c. l. burns-kurtis, m. campbell, c. chan, m. charbaut, c. w. chung, m. a. convery, h. a. kelly, n. p. king, s. kleanthous, a. m. mason, a. j. pateman, a. n. patikis, i. l. pinto, d. r. pollard, s. senger, g. p. shah, j. r. toomey, n. s. watson, h. e. weston
  Keywords: egf-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation, gamma-carboxyglutamic acid, calcium, zymogen, complex, protease, hydrolase, cleavage on pair of basic residues
  
• 2vjg.pdb. allergen 10-dec-07 2vjg
  Title: crystal structure of the major carrot allergen dau c 1
  Author: z. markovic-housley, a. basle, s. padavattan, k. hoffmann-sommergruber, t. schirmer
  Keywords: pathogenesis-related protein, dau c 1, allergen, plant defense
  
• 2vkm.pdb. hydrolase 04-dec-07 2vkm
  Title: crystal structure of grl-8234 bound to bace (beta-secretase)
  Author: l. hong, j. tang, a. k. ghosh
  Keywords: aspartyl protease, aspartic protease, glycoprotein, transmembrane, beta secretase, app, bace, a-beta, x- ray, zymogen, membrane, protease, memapsin, hydrolase, alzheimer, drug design
  
• 2vmn.pdb. transferase 29-jan-08 2vmn
  Title: crystal structure of n341absshmt internal aldimine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, n341a, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmo.pdb. transferase 29-jan-08 2vmo
  Title: crystal structure of n341absshmt gly external aldimine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, n341a, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmp.pdb. transferase 29-jan-08 2vmp
  Title: crystal structure of n341absshmt l-ser external aldimine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, n341a, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmq.pdb. transferase 29-jan-08 2vmq
  Title: structure of n341absshmt crystallized in the presence of l- allo-thr
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, n341a, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmr.pdb. transferase 29-jan-08 2vmr
  Title: crystal structure of y60absshmt internal aldimine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, y60a, shmt, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vms.pdb. transferase 29-jan-08 2vms
  Title: crystal structure of y60absshmt crystallized in the presence of glycine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, y60a, shmt, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmt.pdb. transferase 29-jan-08 2vmt
  Title: crystal structure of y60absshmt l-ser external aldimine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, y60a, shmt, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmu.pdb. transferase 29-jan-08 2vmu
  Title: crystal structure of y60absshmt crystallized in the presence of l-allo-thr
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, y60a, shmt, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmv.pdb. transferase 29-jan-08 2vmv
  Title: crystal structure of f351gbsshmt internal aldimine
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, f351g, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmw.pdb. transferase 29-jan-08 2vmw
  Title: crystal structure of f351gbsshmt in complex with l-ser
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, f351g, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmx.pdb. transferase 29-jan-08 2vmx
  Title: crystal structure of f351gbsshmt in complex with l-allo-thr
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, f351g, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vmy.pdb. transferase 29-jan-08 2vmy
  Title: crystal structure of f351gbsshmt in complex with gly and fthf
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: plp-dependent enzymes, serine hydroxymethyltransferase, ternary complex, pyridoxal phosphate, shmt, fthf, f351g, transferase, folate binding
  
• 2vmz.pdb. transferase 29-jan-08 2vmz
  Title: crystal structure of f351gbsshmt in complex with gly
  Author: v. rajaram, v. r. pai, s. bisht, b. s. bhavani, n. appaji rao, h. s. savithri, m. r. n. murthy
  Keywords: serine hydroxymethyltransferase, shmt, f351g, transferase, folate binding, pyridoxal phosphate, one-carbon metabolism
  
• 2vpl.pdb. translation 01-mar-08 2vpl K
  Title: the structure of the complex between the first domain of l1 protein from thermus thermophilus and mrna from methanococcus jannaschii
  Author: v. kljashtorny, s. tishchenko, n. nevskaya, s. nikonov, m. garber
  Keywords: rna/protein complex, translation regulation, translation, repressor, rna-binding, trna-binding, rrna-binding
  
• 2vtx.pdb. nuclear protein 16-may-08 2vtx
  Title: activation of nucleoplasmin, an oligomeric histone chaperone, challenges its stability
  Author: s. g. taneva, i. g. munoz, g. franco, j. falces, i. arregi, a. muga, g. montoya, m. a. urbaneja, s. banuelos
  Keywords: phosphorylation, protein stability, oligomeric protein, nuclear protein
  
• 2vvl.pdb. oxidoreductase 10-jun-08 2vvl
  Title: the structure of mao-n-d3, a variant of monoamine oxidase from aspergillus niger.
  Author: k. e. atkin, s. hart, j. p. turkenburg, a. m. brzozowski, g. j. grogan
  Keywords: aspergillus niger, fad, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant
  
• 2vvm.pdb. oxidoreductase 10-jun-08 2vvm
  Title: the structure of mao-n-d5, a variant of monoamine oxidase from aspergillus niger.
  Author: k. e. atkin, s. hart, j. p. turkenburg, a. m. brzozowski, g. j. grogan
  Keywords: aspergillus niger, fad, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant
  
• 2vvs.pdb. hydrolase 11-jun-08 2vvs
  Title: btgh84 structure in complex with pugnac
  Author: m. s. macauley, a. bubb, c. martinez-fleites, g. j. davies, d. j. vocadlo
  Keywords: inhibitor, glycoside hydrolase, o-glcnac
  
• 2vwe.pdb. immune system 23-jun-08 2vwe
  Title: crystal structure of vascular endothelial growth factor-b in complex with a neutralizing antibody fab fragment
  Author: p. leonard, p. d. scotney, t. jabeen, s. iyer, l. j. fabri, a. d. nash, k. r. acharya
  Keywords: glycoprotein, cysteine-knot, growth factor, vegf-b, mitogen, secreted, angiogenesis, neutralizing antibody, heparin-binding, alternative splicing
  
• 2vz2.pdb. oxidoreductase 29-jul-08 2vz2 F
  Title: human mao b in complex with mofegiline
  Author: d. bonivento, a. mattevi
  Keywords: inhibitor binding, flavoprotein, mitochondrion, transmembrane, human monoamine oxidase, mitochondrion outer membrane, fad, flavin, membrane, mofegiline, acetylation
  
• 2w00.pdb. hydrolase 08-aug-08 2w00 Mg Se
  Title: crystal structure of the hsdr subunit of the ecor124i restriction enzyme in complex with atp
  Author: m. lapkouski, s. panjikar, i. kuta smatanova, r. ettrich, e. csefalvay
  Keywords: dna-binding, restriction system, plasmid, helicase, hydrolase, r.ecor124i, nucleotide-binding, type i restriction-modification enzyme
  
• 2w0p.pdb. cell adhesion 20-aug-08 2w0p
  Title: crystal structure of the filamin a repeat 21 complexed with the migfilin peptide
  Author: s. ruskamo, j. ylanne
  Keywords: cell adhesion, metal-binding, cytoplasm, lim domain, cell shape, acetylation
  
• 2w0q.pdb. oxidoreductase 20-aug-08 2w0q Cu Ca Xe
  Title: e. coli copper amine oxidase in complex with xenon
  Author: p. pirrat, m. a. smith, a. r. pearson, m. j. mcpherson, s. e. v. phillips
  Keywords: xenon, copper, e. coli, calcium, periplasm, oxygen entry, metal-binding, oxidoreductase, copper amine oxidase
  
• 2w1v.pdb. hydrolase 21-oct-08 2w1v
  Title: crystal structure of mouse nitrilase-2 at 1.4a resolution
  Author: k. t. barglow, k. s. saikatendu, r. c. stevens, b. f. cravatt
  Keywords: nitrilase
  
• 2w22.pdb. hydrolase 23-oct-08 2w22 Zn Ca
  Title: activation mechanism of bacterial thermoalkalophilic lipases
  Author: c. carrasco-lopez, c. godoy, b. de las rivas, g. fernandez-lorente, j. m. palomo, j. m. guisan, r. fernandez-lafuente, j. a. hermoso
  Keywords: hydrolase, open conformation, activation mechanism
  
• 2zff.pdb. blood clotting/hydrolase inhibitor 04-jan-08 2zff Na
  Title: exploring thrombin s1-pocket
  Author: b. baum, a. heine, g. klebe
  Keywords: zymogen
  
• 2zfp.pdb. blood clotting/hydrolase inhibitor 08-jan-08 2zfp Cl Na
  Title: thrombin inibition
  Author: b. baum, a. heine, g. klebe
  Keywords: zymogen
  
• 2zgb.pdb. blood clotting/hydrolase inhibitor 21-jan-08 2zgb Cl Na
  Title: thrombin inhibition
  Author: b. baum, a. heine, g. klebe
  Keywords: serine protease, zymogen
  
• 2zgx.pdb. blood clotting/hydrolase inhibitor 28-jan-08 2zgx Na
  Title: thrombin inhibition
  Author: b. baum, a. heine, g. klebe
  Keywords: serine protease, zymogen, protease inhibitor, serine protease inhibitor, sulfation
  
• 2zpb.pdb. lyase 09-jul-08 2zpb Mg Fe
  Title: nitrosylated fe-type nitrile hydratase
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpe.pdb. lyase 10-jul-08 2zpe Mg Fe
  Title: nitrosylated fe-type nitrile hydratase with tert- butylisonitrile
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpf.pdb. lyase 11-jul-08 2zpf Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 18min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpg.pdb. lyase 11-jul-08 2zpg Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 120min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zph.pdb. lyase 11-jul-08 2zph Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 340min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 2zpi.pdb. lyase 11-jul-08 2zpi Mg Fe
  Title: complex of fe-type nitrile hydratase with tert- butylisonitrile, photo-activated for 440min at 293k
  Author: k. hashimoto, h. suzuki, k. taniguchi, t. noguchi, m. yohda, m. odaka
  Keywords: iron, metal-binding, oxidation
  
• 3b9k.pdb. immune system 05-nov-07 3b9k
  Title: crystal structure of cd8alpha-beta in complex with yts 156.7 fab
  Author: d. shore, i. a. wilson
  Keywords: v-set, igsf dimer, alternative splicing, glycoprotein, immune response, membrane, transmembrane, polymorphism, immune system
  
• 3bgk.pdb. unknown function 26-nov-07 3bgk K Se
  Title: the crystal structure of hypothetic protein smu.573 from streptococcus mutans
  Author: y. h. liang, y. f. zhou, c. yang, x. d. su
  Keywords: unknown function
  
• 3bjg.pdb. hydrolase 04-dec-07 3bjg
  Title: structure of rivax: a human ricin vaccine
  Author: p. m. legler, c. b. millard
  Keywords: toxin, ribosome inactivating protein, vaccine, glycoprotein, hydrolase, lectin, plant defense, protein synthesis inhibitor
  
• 3bks.pdb. lipid binding protein 07-dec-07 3bks
  Title: crystal structure of sterol carrier protein-2 like-3 (scp2- l3) from aedes aegypti
  Author: d. h. dyer, q. lan, k. t. forest
  Keywords: mosquito, fatty acid, palmitic acid, cholesterol, lipid binding protein
  
• 3bl3.pdb. transferase 10-dec-07 3bl3 Zn
  Title: trna guanine transglycosylase v233g mutant apo structure
  Author: n. tidten, a. heine, k. reuter, g. klebe
  Keywords: eukaryotic bindig pocket model system, glycosyltransferase, metal-binding, queuosine biosynthesis, transferase, trna processing, zinc
  
• 3bl7.pdb. hydrolase 10-dec-07 3bl7 F
  Title: dcps bound to inhibitor dg156844
  Author: b. l. staker
  Keywords: dcps, ligand complex, cytoplasm, hydrolase, nonsense-mediated mrna decay, nucleus, polymorphism
  
• 3bl9.pdb. hydrolase 10-dec-07 3bl9 Cl
  Title: dcps bound to inhibitor dg157493
  Author: b. l. staker
  Keywords: dcps, ligand complex, cytoplasm, hydrolase, nonsense-mediated mrna decay, nucleus, polymorphism
  
• 3bla.pdb. hydrolase 10-dec-07 3bla Cl
  Title: dcps bound to inhibitor dg153249
  Author: b. l. staker
  Keywords: dcps, ligand complex, cytoplasm, hydrolase, nonsense-mediated mrna decay, nucleus, polymorphism
  
• 3bld.pdb. transferase 11-dec-07 3bld Zn
  Title: trna guanine transglycosylase v233g mutant preq1 complex structure
  Author: n. tidten, a. heine, k. reuter, g. klebe
  Keywords: preq1, glycosyltransferase, metal-binding, queuosine biosynthesis, transferase, trna processing, zinc
  
• 3bll.pdb. transferase 11-dec-07 3bll Zn
  Title: tgt mutant in complex with boc-preq1
  Author: n. tidten, a. heine, k. reuter, g. klebe
  Keywords: boc-preq1, glycosyltransferase, metal-binding, queuosine biosynthesis, transferase, trna processing, zinc
  
• 3blo.pdb. transferase 11-dec-07 3blo Zn
  Title: tgt mutant in complex with queuine
  Author: n. tidten, a. heine, k. reuter, g. klebe
  Keywords: queuine, glycosyltransferase, metal-binding, queuosine biosynthesis, transferase, trna processing, zinc
  
• 3bmb.pdb. rna binding protein 12-dec-07 3bmb Cl
  Title: crystal structure of a new rna polymerase interacting protein
  Author: s. a. darst, v. lamour
  Keywords: elongation factor, anti-gre factor, rna binding protein
  
• 3bmc.pdb. oxidoreductase 13-dec-07 3bmc
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and substrate (folate)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, substrate, folate, oxidoreductase
  
• 3bmd.pdb. oxidoreductase 13-dec-07 3bmd
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor dx1
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bme.pdb. oxidoreductase 13-dec-07 3bme
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound dx2)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmf.pdb. oxidoreductase 13-dec-07 3bmf
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor dx3
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmg.pdb. oxidoreductase 13-dec-07 3bmg
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound dx4)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmh.pdb. oxidoreductase 13-dec-07 3bmh
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound dx6)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmi.pdb. oxidoreductase 13-dec-07 3bmi Br
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ju2)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmj.pdb. oxidoreductase 13-dec-07 3bmj
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound dx7)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmk.pdb. oxidoreductase 13-dec-07 3bmk
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound dx8)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bml.pdb. oxidoreductase 13-dec-07 3bml
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ax1)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmm.pdb. oxidoreductase 13-dec-07 3bmm
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ax2)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmn.pdb. oxidoreductase 13-dec-07 3bmn
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ax3)
  Author: v. p. martini, j. iulek, l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmo.pdb. oxidoreductase 13-dec-07 3bmo Na
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ax4)
  Author: v. p. martini, j. iulek, w. n. hunter, l. b. tulloch
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmq.pdb. oxidoreductase 13-dec-07 3bmq
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ax5)
  Author: v. p. martini, j. iulek, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmr.pdb. oxidoreductase 13-dec-07 3bmr
  Title: structure of pteridine reductase 1 (ptr1) from trypanosoma brucei in ternary complex with cofactor (nadp+) and inhibitor (compound ax6)
  Author: l. b. tulloch, w. n. hunter
  Keywords: ptr1, trypanosoma brucei, short chain dehydrogenase, inhibitor, oxidoreductase
  
• 3bmx.pdb. hydrolase 13-dec-07 3bmx Na
  Title: beta-n-hexosaminidase (ybbd) from bacillus subtilis
  Author: s. fischer
  Keywords: bacillus subtilis, tim barrel, glycosidase, hydrolase, lipoprotein, membrane, palmitate
  
• 3bnz.pdb. transferase 15-dec-07 3bnz
  Title: crystal structure of thymidylate synthase ternary complex with dump and 8a inhibitor
  Author: r. leone, l. cancian, r. luciani, s. ferrari, m. p. costi, s. mangani
  Keywords: cytoplasm, methyltransferase, nucleotide biosynthesis, transferase
  
• 3bow.pdb. hydrolase/hydrolase inhibitor 17-dec-07 3bow Ca
  Title: structure of m-calpain in complex with calpastatin
  Author: r. a. hanna, r. l. campbell, p. l. davies
  Keywords: hydrolase/hydrolase inhibitor complex
  
• 3bxz.pdb. transport protein 15-jan-08 3bxz Mg
  Title: crystal structure of the isolated dead motor domains from escherichia coli seca
  Author: s. nithianantham, s. namjoshi, b. h. shilton
  Keywords: translocation, crystal structure, dead motor domains, closed conformation, nucleotide-binding, atp- binding, membrane, transport protein
  
• 3c58.pdb. hydrolase/dna 31-jan-08 3c58 Zn
  Title: crystal structure of a complex between the wild-type lactococcus lactis fpg (mutm) and a n7-benzyl-fapy-dg containing dna
  Author: f. coste, b. castaing, t. carell
  Keywords: glycosylase, benzyl-fapy, dna repair, hydrolase/dna complex, dna damage, dna-binding, glycosidase, lyase, metal-binding, multifunctional enzyme, zinc, zinc- finger
  
• 3cji.pdb. virus 13-mar-08 3cji Ca
  Title: structure of seneca valley virus-001
  Author: s. venkataraman, v. s. reddy
  Keywords: rna-directed rna polymerase, thiol protease, transferase, virion, icosahedral virus, virus
  
• 3ckd.pdb. ligase 14-mar-08 3ckd Se
  Title: crystal structure of the c-terminal domain of the shigella type iii effector ipah
  Author: r. lam, a. u. singer, m. e. cuff, t. skarina, o. kagan, r. dileo, a. m. edwards, a. joachimiak, a. savchenko, midwest center for structural genomics (mcsg)
  Keywords: helical, type iii effector, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, plasmid
  
• 3cmq.pdb. ligase 24-mar-08 3cmq Mg
  Title: crystal structure of human mitochondrial phenylalanine trna synthetase
  Author: l. klipcan
  Keywords: rrm domain, trna, rna recogntion, aminoacyl-trna synthetase, atp-binding, ligase, mitochondrion, nucleotide-binding, protein biosynthesis, transit peptide
  
• 3cu4.pdb. electron transport 15-apr-08 3cu4 Fe
  Title: omcf, outer membrance cytochrome f from geobacter sulfurreducens
  Author: p. r. pokkuluri, m. schiffer
  Keywords: geobacter sulfurreducens, monoheme cytochrome, electron transport
  
• 3cvh.pdb. immune system 18-apr-08 3cvh
  Title: how tcr-like antibody recognizes mhc-bound peptide
  Author: t. mareeva, e. martinez-hackert, y. sykulev
  Keywords: tcr, glycoprotein, immune response, membrane, mhc i, transmembrane, acetylation, allergen, phosphoprotein, polymorphism, secreted, immunoglobulin domain, immune system
  
• 3cvi.pdb. immune system 18-apr-08 3cvi
  Title: how tcr-like antibody recognizes mhc-bound peptide
  Author: t. mareeva, e. martinez-hackert, y. sykulev
  Keywords: immune system
  
• 3cvr.pdb. ligase 19-apr-08 3cvr Se
  Title: crystal structure of the full length ipah3
  Author: y. zhu, f. shao
  Keywords: ligase
  
• 3d4j.pdb. lyase 14-may-08 3d4j
  Title: crystal structure of human mevalonate diphosphate decarboxylase
  Author: n. e. voynova, z. fu, k. battaile, t. j. herdendorf, j. -j. p. kim, h. m. miziorko
  Keywords: isopentenyl diphosphate, carboxylation, cholesterol biosynthesis, lipid synthesis, lyase, phosphoprotein, steroid biosynthesis, sterol biosynthesis
  
• 3d9y.pdb. protein binding 28-may-08 3d9y
  Title: crystal structure of profilin from schizosaccharomyces pombe
  Author: o. c. ezezika, b. j. nolen, t. d. pollard
  Keywords: pombe, yeast, , actin-binding, cytoplasm, cytoskeleton, protein binding
  
• 3dav.pdb. protein binding 30-may-08 3dav Na
  Title: crystal structure of profilin from schizosaccharomyces pombe
  Author: o. c. ezezika, b. j. nolen, t. d. pollard
  Keywords: yeast, pombe, protein-protein interaction, actin- binding, cytoplasm, cytoskeleton, protein binding
  
• 3dd2.pdb. hydrolase/rna 04-jun-08 3dd2 Mg F
  Title: crystal structure of an rna aptamer bound to human thrombin
  Author: s. b. long, b. a. sullenger
  Keywords: aptamer, rna, dna, heparin, exosite, hydrolase, protease, serine protease, hydrolase/rna complex
  
• 3dm6.pdb. hydrolase 30-jun-08 3dm6 F
  Title: beta-secretase 1 complexed with statine-based inhibitor
  Author: j. lindberg, n. borkakoti, s. nystrom
  Keywords: beta-secretase, statine, inhibitor, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, protease, transmembrane, zymogen
  
• 3dwn.pdb. lipid transport 22-jul-08 3dwn
  Title: crystal structure of the long-chain fatty acid transporter fadl mutant a77e/s100r
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein, lipid transport, membrane, outer membrane, phage recognition, transmembrane, transport
  
• 3dwo.pdb. membrane protein 22-jul-08 3dwo
  Title: crystal structure of a pseudomonas aeruginosa fadl homologue
  Author: e. m. hearn, d. r. patel, b. w. lepore, m. indic, b. van den berg
  Keywords: outer membrane protein
  
• 3e0j.pdb. transferase 31-jul-08 3e0j
  Title: x-ray structure of the complex of regulatory subunits of human dna polymerase delta
  Author: a. g. baranovskiy, n. d. babayeva, y. i. pavlov, d. g. vassylyev, t. h. tahirov
  Keywords: p66 subunit, p50 subunit, human, dna replication, dna-directed dna polymerase, nucleotidyltransferase, nucleus, polymorphism, transferase, phosphoprotein
  
• 3e19.pdb. transcription regulator, metal binding p02-aug-08 3e19
  Title: crystal structure of iron uptake regulatory protein (feoa) solved by sulfur sad in a monoclinic space group
  Author: r. c. hughes, y. li, b. -c. wang, z. -j. liu, j. d. ng
  Keywords: metal-binding, iron uptake, beta- barrel, transcription regulator, metal binding protein
  
• 3e8v.pdb. structural genomics, unknown function 20-aug-08 3e8v Ba
  Title: crystal structure of a possible transglutaminase-family protein proteolytic fragment from bacteroides fragilis
  Author: j. b. bonanno, m. rutter, k. t. bain, s. hu, r. romero, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
  
• 3e9c.pdb. hydrolase 21-aug-08 3e9c K
  Title: structure of a tryptic core fragment of tigar from danio rerio
  Author: h. li, g. jogl
  Keywords: hydrolase
  
• 3e9d.pdb. hydrolase 21-aug-08 3e9d K
  Title: structure of full-length tigar from danio rerio
  Author: h. li, g. jogl
  Keywords: hydrolase
  
• 3e9e.pdb. hydrolase 21-aug-08 3e9e
  Title: structure of full-length h11a mutant form of tigar from danio rerio
  Author: h. li, g. jogl
  Keywords: hydrolase
  
• 3ee1.pdb. hydrolase 03-sep-08 3ee1 Se
  Title: novel fold of vira, a type iii secretion system effector protein from shigella flexneri
  Author: j. s. davis
  Keywords: six-stranded beta barrel, hydrolase, plasmid, protease, secreted, thiol protease, virulence
  
• 3efc.pdb. membrane protein 08-sep-08 3efc
  Title: crystal structure of yaet periplasmic domain
  Author: p. z. gatzeva-topalova, t. a. walton, m. c. sousa
  Keywords: cell membrane, cell outer membrane, membrane, membrane protein
  
• 3ek4.pdb. fluorescent protein 18-sep-08 3ek4 Ca
  Title: calcium-saturated gcamp2 monomer
  Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
  Keywords: gcamp2, calcium, cpgfp, calmodulin, m13 peptide, chromophore, luminescence, photoprotein, acetylation, methylation, phosphoprotein, ubl conjugation, signaling protein, fluorescent protein
  
• 3ek7.pdb. fluorescent protein 18-sep-08 3ek7 Ca
  Title: calcium-saturated gcamp2 dimer
  Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
  Keywords: gcamp2, cpegfp, calcium, calmodulin, m13 peptide, acetylation, methylation, phosphoprotein, ubl conjugation, signaling protein, fluorescent protein
  
• 3ek8.pdb. fluorescent protein 19-sep-08 3ek8 Ca
  Title: calcium-saturated gcamp2 t116v/g87r mutant monomer
  Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
  Keywords: calcium, gcamp2, cpegfp, calmodulin, m13 peptide, signaling protein, fluorescent protein
  
• 3ekh.pdb. fluorescent protein 19-sep-08 3ekh Ca
  Title: calcium-saturated gcamp2 t116v/k378w mutant monomer
  Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
  Keywords: gcamp2, cpegfp, calcium, calmodulin, m13 peptide, signaling protein, fluorescent protein
  
• 3ekj.pdb. fluorescent protein 19-sep-08 3ekj
  Title: calcium-free gcamp2 (calcium binding deficient mutant)
  Author: j. akerboom, j. d. velez rivera, l. l. looger, e. r. schreiter
  Keywords: gcamp2, calcium, cpgfp, calmodulin, m13 peptide, apo gcamp2, calcium-free, signaling protein, fluorescent protein
  
• 3emn.pdb. membrane protein 24-sep-08 3emn
  Title: the crystal structure of mouse vdac1 at 2.3 a resolution
  Author: r. ujwal, d. cascio, j. -p. colletier, s. faham, j. zhang, l. toro, p. ping, j. abramson
  Keywords: eukaryotic membrane protein, beta barrel, channel, acetylation, alternative splicing, apoptosis, ion transport, mitochondrion, outer membrane, phosphoprotein, porin, transmembrane, transport
  
• 3ep2.pdb. ribosomal protein/rna 29-sep-08 3ep2 (cryo-electron microscopy)
  Title: model of phe-trna(phe) in the ribosomal pre-accommodated state revealed by cryo-em
  Author: j. frank, w. li, x. agirrezabala
  Keywords: protein biosynthesis, ribonucleoprotein, ribosomal protein, rna- binding, rrna-binding, trna-binding, ribosomal protein/rna complex
  
• 3epg.pdb. transferase/dna 29-sep-08 3epg Na
  Title: structure of human dna polymerase iota complexed with n2- ethylguanine
  Author: m. g. pence
  Keywords: nucleus, polymorphism, schiff base, transferase, transferase/dna complex
  
• 3epi.pdb. transferase/dna 29-sep-08 3epi Na
  Title: structure of human dna polymerase iota complexed with n2- ethylguanine and incoming ttp
  Author: m. g. pence
  Keywords: nucleus, polymorphism, schiff base, transferase, transferase/dna complex
  
• 3eq3.pdb. ribosomal protein/rna 30-sep-08 3eq3 (cryo-electron microscopy)
  Title: model of trna(trp)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-em
  Author: j. frank, w. li, x. agirrezabala
  Keywords: protein biosynthesis, ribonucleoprotein, ribosomal protein, rna- binding, rrna-binding, trna-binding, ribosomal protein/rna complex
  
• 3eq4.pdb. ribosomal protein/rna 30-sep-08 3eq4 (cryo-electron microscopy)
  Title: model of trna(leu)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-em
  Author: j. frank, w. li, x. agirrezabala
  Keywords: protein biosynthesis, ribonucleoprotein, ribosomal protein, rna- binding, rrna-binding, trna-binding, ribosomal protein/rna complex
  
• 3etf.pdb. oxidoreductase 07-oct-08 3etf Se
  Title: crystal structure of a putative succinate-semialdehyde dehydrogenase from salmonella typhimurium lt2
  Author: j. s. brunzelle, e. evdokimova, m kudritska, z wawrzak, w. f. anderson, a. savchenk, center for structural genomics of infectious diseases (csgid)
  Keywords: center for structural genomics of infectious diseases, oxidoreductase, csgid
  
• 3eul.pdb. transcription 10-oct-08 3eul Cl
  Title: structure of the signal receiver domain of the putative response regulator narl from mycobacterium tuberculosis
  Author: g. schneider, r schnell, d agren
  Keywords: dna-binding, transcription, transcription regulation
  
• 3exj.pdb. transcription/dna 16-oct-08 3exj Zn
  Title: crystal structure of a p53 core tetramer bound to dna
  Author: k. a. malecka
  Keywords: phosphoprotein, transcription, transcription regulation, ubl conjugation, zinc, transcription/dna complex
  
• 3exl.pdb. transcription/dna 16-oct-08 3exl Zn
  Title: crystal structure of a p53 core tetramer bound to dna
  Author: k. a. malecka
  Keywords: phosphoprotein, transcription, transcription regulation, ubl conjugation, zinc, transcription/dna complex
  
• 3ey9.pdb. oxidoreductase 20-oct-08 3ey9 Mg
  Title: structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from escherichia coli
  Author: p. neumann, a. weidner, a. pech, m. t. stubbs, k. tittmann
  Keywords: membrane-associated flavoprotein dehydrogenase, interactions with lipids, cell membrane, fad, flavoprotein, lipid-binding, magnesium, membrane, oxidoreductase, thiamine pyrophosphate
  
• 3eya.pdb. oxidoreductase 20-oct-08 3eya Mg
  Title: structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from escherichia coli
  Author: p. neumann, a. weidner, a. pech, m. t. stubbs, k. tittmann
  Keywords: membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane, fad, flavoprotein, lipid-binding, magnesium, membrane, oxidoreductase, thiamine pyrophosphate
  
• 3eyf.pdb. immune system 20-oct-08 3eyf
  Title: crystal structure of anti-human cytomegalovirus antibody 8f9 plus gb peptide
  Author: c. a. thomson, s. bryson, g. r. mclean, a. l. creagh, e. f. pai, j. w. schrader
  Keywords: antibody, immunoglobulin domain, cleavage on pair of basic residues, envelope protein, glycoprotein, host-virus interaction, membrane, transmembrane, virion, immune system
  
• 3eyo.pdb. immune system 21-oct-08 3eyo
  Title: crystal structure of anti-human cytomegalovirus antibody 8f9
  Author: c. a. thomson, s. bryson, g. r. mclean, a. l. creagh, e. f. pai, j. w. schrader
  Keywords: antibody, immunoglobulin domain, immune system
  
• 3eyq.pdb. immune system 21-oct-08 3eyq
  Title: crystal structure of mj5 fab, a germline antibody variant of anti-human cytomegalovirus antibody 8f9
  Author: c. a. thomson, s. bryson, g. r. mclean, a. l. creagh, e. f. pai, j. w. schrader
  Keywords: antibody, immunoglobulin domain, immune system
  
• 3f03.pdb. oxidoreductase 24-oct-08 3f03 Cl
  Title: crystal structure of pentaerythritol tetranitrate reductase complex with 1-nitrocyclohexene
  Author: a. r. roujeinikova, h. s. toogood, d. leys
  Keywords: bioreduction, biocatalysis, nitroalkenes, pentaerythritol tetranitrate reductase, stereo-control, oxidoreductase
  
• 3f49.pdb. hydrolase 31-oct-08 3f49 Na
  Title: anion-triggered engineered subtilisin subt_bacam
  Author: d. t. gallagher, p. n. bryan
  Keywords: anion sensor, calcium, hydrolase, metal-binding, protease, secreted, serine protease, sporulation, zymogen
  
• 3f5f.pdb. transport, transferase 03-nov-08 3f5f
  Title: crystal structure of heparan sulfate 2-o-sulfotransferase from gallus gallus as a maltose binding protein fusion.
  Author: h. n. bethea, d. xu, j. liu, l. c. pedersen
  Keywords: fusion, heparan sulfate biosynthesis, sulfotransferase, glycoprotein, golgi apparatus, membrane, signal-anchor, transferase, transmembrane, periplasm, sugar transport, transport
  
• 3f73.pdb. nucleic acid binding protein/dna/rna 07-nov-08 3f73 Mg
  Title: alignment of guide-target seed duplex within an argonaute silencing complex
  Author: y. wang, h. li, g. sheng, s. juranek, t. tuschl, d. patel
  Keywords: protein-dna-rna-complex, plasmid, nucleic acid binding protein/dna/rna complex
  
• 3f7c.pdb. structural genomics, unknown function 07-nov-08 3f7c Na Se
  Title: crystal structure of protein of unknown function (duf416) (yp_958225.1) from marinobacter aquaeolei vt8 at 2.00 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: protein of unknown function (duf416), structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3fat.pdb. membrane protein 18-nov-08 3fat
  Title: x-ray structure of iglur4 flip ligand-binding core (s1s2) in complex with (s)-ampa at 1.90a resolution
  Author: c. kasper, k. frydenvang, p. naur, m. gajhede, j. s. kastrup
  Keywords: iglur4, flip, ligand- binding core, agonist complex, x-ray, membrane protein
  
• 3fb3.pdb. transferase 18-nov-08 3fb3
  Title: crystal structure of trypanosoma brucei acetyltransferase, tb11.01.2886
  Author: a. k. wernimont, k. marino, a. z. zhang, d. ma, y. h. lin, f. mackenzie, i. kozieradzki, d. cossar, y. zhao, m. schapira, a. bochkarev, c. h. arrowsmith, c. bountra, j. weigelt, a. m. edwards, m. a. j ferguson, r. hui, w. qiu, structural genomics consortium (sgc)
  Keywords: malaria, structural genomics, structural genomics consortium, sgc, transferase
  
• 3fbi.pdb. transcription 19-nov-08 3fbi Se
  Title: structure of the mediator submodule med7n/31
  Author: t. koschubs, m. seizl, l. lariviere, f. kurth, s. baumli, d. e. martin, p. cramer
  Keywords: right-handed four-helix bundle, protein-protein complex, nucleus, transcription, transcription regulation, activator
  
• 3fbn.pdb. transcription 19-nov-08 3fbn
  Title: structure of the mediator submodule med7n/31
  Author: t. koschubs, m. seizl, l. lariviere, f. kurth, s. baumli, d. e. martin, p. cramer
  Keywords: right-handed four-helix bundle, protein-protein complex, nucleus, transcription, transcription regulation, activator
  
• 3fbv.pdb. transferase, hydrolase 19-nov-08 3fbv
  Title: crystal structure of the oligomer formed by the kinase- ribonuclease domain of ire1
  Author: a. v. korennykh, p. f. egea, a. a. korostelev, j. finer-moore, c. zhang, k. m. shokat, r. m. stroud, p. walter
  Keywords: multifunctional enzyme, nucleotide- binding, phosphoprotein, serine/threonine-protein kinase, transcription, transcription regulation, transferase, transmembrane, unfolded protein response
  
• 3fcg.pdb. membrane protein, protein transport 21-nov-08 3fcg Cl
  Title: crystal structure analysis of the middle domain of the caf1a usher
  Author: x. yu, g. r. visweswaran, z. duck, s. marupakula, s. macintyre, s. knight, a. v. zavialov
  Keywords: beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane, plasmid, transmembrane, transport, membrane protein, protein transport
  
• 3fdh.pdb. sugar binding protein 25-nov-08 3fdh Se
  Title: crystal structure of susd homolog (np_810946.1) from bacteriodes thetaiotaomicron vpi-5482 at 1.75 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: susd homolog, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function, sugar binding protein
  
• 3fdo.pdb. cell cycle 26-nov-08 3fdo Mg
  Title: structure of human mdmx in complex with high affinity peptide
  Author: a. l. czarna, g. m. popowicz, t. a. holak
  Keywords: mdm4, mdm-x, mdm-4, p53, mdm2, cell cycle
  
• 3fdx.pdb. structural genomics, unknown function 26-nov-08 3fdx Mg Se
  Title: putative filament protein / universal stress protein f from klebsiella pneumoniae.
  Author: j. osipiuk, l. volkart, j. bearden, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: apc60640.1, filament protein, universal stress protein f, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3fe1.pdb. chaperone 27-nov-08 3fe1 Cl Mg
  Title: crystal structure of the human heat shock 70kda protein 6 (hsp70b') atp-ase domain in complex with adp
  Author: m. wisniewska, l. lehtio, c. h. arrowsmith, h. berglund, c. bountra, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. karlberg, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, m. i. siponen, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, m. wikstrom, h. schueler, structural genomics consortium (sgc)
  Keywords: atp-binding, nucleotide-binding, polymorphism, stress response, chaperone, structural genomics, structural genomics consortium, sgc
  
• 3fe2.pdb. hydrolase 27-nov-08 3fe2 Cl
  Title: human dead-box rna helicase ddx5 (p68), conserved domain i in complex with adp
  Author: t. karlberg, m. i. siponen, c. h. arrowsmith, h. berglund, c. bountra, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, l. lehtio, m. moche, m. e. nilsson, p. nordlund, t. nyman, c. persson, j. sagemark, a. g. thorsell, l. tresaugues, s. van den berg, j. weigelt, m. welin, m. wikstrom, m. wisniewska, h. schuler, structural genomics consortium (sgc)
  Keywords: structural genomics consortium, sgc
  
• 3fe3.pdb. transferase 27-nov-08 3fe3
  Title: crystal structure of the kinase mark3/par-1: t211a-s215a double mutant
  Author: c. nugoor, a. marx, s. panneerselvam, e. -m. mandelkow, e. mandelkow
  Keywords: alternative splicing, atp-binding, kinase, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
  
• 3fe4.pdb. lyase 27-nov-08 3fe4 Mg
  Title: crystal structure of human carbonic anhydrase vi
  Author: e. s. pilka, g. kochan, e. krysztofinska, j. muniz, w. w. yue, a. k. roos, f. von delft, c. h. arrowsmith, j. weigelt, a. edwards, c. bountra, u. oppermann, structural genomics consortium (sgc)
  Keywords: secretion, metal binding, structural genomics, structural genomics consortium, sgc, glycoprotein, lyase, metal-binding, polymorphism, secreted, zinc
  
• 3feq.pdb. structural genomics, unknown function 30-nov-08 3feq Zn
  Title: crystal structure of uncharacterized protein eah89906
  Author: y. patskovsky, j. bonanno, r. romero, j. freeman, c. lau, d. smith, k. bain, s. r. wasserman, f. raushel, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics
  
• 3fes.pdb. atp binding protein 01-dec-08 3fes Mg Se
  Title: crystal structure of the atp-dependent clp protease clpc from clostridium difficile
  Author: y. kim, c. tesar, h. li, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, atp-binding, chaperone, nucleotide-binding, protease, atp binding protein
  
• 3fez.pdb. structural genomics, unknown function 01-dec-08 3fez Se
  Title: crystal structure of uncharacterized ferrodoxin fold protein related to antibiotic biosynthesis monooxygenases (yp_014836.1) from listeria monocytogenes 4b f2365 at 2.10 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: unknown function
  
• 3ff0.pdb. structural genomics, unknown function 01-dec-08 3ff0 Se
  Title: crystal structure of protein phzb2 with cystatin-like fold and unknown function in phenazine biosynthesis (np_250591.1) from pseudomonas aeruginosa at 1.90 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: antibiotic biosynthesis, virulence, biosynthetic protein, unknown function
  
• 3ff2.pdb. structural genomics, unknown function 01-dec-08 3ff2 Se
  Title: crystal structure of uncharacterized cystatin fold protein (yp_497570.1) from ntf2 superfamily (yp_497570.1) from novosphingobium aromaticivorans dsm 12444 at 1.90 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: uncharacterized cystatin fold protein (yp_497570.1) from ntf2 superfamily, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3ff4.pdb. structural genomics, unknown function 01-dec-08 3ff4 Se
  Title: crystal structure of uncharacterized protein chu_1412
  Author: c. chang, l. volkart, k. buck, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: cytophaga hutchinsonii atcc 33406, psi- 2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3ffl.pdb. cell cycle 03-dec-08 3ffl
  Title: crystal structure of the n-terminal domain of anaphase- promoting complex subunit 7
  Author: d. han, k. kim, y. kim, y. kim
  Keywords: helis-turn-helix, cell cycle, cell division, mitosis, tpr repeat, ubl conjugation pathway
  
• 3ffy.pdb. structural genomics, unknown function 04-dec-08 3ffy Se
  Title: putative tetrapyrrole (corrin/porphyrin) methyltransferase from bacteroides fragilis.
  Author: j. osipiuk, l. volkart, g. cobb, y. kim, a. joachimiak, midwest center for structural genomics (mcsg)
  Keywords: apc62130.1, methyltransferase, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
  
• 3ffz.pdb. hydrolase 04-dec-08 3ffz Zn Na
  Title: domain organization in clostridium butulinum neurotoxin type e is unique: its implication in faster translocation
  Author: d. kumaran, s. eswaramoorthy, s. swaminathan
  Keywords: botulism, domain organization, endopeptidase, translocation, hydrolase, membrane, metal-binding, metalloprotease, neurotoxin, protease, secreted, toxin, transmembrane, zinc