Recent PDB releases or updates: week of 31 October 2008

1bxx.pdb. endocytosis/exocytosis 08-oct-98 1bxx
Title: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain), complexed with tgn38 internalization peptide dyqrln
Author: d. j. owen, p. r. evans
Keywords: adaptor, peptide complex
2i7o.pdb. electron transport 31-aug-06 2i7o Re Cu
Title: structure of re(4,7-dimethyl-phen)(thr124his)(lys122trp) (his83gln)azcu(ii), a rhenium modified azurin mutant
Author: j. sudhamsu, b. r. crane
Keywords: rhenium, elecron transfer, tryptophan, electron transport
2iv1.pdb. lyase 08-jun-06 2iv1 Cl
Title: site directed mutagenesis of key residues involved in the catalytic mechanism of cyanase
Author: m. guilloton, m. a. walsh, a. joachimiak, p. m. anderson
Keywords: protein structure initiative, psi, mcsg, lyase, cyanate degradation
2ivb.pdb. lyase 09-jun-06 2ivb Cl
Title: site directed mutagenesis of key residues involved in the catalytic mechanism of cyanase
Author: m. guilloton, m. a. walsh, a. joachimiak, p. m. anderson
Keywords: protein structure initiative, psi, mcsg, lyase, cyanate degradation
2ivg.pdb. lyase 13-jun-06 2ivg Cl
Title: site directed mutagenesis of key residues involved in the catalytic mechanism of cyanase
Author: m. guilloton, m. a. walsh, a. joachimiak, p. m. anderson
Keywords: protein structure initiative, psi, mcsg, lyase, cyanate degradation
2ivq.pdb. lyase 14-jun-06 2ivq Cl
Title: site directed mutagenesis of key residues involved in the catalytic mechanism of cyanase
Author: m. guilloton, m. a. walsh, a. joachimiak, p. m. anderson
Keywords: lyase, mcsg, midwest center for structural genomics, protein structure initiative, psi
2j76.pdb. translation 06-oct-06 2j76 He Hg (NMR, 1 structure)
Title: solution structure and rna interactions of the rna recognition motif from eukaryotic translation initiation factor 4b
Author: k. fleming, j. ghuman, x. m. yuan, p. simpson, a. szendroi, s. matthews, s. curry
Keywords: rna recognition motif, initiation factor, rna binding domain, translation, rrm, rbd, rnp, rna-binding, phosphorylation
2j8o.pdb. structural protein 26-oct-06 2j8o
Title: structure of the immunoglobulin tandem repeat of titin a168- a169
Author: s. mueller, s. lange, i. kursula, m. gautel, m. wilmanns
Keywords: immunoglobulin domain, immunoglobulin like domain, nucleotide-binding, alternative splicing, atp-binding, transferase, coiled coil, kelch repeat
2ja2.pdb. ligase 20-nov-06 2ja2 Cl
Title: mycobacterium tuberculosis glutamyl-trna synthetase
Author: g. p. bourenkov, n. strizhov, l. a. shkolnaya, m. bruning, h. d. bartunik
Keywords: protein biosynthesis, aminoacyl-trna synthetase, ligase, atp-binding, nucleotide-binding
2jkr.pdb. endocytosis 29-aug-08 2jkr
Title: ap2 clathrin adaptor core with dileucine peptide rm( phosphos)qikrllse
Author: d. j. owen, a. j. mccoy, b. t. kelly, p. r. evans
Keywords: phosphoprotein, phosphorylation, protein transport, adaptor, membrane, transport, coated pit, endocytosis, cell membrane, lipid-binding
2jkt.pdb. endocytosis 29-aug-08 2jkt
Title: ap2 clathrin adaptor core with cd4 dileucine peptide rm( phosphos)eikrllse q to e mutant
Author: d. j. owen, a. j. mccoy, b. t. kelly, p. r. evans
Keywords: phosphoprotein, phosphorylation, protein transport, adaptor, membrane, transport, coated pit, endocytosis, cell membrane, lipid-binding
2jln.pdb. membrane protein 11-sep-08 2jln Hg Na
Title: structure of mhp1, a nucleobase-cation-symport-1 family transporter
Author: s. weyand, t. shimamura, s. yajima, s. suzuki, o. mirza, k. krusong, e. p. carpenter, n. g. rutherford, j. m. hadden, j. o'reilly, p. ma, m. saidijam, s. g. patching, r. j. hope, h. t. norbertczak, p. c. j. roach, s. iwata, p. j. f. henderson, a. d. cameron
Keywords: transporter, membrane protein, nucleobase-cation-symport-1 family
2jlo.pdb. membrane protein 12-sep-08 2jlo Na
Title: structure of mhp1, a nucleobase-cation-symport-1 family transporter, in a closed conformation with benzylhydantoin
Author: s. weyand, t. shimamura, s. yajima, s. suzuki, o. mirza, k. krusong, e. p. carpenter, n. g. rutherford, j. m. hadden, j. o'reilly, p. ma, m. saidijam, s. g. patching, r. j. hope, h. t. norbertczak, p. c. j. roach, s. iwata, p. j. f. henderson, a. d. cameron
Keywords: transporter, membrane protein, nucleobase-cation-symport-1 family
2k01.pdb. cytokine 23-jan-08 2k01 He Hg (NMR, 20 structures)
Title: structure of a locked sdf1 dimer
Author: b. f. volkman, c. t. veldkamp, f. c. peterson
Keywords: sdf1-alpha, cxcl12, chemokine, sulfotyrosine, locked dimer, alternative splicing, chemotaxis, cytokine, growth factor, secreted
2k03.pdb. cytokine 24-jan-08 2k03 He Hg (NMR, 20 structures)
Title: structure of sdf1 in complex with the cxcr4 n-terminus containing a sulfotyrosine at postition 21
Author: b. f. volkman, c. t. veldkamp, f. c. peterson
Keywords: host-virus interaction, membrane, receptor, sulfation, transducer, transmembrane
2k04.pdb. cytokine 24-jan-08 2k04 He Hg (NMR, 20 structures)
Title: structure of sdf1 in complex with the cxcr4 n-terminus containing no sulfotyrosines
Author: b. f. volkman, c. t. veldkamp, f. c. peterson
Keywords: receptor, sulfation, transducer, transmembrane
2k05.pdb. cytokine 24-jan-08 2k05 He Hg (NMR, 20 structures)
Title: structure of sdf1 in complex with the cxcr4 n-terminus containing sulfotyrosines at postitions 7, 12 and 21
Author: b. f. volkman, c. t. veldkamp, f. c. peterson
Keywords: host-virus interaction, membrane, receptor, sulfation, transducer, transmembrane
2k1i.pdb. antimicrobial protein 05-mar-08 2k1i Hg (NMR, 10 structures)
Title: synthesis, structure and activities of an oral mucosal alpha-defensin from rhesus macaque
Author: s. v. vasudevan, j. yuan, g. osapay, p tran, k. tai, m. selsted, m. j. cocco
Keywords: rhesus macaque, defensin, anti parallel beta sheet, antimicrobial protein
2k1k.pdb. signaling protein 06-mar-08 2k1k Hg (NMR, 12 structures)
Title: nmr structures of dimeric transmembrane domain of the receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
Author: m. l. mayzel, e. v. bocharov, a. s. arseniev, m. v. goncharuk
Keywords: receptor tyrosine kinase, dimeric transmembrane domain, atp-binding, glycoprotein, nucleotide-binding, phosphoprotein, polymorphism, transferase, tyrosine-protein kinase, signaling protein
2k36.pdb. viral protein 22-apr-08 2k36 He Hg (NMR, 15 structures)
Title: structure ensemble backbone and side-chain 1h, 13c, and 15n chemical shift assignments, 1h-15n rdcs and 1h-1h noe restraints for protein k7 from the vaccinia virus
Author: a. p. kalverda, g. s. thompson, a. vogel, m. schr der, a. g. bowie, a. r. khan, s. w. homans
Keywords: viral protein
2k3w.pdb. protein transport 19-may-08 2k3w He Hg (NMR, 20 structures)
Title: nmr structure of vps4a-mit-chmp6
Author: c. kieffer, j. j. skalicky, e. morita, i. de domini, d. m. ward, j. kaplan, w. i. sundquist
Keywords: nmr, chmp6, mit, atp-binding, membrane, nucleotide-binding, protein transport, transport, coiled coil, endosome, lipoprotein, myristate
2k48.pdb. viral protein 30-may-08 2k48 He Hg (NMR, 20 structures)
Title: nmr structure of the andes virus nucleocapsid protein n- terminal domain
Author: y. wang, d. m. boudreaux, d. f. estrada, c. w. egan, s. c. st jeor, r. n. de guzman
Keywords: viral protein
2k4l.pdb. deoxyribonucleic acid 13-jun-08 2k4l Ho (NMR, 10 structures)
Title: solution structure of a 2:1c2-(2-naphthyl)pyrrolo[2,1-c][1, 4]benzodiazepine (pbd) dna adduct: molecular basis for unexpectedly high dna helix stabilization.
Author: d. antonow, t. barata, t. c. jenkins, g. n. parkinson, p. w. howard, d. e. thurston, m. zloh
Keywords: 1-c][1, 4]benzodiazepine, pbd, dna adduct
2k6x.pdb. transcription 28-jul-08 2k6x He Hg (NMR, 20 structures)
Title: autoregulation of a group 1 bacterial sigma factor involves the formation of a region 1.1- induced compacted structure
Author: e. c. schwartz, a. shekhtman, k. dutta, m. r. pratt, d. cowburn, s. darst, t. w. muir
Keywords: dna-binding, sigma factor, transcription, transcription regulation
2k7w.pdb. apoptosis 27-aug-08 2k7w He (NMR, 20 structures)
Title: bax activation is initiated at a novel interaction site
Author: e. gavathiotis, m. suzuki, m. l. davis, k. pitter, g. h. bird, s. g. katz, h. tu, h. kim, e. h. y. cheng, n. tjandra, l. d. walensky
Keywords: bim, bh3, bcl-2, apoptosis
2pkl.pdb. hormone receptor 17-apr-07 2pkl I
Title: androgen receptor lbd with small molecule
Author: e. estebanez-perpina, a. a. arnold, j. d. baxter, k. r. guy, p. webb, r. j. fletterick
Keywords: hormone receptor
2pqq.pdb. transcription 02-may-07 2pqq Se
Title: structural genomics, the crystal structure of the n- terminal domain of a transcriptional regulator from streptomyces coelicolor a3(2)
Author: k. tan, x. xu, h. zheng, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: transcriptional regulator, streptomyces coelicolor a3(2), structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg
2qfv.pdb. oxidoreductase 28-jun-07 2qfv
Title: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-dependent isocitrate dehydrogenase in complex with nadp(+)
Author: y. j. peng, j. p. ding
Keywords: oxidoreductase
2qfw.pdb. oxidoreductase 28-jun-07 2qfw
Title: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-dependent isocitrate dehydrogenase in complex with isocitrate
Author: y. j. peng, j. p. ding
Keywords: oxidoreductase
2qfx.pdb. oxidoreductase 28-jun-07 2qfx Ca
Title: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-dependent isocitrate dehydrogenase in complex with nadph, a-ketoglutarate and ca(2+)
Author: y. j. peng, j. p. ding
Keywords: oxidoreductase
2qfy.pdb. oxidoreductase 28-jun-07 2qfy
Title: crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-dependent isocitrate dehydrogenase in complex with a-ketoglutarate
Author: y. j. peng, j. p. ding
Keywords: oxidoreductase
2qz2.pdb. hydrolase 16-aug-07 2qz2 Na
Title: crystal structure of a glycoside hydrolase family 11 xylanase from aspergillus niger in complex with xylopentaose
Author: e. vandermarliere, s. rombouts, s. v. strelkov, j. a. delcour, c. m. courtin, a. rabijns
Keywords: xylanase, glycosidase, xylan degradation
2qz3.pdb. hydrolase 16-aug-07 2qz3
Title: crystal structure of a glycoside hydrolase family 11 xylanase from bacillus subtilis in complex with xylotetraose
Author: e. vandermarliere, t. m. bourgois, s. v. strelkov, j. a. delcour, c. m. courtin, a. rabijns
Keywords: xylanase, glycosidase, xylan degradation
2rl3.pdb. hydrolase 18-oct-07 2rl3
Title: crystal structure of the oxa-10 w154h mutant at ph 7
Author: l. vercheval, f. kerff, r. herman, e. sauvage, r. guiet, p. charlier, j. -m. frere, m. galleni
Keywords: carboxylated lysine, class d beta-lactamase, antibiotic resistance, hydrolase, plasmid, transposable element
2rn5.pdb. hormone 06-dec-07 2rn5 He Hg (NMR, 50 structures)
Title: humal insulin mutant b31lys-b32arg
Author: w. bocian, l. kozerski
Keywords: human insulin mutant, 35% cd3cn, monomer, carbohydrate metabolism, cleavage on pair of basic residues, diabetes mellitus, disease mutation, glucose metabolism, hormone, pharmaceutical, secreted
2va0.pdb. transferase 28-aug-07 2va0 Cl
Title: differential regulation of the xylan degrading apparatus of cellvibrio japonicus by a novel two component system
Author: j. w. murray, k. emami, e. topakas, t. nagy, j. henshaw, k. a. jackson, k. e. nelson, e. f. mongodin, r. j. lewis, h. j. gilbert
Keywords: kinase, pas domain, carbohydrate, transferase
2vb0.pdb. hydrolase 05-sep-07 2vb0 Cl
Title: crystal structure of coxsackievirus b3 proteinase 3c
Author: k. anand, j. r. mesters, r. goerlach, r. zell, r. hilgenfeld
Keywords: ag7088, rna-binding protein, picornaviridae, cysteine protease, human enterovirus b, hydrolase
2vbj.pdb. hydrolase 14-sep-07 2vbj Ca
Title: molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Author: p. redondo, j. prieto, i. g. munoz, a. alibes, f. stricher, l. serrano, s. arnould, c. perez, j. p. cabaniols, p. duchateau, f. paques, f. j. blanco, g. montoya
Keywords: cutting dna endonucleases, amel3-4-calcium, uv-induced dna damage, homing endonucleases (hes), hydrolase
2vbl.pdb. hydrolase 14-sep-07 2vbl Mg
Title: molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Author: p. redondo, j. prieto, i. g. munoz, a. alibes, f. stricher, l. serrano, s. arnould, c. perez, j. p. cabaniols, p. duchateau, f. paques, f. j. blanco, g. montoya
Keywords: cutting dna endonucleases, plastid, nuclease, hydrolase, chloroplast, endonuclease, intron homing, amel3- 4_magnesium, double strand break (dsb), homing endonucleases (hes)
2vbn.pdb. hydrolase 14-sep-07 2vbn Mg Ca
Title: molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Author: p. redondo, j. prieto, i. g. munoz, a. alibes, f. stricher, l. serrano, s. arnould, c. perez, j. p. cabaniols, p. duchateau, f. paques, f. j. blanco, g. montoya
Keywords: cutting dna endonucleases, endonuclease, intron homing, ini3- 4_magnesium, plastid, nuclease, hydrolase, chloroplast, double strand break (dsb), homing endonucleases (hes)
2vbo.pdb. hydrolase 14-sep-07 2vbo Ca
Title: molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Author: p. redondo, j. prieto, i. g. munoz, a. alibes, f. stricher, l. serrano, s. arnould, c. perez, j. p. cabaniols, p. duchateau, f. paques, f. j. blanco, g. montoya
Keywords: cutting dna endonucleases, plastid, nuclease, hydrolase, chloroplast, endonuclease, intron homing, ini3-4-calcium, double strand break (dsb), homing endonucleases (hes)
2vcr.pdb. transferase 26-sep-07 2vcr
Title: glutathione transferase a2-2 in complex with glutathione
Author: k. tars, b. olin, b. mannervik
Keywords: glutathione, polymorphism cytoplasm, transferase
2vct.pdb. transferase 27-sep-07 2vct
Title: glutathione transferase a2-2 in complex with delta-4- andostrene-3-17-dione
Author: k. tars, b. olin, b. mannervik
Keywords: andostrene dione, steroid metabolism, cytoplasm, transferase, glutathione, polymorphism
2vcv.pdb. transferase 27-sep-07 2vcv
Title: glutathione transferase a3-3 in complex with glutathione and delta-4-androstene-3-17-dione
Author: k. tars, b. olin, b. mannervik
Keywords: andostrene dione, steroid metabolism, cytoplasm, transferase, glutathione, polymorphism
2vds.pdb. oxidoreductase 10-oct-07 2vds Cu
Title: crystal structure of laccase from coriolopsis gallica
Author: e. de la mora, b. valderrama, e. horjales, e. rudino-pinera
Keywords: blue multicopper oxidase, blue copper protein, beta sandwich, immunoglobulin-like.
2vf9.pdb. virus 01-nov-07 2vf9 Ca
Title: crystal structure of bacteriophage prr1
Author: m. persson, k. tars, l. liljas
Keywords: rna-binding, capsid protein, structural protein, virus
2vgo.pdb. transferase 15-nov-07 2vgo
Title: crystal structure of aurora b kinase in complex with reversine inhibitor
Author: a. m. d'alise, g. amabile, m. iovino, f. p. di giorgio, m. bartiromo, f. sessa, f. villa, a. musacchio, r. cortese
Keywords: cell cycle, centromere, microtubule
2vlf.pdb. lyase 14-jan-08 2vlf K
Title: quinonoid intermediate of citrobacter freundii tyrosine phenol-lyase formed with alanine
Author: d. milic, t. v. demidkina, d. matkovic-calogovic, a. a. antson
Keywords: quinonoid intermediate, lyase, pyridoxal phosphate, tyrosine degradation
2vlh.pdb. lyase 14-jan-08 2vlh K
Title: quinonoid intermediate of citrobacter freundii tyrosine phenol-lyase formed with methionine
Author: d. milic, t. v. demidkina, d. matkovic-calogovic, a. a. antson
Keywords: quinonoid intermediate, lyase, pyridoxal phosphate, tyrosine degradation
2vqa.pdb. metal-binding protein 12-mar-08 2vqa Mn
Title: protein-folding location can regulate mn versus cu- or zn- binding. crystal structure of mnca.
Author: s. tottey, k. j. waldron, s. j. firbank, b. reale, c. bessant, k. sato, j. gray, m. j. banfield, c. dennison, n. j. robinson
Keywords: metal-binding protein, mn2+, cupin, bi-cupin, oxalate decarboxylase
2vrn.pdb. hydrolase 09-apr-08 2vrn Mg
Title: the structure of the stress response protein dr1199 from deinococcus radiodurans: a member of the dj-1 superfamily
Author: e. fioravanti, m. a. dura, d. lascoux, e. micossi, s. mcsweeney
Keywords: dj-1/thij/pfpi superfamily, protease, hydrolase, stress response
2vrz.pdb. viral protein 17-apr-08 2vrz Zn Se
Title: structural analysis of homodimeric staphylococcal aureus esxa
Author: r. sundaramoorthy, w. n. hunter
Keywords: virulence, virulence factor, four helical bundle, viral protein
2vs0.pdb. viral protein 17-apr-08 2vs0 Zn Se As
Title: structural analysis of homodimeric staphylococcal aureus virulence factor esxa
Author: r. sundaramoorthy, p. k. fyfe, w. n. hunter
Keywords: virulence, four helical bundle, viral protein
2vsr.pdb. receptor 29-apr-08 2vsr
Title: hppargamma ligand binding domain in complex with 9-(s)-hode
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
2vst.pdb. receptor 29-apr-08 2vst
Title: hppargamma ligand binding domain in complex with 13-(s)- hode
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
2vtz.pdb. transferase 19-may-08 2vtz
Title: biosynthetic thiolase from z. ramigera. complex of the c89a mutant with coenzyme a.
Author: p. kursula, g. merilainen, r. k. wierenga
Keywords: cytoplasm, phb biosynthesis, thiolase fold, transferase
2vu0.pdb. transferase 19-may-08 2vu0
Title: biosynthetic thiolase from z. ramigera. complex of the oxidised enzyme with coenzyme a.
Author: p. kursula, r. k. wierenga
Keywords: phb biosynthesis, cytoplasm, transferase, thiolase fold
2vu1.pdb. transferase 19-may-08 2vu1 Na
Title: biosynthetic thiolase from z. ramigera. complex of with o- pantheteine-11-pivalate.
Author: p. kursula, w. schmitz, r. k. wierenga
Keywords: phb biosynthesis, cytoplasm, transferase, thiolase fold
2vu2.pdb. transferase 19-may-08 2vu2
Title: biosynthetic thiolase from z. ramigera. complex with s- pantetheine-11-pivalate.
Author: p. kursula, g. merilainen, w. schmitz, r. k. wierenga
Keywords: phb biosynthesis, cytoplasm, transferase, thiolase fold
2vv0.pdb. receptor 02-jun-08 2vv0
Title: hppargamma ligand binding domain in complex with dha
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
2vv1.pdb. receptor 02-jun-08 2vv1
Title: hppargamma ligand binding domain in complex with 4-hdha
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
2vv2.pdb. receptor 02-jun-08 2vv2
Title: hppargamma ligand binding domain in complex with 5-hepa
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
2vv3.pdb. receptor 02-jun-08 2vv3
Title: hppargamma ligand binding domain in complex with 4-oxodha
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: oxidised fatty acid, transcription factor, metal-binding, phosphoprotein, disease mutation
2vv4.pdb. receptor 02-jun-08 2vv4
Title: hppargamma ligand binding domain in complex with 6-oxoote
Author: t. itoh, l. fairall, j. w. r. schwabe
Keywords: nuclear receptor, ligand binding domain, oxidised fatty acid, transcription factor
2vwx.pdb. transferase 27-jun-08 2vwx Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
2vwy.pdb. transferase 30-jun-08 2vwy Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
2vwz.pdb. transferase 30-jun-08 2vwz Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
2vx0.pdb. transferase 30-jun-08 2vx0 Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
2vx1.pdb. transferase 30-jun-08 2vx1 Cl Mg
Title: ephb4 kinase domain inhibitor complex
Author: j. read, c. a. brassington, i. green, e. j. mccall, a. l. valentine, d. barratt, a. g. leach, j. g. kettle
Keywords: receptor tyrosine kinase, kinase, mutant, membrane, receptor, transferase, atp-binding, polymorphism, glycoprotein, transmembrane, phosphoprotein, unphosphorylated, nucleotide-binding
2vxe.pdb. transcription 03-jul-08 2vxe He Hg (NMR, 24 structures)
Title: solution structure of the lsm domain of drosophila melanogaster tral (trailer hitch)
Author: f. tritschler, m. coles, v. truffault
Keywords: car-1, p-bodies, decapping, mrna decay, lsm proteins, translational repression, transcription
2vxf.pdb. transcription 03-jul-08 2vxf Hg (NMR, 20 structures)
Title: solution structure of the lsm-domain of zebrafish rap55
Author: f. tritschler, m. coles, v. truffault
Keywords: translational repression, transcription, edc3, rap55, car-1, p-bodies, decapping, mrna decay
2vxj.pdb. sugar binding protein 04-jul-08 2vxj Ca
Title: crystal structure of pa-il lectin complexed with agal13bgal14glc at 1.9 a resolution
Author: b. blanchard, a. nurisso, e. hollville, c. tetaud, j. wiels, m. pokorna, m. wimmerova, a. varrot, a. imberty
Keywords: pseudomonas aeruginosa, globoside, cytoplasm, periplasm, sugar binding protein
2vzc.pdb. cell adhesion 31-jul-08 2vzc
Title: crystal structure of the c-terminal calponin homology domain of alpha parvin
Author: s. lorenz, i. vakonakis, e. d. lowe, i. d. campbell, m. e. m. noble, m. k. hoellerer
Keywords: cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane, cell adhesion
2vzd.pdb. cell adhesion 31-jul-08 2vzd
Title: crystal structure of the c-terminal calponin homology domain of alpha parvin in complex with paxillin ld1 motif
Author: s. lorenz, i. vakonakis, e. d. lowe, i. d. campbell, m. e. m. noble, m. k. hoellerer
Keywords: cell membrane, cell adhesion, metal-binding, cytoskeleton, cell junction, actin-binding, phosphoprotein, alternative splicing, zinc, membrane, ld1 motif, cytoplasm, lim domain
2vzg.pdb. cell adhesion 01-aug-08 2vzg
Title: crystal structure of the c-terminal calponin homology domain of alpha-parvin in complex with paxillin ld2 motif
Author: s. lorenz, i. vakonakis, e. d. lowe, i. d. campbell, m. e. m. noble, m. k. hoellerer
Keywords: cell membrane, cell adhesion, metal-binding, cytoskeleton, cell junction, actin-binding, zinc, membrane, ld2 motif, cytoplasm, lim domain, phosphoprotein, alternative splicing
2vzi.pdb. cell adhesion 01-aug-08 2vzi
Title: crystal structure of the c-terminal calponin homology domain of alpha-parvin in complex with paxillin ld4 motif
Author: s. lorenz, i. vakonakis, e. d. lowe, i. d. campbell, m. e. m. noble, m. k. hoellerer
Keywords: cell membrane, metal-binding, calponin homology domain, cytoskeleton, cell junction, actin-binding, zinc, membrane, ld2 motif, cytoplasm, lim domain, phosphoprotein, alternative splicing
2w01.pdb. lyase 08-aug-08 2w01
Title: crystal structure of the guanylyl cyclase cya2
Author: a. rauch, m. leipelt, m. russwurm, c. steegborn
Keywords: class iii nucleotidyl cyclase, lyase
2w05.pdb. transferase 08-aug-08 2w05
Title: structure of cdk2 in complex with an imidazolyl pyrimidine, compound 5b
Author: m. anderson, d. m. andrews, a. j. barker, c. a. brassington, j. breed, k. f. byth, j. d. culshaw, m. r. finlay, e. fisher, c. p. green, d. w. heaton, i. a. nash, n. j. newcombe, s. e. oakes, r. a. pauptit, a. roberts, j. j. stanway, a. p. thomas, j. a. tucker, h. m. weir
Keywords: mitosis, cell cycle, transferase, serine/threonine-protein kinase, atp-binding, polymorphism, cell division, phosphoprotein, phosphorylation, nucleotide-binding
2w06.pdb. transferase 08-aug-08 2w06
Title: structure of cdk2 in complex with an imidazolyl pyrimidine, compound 5c
Author: m. anderson, d. m. andrews, a. j. barker, c. a. brassington, k. f. byth, j. d. culshaw, m. r. v. finlay, e. fisher, h. h. j. mcmiken, c. p. green, d. w. heaton, i. a. nash, n. j. newcombe, s. e. oakes, a. roberts, j. j. stanway, a. p. thomas, j. a. tucker, h. m. weir
Keywords: mitosis, cell cycle, transferase, serine/threonine-protein kinase, atp-binding, polymorphism, cell division, phosphoprotein, phosphorylation, nucleotide-binding
2w1l.pdb. hydrolase 17-oct-08 2w1l Cl Na
Title: the interdependence of wavelength, redundancy and dose in sulfur sad experiments: 0.979 a wavelength 991 images data
Author: m. cianci, j. r. helliwell, a. suzuki
Keywords: redundancy, sad, dose, hydrolase, wavelength, detector- tilt geometry
2z79.pdb. hydrolase 16-aug-07 2z79
Title: high resolution crystal structure of a glycoside hydrolase family 11 xylanase of bacillus subtilis
Author: e. vandermarliere, t. m. bourgois, s. v. strelkov, j. a. delcour, c. m. courtin, a. rabijns
Keywords: xylanase, glycosidase, xylan degradation
2z9i.pdb. hydrolase 20-sep-07 2z9i Se
Title: crystal structure of rv0983 from mycobacterium tuberculosis- proteolytically active form
Author: s. k. palaninathan, n. n. mohamedmohaideen, j. c. sacchettini
Keywords: htra, hydrolase
2zbj.pdb. sugar binding protein 22-oct-07 2zbj Mn Ca
Title: crystal structure of dioclea rostrata lectin
Author: t. m. de oliveira, p. delatorre, b. a. m. da rocha, e. p. de sousa, k. s. nascimento, g. a. bezerra, t. r. moura, r. g. benevides, e. h. s. bezerra, f. b. m. b. moreno, v. n. freire, w. f. de azevedo jr. , b. s. cavada
Keywords: lectin, diocleinae, dioclea rostrata, calcium, manganese, metal-binding, vacuole, sugar binding protein
2zc9.pdb. blood clotting/hydrolase inhibitor 06-nov-07 2zc9 Cl Na
Title: thrombin in complex with inhibitor
Author: b. baum, a. heine, g. klebe
Keywords: polymorphism, zymogen, blood clotting/hydrolase inhibitor complex
2zda.pdb. blood clotting/hydrolase inhibitor 21-nov-07 2zda Na
Title: exploring thrombin s1 pocket
Author: b. baum, a. heine, g. klebe
Keywords: zymogen
2zdv.pdb. blood clotting/hydrolase inhibitor 29-nov-07 2zdv F Na
Title: exploring thrombin s1 pocket
Author: b. baum, a. heine, g. klebe
Keywords: zymogen
2zmm.pdb. hydrolase 19-apr-08 2zmm Cl Mg Br
Title: crystal structure of ptp1b-inhibitor complex
Author: w. xu, j. wu
Keywords: protein-inhibitor complex, acetylation, endoplasmic reticulum, hydrolase, membrane, oxidation, phosphoprotein, polymorphism, protein phosphatase
2zn7.pdb. hydrolase 22-apr-08 2zn7 Br
Title: crystal structures of ptp1b-inhibitor complexes
Author: w. xu, j. wu
Keywords: protein-inhibitor complex, acetylation, endoplasmic reticulum, hydrolase, membrane, oxidation, phosphoprotein, polymorphism, protein phosphatase
2zpp.pdb. hormone 26-jul-08 2zpp Hg D (neutron diffraction)
Title: neutron crystal structure of cubic insulin at pd9
Author: t. ishikawa, i. tanaka, n. niimura
Keywords: cubic, porcine insulin, neutron diffraction, carbohydrate metabolism, cleavage on pair of basic residues, glucose metabolism, secreted
2zq0.pdb. hydrolase 31-jul-08 2zq0 Ca
Title: crystal structure of susb complexed with acarbose
Author: m. yao, i. tanaka, m. kitamura
Keywords: tim barrel
2zqm.pdb. chaperone 13-aug-08 2zqm
Title: crystal structure of the prefoldin beta subunit from thermococcus strain ks-1
Author: h. kida, k. miki
Keywords: prefoldin
2zs0.pdb. oxygen storage, oxygen transport 02-sep-08 2zs0 Cl Fe Ca
Title: structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin
Author: n. numoto, t. nakagawa, a. kita, y. sasayama, y. fukumori, k. miki
Keywords: annelida, calcium, magnesium, cooperativity, heme, iron, metal-binding, oxygen transport, secreted, transport, oxygen storage
2zs1.pdb. oxygen storage, oxygen transport 02-sep-08 2zs1 Cl Mg Fe
Title: structural basis for the heterotropic and homotropic interactions of invertebrate giant hemoglobin
Author: n. numoto, t. nakagawa, a. kita, y. sasayama, y. fukumori, k. miki
Keywords: annelida, calcium, magnesium, cooperativity, heme, iron, metal-binding, oxygen transport, secreted, transport, oxygen storage
3b3k.pdb. transcription 22-oct-07 3b3k
Title: crystal structure of the complex between ppargamma and the full agonist lt175
Author: g. pochetti, r. montanari, f. mazza, f. loiodice, g. fracchiolla, m. crestani, c. godio
Keywords: transcription, transcription regulation, zinc, zinc-finger
3b3l.pdb. transferase 22-oct-07 3b3l
Title: crystal structures of alternatively-spliced isoforms of human ketohexokinase
Author: c. h. trinh, a. asipu, d. t. bonthron, s. e. v. phillips
Keywords: alternative splicing, carbohydrate metabolism, disease mutation, phosphorylation, polymorphism, transferase
3bdx.pdb. immune system 15-nov-07 3bdx
Title: crystal structure of the unstable and highly fibrillogenic pro7ser mutant of the recombinant variable domain 6ajl2
Author: a. hernandez-santoyo, d. fuentes-silva, l. del pozo yauner, b. becerril, a. rodriguez-romero
Keywords: light chain variable domain, beta- sandwich, immunoglobulin, al amyloidosis, immune system
3be5.pdb. metal transport 16-nov-07 3be5 Cl Se
Title: crystal structure of fite (crystal form 1), a group iii periplasmic siderophore binding protein
Author: r. shi, a. matte, m. cygler, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: closed form, group iii periplasmic binding protein, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi, metal transport
3be6.pdb. metal transport 16-nov-07 3be6 Cl Mg Se
Title: crystal structure of fite (crystal form 2), a group iii periplasmic siderophore binding protein
Author: r. shi, a. matte, m. cygler, montreal-kingston bacterial structural genomics initiative (bsgi)
Keywords: closed form, group iii periplasmic binding protein, structural genomics, montreal-kingston bacterial structural genomics initiative, bsgi, metal transport
3bft.pdb. membrane protein 23-nov-07 3bft Cl Zn Na As
Title: structure of the ligand-binding core of glur2 in complex with the agonist (s)-tdpa at 2.25 a resolution
Author: m. beich-frandsen, o. mirza, b. vestergaard, m. gajhede, j. s. kastrup
Keywords: postsynaptic cell membrane, rna editing, synapse, transmembrane, transport, membrane protein
3bgm.pdb. immune system 27-nov-07 3bgm
Title: crystal structure of pkd2 phosphopeptide bound to human class i mhc hla-a2
Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
Keywords: phosphoprotein, serine/threonine-protein kinase, immune system
3bh8.pdb. immune system 28-nov-07 3bh8
Title: crystal structure of rqa_m phosphopeptide bound to human class i mhc hla-a2
Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
Keywords: phosphoprotein, immune system
3bh9.pdb. immune system 28-nov-07 3bh9 Na
Title: crystal structure of rty phosphopeptide bound to human class i mhc hla-a2
Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
Keywords: phosphoprotein, immune system
3bhb.pdb. immune system 28-nov-07 3bhb
Title: crystal structure of kmd phosphopeptide bound to human class i mhc hla-a2
Author: f. mohammed, m. cobbold, a. l. zarling, m. salim, g. a. barrett-wilt, j. shabanowitz, d. f. hunt, v. h. engelhard, b. e. willcox
Keywords: phosphoprotein, immune system
3bjy.pdb. transferase/dna 05-dec-07 3bjy Mg
Title: catalytic core of rev1 in complex with dna (modified template guanine) and incoming nucleotide
Author: d. t. nair, r. e. johnson, l. prakash, s. prakash, a. k. aggarwal
Keywords: protein-dna complex, adduct, bypass, dna damage, dna repair, dna synthesis, dna-binding, magnesium, metal-binding, nucleotidyltransferase, nucleus, transferase, transferase/dna complex
3bmb.pdb. rna binding protein 12-dec-07 3bmb Cl
Title: crystal structure of a new rna polymerase interacting protein
Author: s. a. darst, v. lamour
Keywords: elongation factor, anti-gre factor, rna binding protein
3bnk.pdb. electron transport 14-dec-07 3bnk
Title: x-ray crystal structure of flavoredoxin from methanosarcina acetivorans
Author: suharti, k. s. murakami, j. g. ferry
Keywords: electron transport
3bnv.pdb. unknown function 14-dec-07 3bnv Se
Title: crystal structure of cj0977, a sigma28-regulated virulence protein from campylobacter jejuni.
Author: t. yokoyama, h. j. yeo
Keywords: hot-dog fold, campylobacter jejuni, flagella, unknown function
3c8f.pdb. oxidoreductase 11-feb-08 3c8f Fe
Title: 4fe-4s-pyruvate formate-lyase activating enzyme with partially disordered adomet
Author: j. l. vey, c. l. drennan
Keywords: sam radical, activase, glycyl radical, 4fe- 4s, carbohydrate metabolism, cytoplasm, glucose metabolism, iron, iron-sulfur, metal-binding, oxidoreductase, s- adenosyl-l-methionine
3cb8.pdb. oxidoreductase 21-feb-08 3cb8 Na Fe
Title: 4fe-4s-pyruvate formate-lyase activating enzyme in complex with adomet and a peptide substrate
Author: j. l. vey, c. l. drennan
Keywords: sam radical, activase, glycyl radical, partial tim barrel, 4fe-4s, carbohydrate metabolism, cytoplasm, glucose metabolism, iron, iron-sulfur, metal- binding, oxidoreductase, s-adenosyl-l-methionine
3cdu.pdb. transferase 27-feb-08 3cdu Cl
Title: crystal structure of coxsackievirus b3 rna-dependent rna polymerase (3dpol) in complex with a pyrophosphate
Author: a. gruez, b. selisko, m. roberts, g. bricogne, c. bussetta, b. canard
Keywords: rna-dependent rna polymerase, vizier viral enzymes involved in replication, transferase
3cdw.pdb. transferase/viral protein 27-feb-08 3cdw Cl
Title: crystal structure of coxsackievirus b3 rna-dependent rna polymerase (3dpol) in complex with protein primer vpg and a pyrophosphate
Author: a. gruez, b. selisko, m. roberts, g. bricogne, c. bussetta, b. canard
Keywords: rna-dependent rna polymerase, protein primer, vpg, vizier viral enzymes involved in replication, transferase/viral protein complex
3chm.pdb. plant protein 10-mar-08 3chm Mg
Title: crystal structure of pci domain from a. thaliana cop9 signalosome subunit 7 (csn7)
Author: m. dessau, j. a. hirsch
Keywords: winged helix motif, alternative splicing, cytoplasm, developmental protein, nucleus, phosphoprotein, phytochrome signaling pathway, signalosome, plant protein
3clx.pdb. ligase, apoptosis 20-mar-08 3clx Zn
Title: crystal structure of xiap bir3 domain in complex with a smac-mimetic compound, smac005
Author: m. milani, e. mastrangelo, f. cossu
Keywords: apoptosis, cytoplasm, ligase, metal-binding, phosphoprotein, polymorphism, protease inhibitor, thiol protease inhibitor, ubl conjugation, ubl conjugation pathway
3cm2.pdb. ligase, apoptosis 20-mar-08 3cm2 Zn
Title: crystal structure of xiap bir3 domain in complex with a smac-mimetic compound, smac010
Author: f. cossu, e. mastrangelo, m. milani
Keywords: apoptosis, cytoplasm, ligase, metal-binding, phosphoprotein, polymorphism, protease inhibitor, thiol protease inhibitor, ubl conjugation, ubl conjugation pathway
3cm7.pdb. ligase, apoptosis 21-mar-08 3cm7 Zn
Title: crystal structure of xiap-bir3 domain in complex with smac- mimetic compuond, smac005
Author: e. mastrangelo, f. cossu, m. milani
Keywords: apoptosis, cytoplasm, ligase, metal-binding, phosphoprotein, polymorphism, protease inhibitor, thiol protease inhibitor, ubl conjugation, ubl conjugation pathway
3cn0.pdb. hormone, transport protein 24-mar-08 3cn0
Title: human transthyretin (ttr) in complex with 3,5-dimethyl-4- hydroxystilbene
Author: s. connelly
Keywords: transport protein
3cn1.pdb. hormone, transport protein 24-mar-08 3cn1 Br
Title: human transthyretin (ttr) in complex with 3,5-dibromo-4- hydroxystilbene
Author: s. connelly
Keywords: tetramer, hormone, transport protein
3cn2.pdb. hormone, transport protein 24-mar-08 3cn2 Br
Title: human transthyretin (ttr) in complex with 3,5-dibromo-4- hydroxybiphenyl
Author: s. connelly
Keywords: tetramer, hormone, transport protein
3cn3.pdb. hormone, transport protein 24-mar-08 3cn3 Br
Title: human transthyretin (ttr) in complex with 1,3-dibromo-2- hydroxy-5-phenoxybenzene
Author: s. connelly
Keywords: tetramer, hormone, transport protein
3cn4.pdb. hormone, transport protein 24-mar-08 3cn4 Br
Title: human transthyretin (ttr) in complex with n-(3,5-dibromo-4- hydroxyphenyl)benzamide
Author: s. connelly
Keywords: tetramer, hormone, transport protein
3cp5.pdb. electron transport 31-mar-08 3cp5 Fe
Title: cytochrome c from rhodothermus marinus
Author: m. stelter, a. melo, l. saraiva, m. teixeira, m. archer
Keywords: electron transfer protein, electron transport
3cv7.pdb. oxidoreductase 18-apr-08 3cv7 Cl
Title: crystal structure of porcine aldehyde reductase ternary complex
Author: v. carbone, o. el-kabbani
Keywords: aldo-keto reductase, ternary complex, acetylation, nadp, oxidoreductase
3cx6.pdb. signaling protein 23-apr-08 3cx6 Mg
Title: crystal structure of pdzrhogef rgrgs domain in a complex with galpha-13 bound to gdp
Author: s. r. sprang, z. chen
Keywords: signaling protein
3cx7.pdb. signaling protein 23-apr-08 3cx7 Mg F Al
Title: crystal structure of pdzrhogef rgrgs domain in a complex with galpha-13 bound to gdp-alf4
Author: s. r. sprang, z. chen
Keywords: protein complex, signaling protein
3cx8.pdb. signaling protein 23-apr-08 3cx8 Mg
Title: crystal structure of pdzrhogef rgrgs domain in a complex with galpha-13 bound to gtp-gamma-s
Author: s. r. sprang, z. chen
Keywords: signaling protein
3d2d.pdb. oxidoreductase 08-may-08 3d2d
Title: structure of berberine bridge enzyme in complex with (s)- reticuline
Author: a. winkler, a. lyskowski, p. macheroux, k. gruber
Keywords: n-glycosylation, substrate complex, alakloid biosynthesis, oxidoreductase
3d2h.pdb. oxidoreductase 08-may-08 3d2h
Title: structure of berberine bridge enzyme from eschscholzia californica, monoclinic crystal form
Author: a. winkler, a. lyskowski, p. macheroux, k. gruber
Keywords: n-glycosylation, alakloid biosynthesis, p-cresol methylhydroxylase superfamily, oxidoreductase
3d2j.pdb. oxidoreductase 08-may-08 3d2j Mg
Title: structure of berberine bridge enzyme from eschscholzia californica, tetragonal crystal form
Author: a. winkler, a. lyskowski, p. macheroux, k. gruber
Keywords: n-glycosylation, alakloid biosynthesis, p-cresol methylhydroxylase superfamily, oxidoreductase
3d40.pdb. transferase 13-may-08 3d40
Title: crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with diphosphate
Author: s. pakhomova, s. g. bartlett, a. augustus, t. kuzuyama, m. e. newcomer
Keywords: antibiotic resistance, kinase, phosphoryl transfer, transferase
3d41.pdb. transferase 13-may-08 3d41 Mg
Title: crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with mgamppnp and fosfomycin
Author: s. pakhomova, s. g. bartlett, a. augustus, t. kuzuyama, m. e. newcomer
Keywords: antibiotic resistance, kinase, phosphoryl transfer, transferase
3d48.pdb. hormone/hormone receptor 14-may-08 3d48
Title: crystal structure of a prolactin receptor antagonist bound to the extracellular domain of the prolactin receptor
Author: l. a. svensson, j. breinholt
Keywords: four-helix bundle, glycoprotein, hormone, lactation, secreted, alternative splicing, membrane, receptor, transmembrane, hormone/hormone receptor complex
3d4m.pdb. oxidoreductase 14-may-08 3d4m
Title: glutaredoxin 2 oxidized structure
Author: k. f. discola, m. a. de oliveira, j. a. barcena, p. porras, b. g. guimaraes, l. e. s. netto
Keywords: cytoplasm, electron transport, mitochondrion, redox- active center, transit peptide, transport, oxidoreductase
3d5j.pdb. oxidoreductase 16-may-08 3d5j
Title: structure of yeast grx2-c30s mutant with glutathionyl mixed disulfide
Author: k. f. discola, m. a. de oliveira, j. a. barcena, p. porras, c. a. padilla, b. g guimaraes, l. e. s. netto
Keywords: cytoplasm, electron transport, mitochondrion, redox-active center, transit peptide, transport, oxidoreductase
3d8p.pdb. transferase 23-may-08 3d8p Ca Se
Title: crystal structure of acetyltransferase of gnat family (np_373092.1) from staphylococcus aureus mu50 at 2.20 a resolution
Author: joint center for structural genomics, joint center for structural genomics (jcsg)
Keywords: acetyltransferase of gnat family, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, acetyltransferase (gnat) family
3db7.pdb. structural genomics, unknown function 30-may-08 3db7 Ca Se
Title: crystal structure of putative calcium-regulated periplasmic protein of unknown function (np_809836.1) from bacteriodes thetaiotaomicron vpi-5482 at 1.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative calcium-regulated periplasmic protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
3din.pdb. membrane protein, protein transport 20-jun-08 3din Mg F Be
Title: crystal structure of the protein-translocation complex formed by the secy channel and the seca atpase
Author: j. zimmer, t. a. rapoport
Keywords: membrane protein, atpase, atp- binding, cytoplasm, inner membrane, nucleotide-binding, protein transport, transport, transmembrane
3dop.pdb. oxidoreductase 05-jul-08 3dop
Title: crystal structure of 5beta-reductase (akr1d1) in complex with nadp+ and 5beta-dihydrotestosterone, resolution 2.00a
Author: l. di costanzo, j. e. drury, t. m. penning, d. w. christianson
Keywords: bile acid catabolism, cytoplasm, disease mutation, intrahepatic cholestasis, lipid metabolism, nadp, oxidoreductase, steroid metabolism
3drp.pdb. transferase 11-jul-08 3drp Cl
Title: hiv reverse transcriptase in complex with inhibitor r8e
Author: y. yan, s. prasad
Keywords: non-nucleoside inhibition, nucleotidyltrasferase, hydrolase, transferase
3drr.pdb. transferase 11-jul-08 3drr Cl
Title: hiv reverse transcriptase y181c mutant in complex with inhibitor r8e
Author: y. yan
Keywords: non-nucleoside inhibition, nucleotidyltrasferase, hydrolase, transferase
3drs.pdb. transferase 11-jul-08 3drs Cl
Title: hiv reverse transcriptase k103n mutant in complex with inhibitor r8d
Author: y. yan, s. prasad
Keywords: non-nucleoside inhibition, nucleotidyltrasferase, hydrolase, transferase
3ds9.pdb. hydrolase, toxin 11-jul-08 3ds9 Zn Ni
Title: a potent peptidomimetic inhibitor of botulinum neurotoxin serotype a has a very different conformation than snap-25 substrate
Author: j. e. zuniga, t. fenn
Keywords: botulism, inhibition, metalloprotease, neurotransmission, neuromuscular junction, hydrolase, membrane, metal-binding, neurotoxin, pharmaceutical, protease, secreted, toxin, transmembrane, zinc
3dse.pdb. hydrolase 11-jul-08 3dse Zn Ni
Title: a potent peptidomimetic inhibitor of botulinum neurotoxin serotype a has a very different conformation than snap-25 substrate
Author: j. e. zuniga, t. fenn
Keywords: botulism, inhibition, metalloprotease, neurotransmission, neuromuscular junction, hydrolase, membrane, metal-binding, neurotoxin, pharmaceutical, protease, secreted, toxin, transmembrane, zinc
3dwc.pdb. hydrolase 22-jul-08 3dwc Co
Title: trypanosoma cruzi metallocarboxypeptidase 1
Author: g. niemirowicz, d. fernandez, m. sola, j. j. cazzulo, f. x. aviles, f. x. gomis-ruth
Keywords: cowrin family of metallocarboxypeptidases, carboxypeptidase, hydrolase
3dxb.pdb. splicing, transcription 24-jul-08 3dxb Cl
Title: structure of the uhm domain of puf60 fused to thioredoxin
Author: l. corsini, m. hothorn, k. scheffzek, g. stier, m. sattler
Keywords: alternative splicing, fbp interacting repressor, uhm, rrm, electron transport, redox-active center, transport, transcription
3dy0.pdb. blood clotting, hydrolase inhibitor 25-jul-08 3dy0
Title: crystal structure of cleaved pci bound to heparin
Author: w. li, j. a. huntington
Keywords: blood clotting, hydrolase inhibitor
3dym.pdb. hydrolase 28-jul-08 3dym Mg Na
Title: e. coli (lacz) beta-galactosidase (h418e)
Author: d. h. juers, r. e. huber, b. w. matthews
Keywords: glycosidase, hydrolase
3dyo.pdb. hydrolase 28-jul-08 3dyo Mg Na
Title: e. coli (lacz) beta-galactosidase (h418n) in complex with iptg
Author: d. h. juers, r. e. huber, b. w. matthews
Keywords: glycosidase, hydrolase
3dyp.pdb. hydrolase 28-jul-08 3dyp Mg Na
Title: e. coli (lacz) beta-galactosidase (h418n)
Author: d. h. juers, r. e. huber, b. w. matthews
Keywords: glycosidase, hydrolase
3dzu.pdb. transcription/dna 30-jul-08 3dzu Cl Zn
Title: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound with bvt.13, 9-cis retinoic acid and ncoa2 peptide
Author: v. chandra, p. huang, y. hamuro, s. raghuram, y. wang, t. p. burris, f. rastinejad
Keywords: disease mutation, obesity, phosphoprotein, transcription/dna complex
3dzy.pdb. transcription/dna 30-jul-08 3dzy Zn
Title: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide
Author: v. chandra, p. huang, y. hamuro, s. raghuram, y. wang, t. p. burris, f. rastinejad
Keywords: disease mutation, obesity, phosphoprotein, transcription/dna complex
3e00.pdb. transcription/dna 30-jul-08 3e00 Cl Zn
Title: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound with gw9662, 9-cis retinoic acid and ncoa2 peptide
Author: v. chandra, p. huang, y. hamuro, s. raghuram, y. wang, t. p. burris, f. rastinejad
Keywords: disease mutation, obesity, phosphoprotein, transcription/dna complex
3e07.pdb. cytokine 31-jul-08 3e07
Title: crystal structure of spatzle cystine knot
Author: a. hoffmann, a. funkner, p. neumann, s. juhnke, m. walther, a. schierhorn, u. weininger, j. balbach, g. reuter, m. t. stubbs
Keywords: toll ligand, alternative splicing, antimicrobial, cytokine, developmental protein, fungicide, glycoprotein, secreted
3e3d.pdb. hydrolase 07-aug-08 3e3d I
Title: structure of hen egg white lysozyme with the magic triangle i3c
Author: t. beck, t. gruene, g. m. sheldrick
Keywords: 5-amino-2,4,6-triiodoisophthalic acid, i3c, magic triangle, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
3e3s.pdb. plant protein 08-aug-08 3e3s I K
Title: structure of thaumatin with the magic triangle i3c
Author: t. beck, t. gruene, g. m. sheldrick
Keywords: 5-amino-2,4,6-triiodoisophthalic acid, magic triangle, i3c, plant protein
3e3t.pdb. hydrolase 08-aug-08 3e3t I Na
Title: structure of porcine pancreatic elastase with the magic triangle i3c
Author: t. beck, t. gruene, g. m. sheldrick
Keywords: 5-amino-2,4,6-triiodoisophthalic acid, magic triangle, i3c, calcium, hydrolase, metal-binding, protease, secreted, serine protease, zymogen
3e3w.pdb. hydrolase 08-aug-08 3e3w F
Title: crystal structure of human beta secretase complexed with spiropiperdine imidohydantoin inhibitor.
Author: s. munshi
Keywords: bace, alternative splicing, glycoprotein, hydrolase, membrane, transmembrane, zymogen
3e5a.pdb. transferase 13-aug-08 3e5a
Title: crystal structure of aurora a in complex with vx-680 and tpx2
Author: b. zhao, a. smallwood, z. lai
Keywords: serine/threonine-protein kinase, cofactor, tpx2, vx-680, inhibitor, phosphorylation, atp-binding, cell cycle, nucleotide-binding, phosphoprotein, polymorphism, transferase, nucleus
3e7v.pdb. transferase 19-aug-08 3e7v Cl Ni
Title: crystal structure of human haspin with a pyrazolo- pyrimidine ligand
Author: p. filippakopoulos, j. eswaran, t. keates, n. burgess-brown, o. fedorov, a. c. w. pike, f. von delft, c. h. arrowsmith, a. m. edwards, m. wickstroem, c. bountra, s. knapp, structural genomics consortium (sgc)
Keywords: magnesium, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine- protein kinase, transferase
3ecj.pdb. oxidoreductase 31-aug-08 3ecj Cl Fe Ca
Title: structure of e323l mutant of homoprotocatechuate 2,3- dioxygenase from brevibacterium fuscum at 1.65a resolution
Author: e. g. kovaleva, j. d. lipscomb
Keywords: oxygenase, extradiol, feii, crystal packing, dioxygenase
3eck.pdb. oxidoreductase 31-aug-08 3eck Cl Fe Ca
Title: structure of e323l homoprotocatechuate 2,3-dioxygenase from brevibacterium fuscum in complex with putative o-o bond cleavage intermediate formed via in crystallo reaction with 4-sulfonyl catechol at low oxygen concentrations
Author: e. g. kovaleva, j. d. lipscomb
Keywords: oxygenase, extradiol, feii, crystal packing, dioxygenase
3edq.pdb. hydrolase 03-sep-08 3edq
Title: crystal structure of caspase-3 with inhibitor ac-ldesd-cho
Author: g. fu
Keywords: cysteine protease, apoptosis, induced fit, cytoplasm, hydrolase, phosphoprotein, polymorphism, protease, s-nitrosylation, thiol protease, zymogen
3edr.pdb. hydrolase 03-sep-08 3edr
Title: the crystal structure of caspase-7 in complex with acetyl- ldesd-cho
Author: j. agniswamy
Keywords: peptide inhibitor, alternative splicing, apoptosis, cytoplasm, hydrolase, protease, thiol protease, zymogen
3efy.pdb. cell cycle 10-sep-08 3efy
Title: structure of the cyclomodulin cif from pathogenic escherichia coli
Author: c. e. stebbins, y. hsu
Keywords: cell cycle, bacteria, virulence factor, type iii secretion, e. coli, plasmid
3egz.pdb. ribonucleic acid 11-sep-08 3egz Cl Mg Se
Title: crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch
Author: h. xiao, t. e. edwards, a. r. ferre-d'amare
Keywords: aptamer, riboswitch, antibiotic, rna
3ejb.pdb. oxidoreductase/lipid transport 18-sep-08 3ejb Cl Fe
Title: crystal structure of p450bioi in complex with tetradecanoic acid ligated acyl carrier protein
Author: m. j. cryle, i. schlichting
Keywords: oxidoreductase, oxidoreductase/lipid transport complex
3ejd.pdb. oxidoreductase/lipid transport 18-sep-08 3ejd Cl Fe
Title: crystal structure of p450bioi in complex with hexadec-9z- enoic acid ligated acyl carrier protein
Author: m. j. cryle, i. schlichting
Keywords: oxidoreductase, oxidoreductase/lipid transport complex
3eje.pdb. oxidoreductase/lipid transport 18-sep-08 3eje Fe
Title: crystal structure of p450bioi in complex with octadec-9z- enoic acid ligated acyl carrier protein
Author: m. j. cryle, i. schlichting
Keywords: oxidoreductase, oxidoreductase/lipid transport complex
3el7.pdb. transferase 20-sep-08 3el7 F
Title: crystal structure of c-src in complex with pyrazolopyrimidine 3
Author: a. c. dar, m. s. lopez, k. m. shokat
Keywords: c-src, pyrazolopyrimidine, alternative splicing, atp-binding, lipoprotein, myristate, nucleotide-binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase, tyrosine-protein kinase
3el8.pdb. transferase 20-sep-08 3el8 F
Title: crystal structure of c-src in complex with pyrazolopyrimidine 5
Author: a. c. dar, m. s. lopez, k. m. shokat
Keywords: tyrosine-protein kinase
3emk.pdb. oxidoreductase 24-sep-08 3emk
Title: 2.5a crystal structure of glucose/ribitol dehydrogenase from brucella melitensis
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: melitensis, glucose, ribitol, dehydrogenase, seattle structural genomics center for infectious disease, ssgcid, oxidoreductase
3emw.pdb. apoptosis 25-sep-08 3emw
Title: crystal structure of human spla/ryanodine receptor domain and socs box containing 2 (spsb2) in complex with a 20- residue vasa peptide
Author: p. filippakopoulos, t. sharpe, t. keates, j. w. murray, p. savitsky, a. k. roos, a. c. w. pike, f. von delft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, s. knapp, a. bullock, structural genomics consortium (sgc)
Keywords: structural genomics consortium, sgc
3en4.pdb. transferase 25-sep-08 3en4
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp121, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
3en5.pdb. transferase 25-sep-08 3en5
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp494, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
3en6.pdb. transferase 25-sep-08 3en6
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp102, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
3en7.pdb. transferase 25-sep-08 3en7
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with s1, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
3enc.pdb. unknown function 25-sep-08 3enc Se
Title: crystal structure of pyrococcus furiosus pcc1 dimer
Author: d. neculai
Keywords: keops, telomere, unknown function
3ene.pdb. transferase 25-sep-08 3ene
Title: complex of pi3k gamma with an inhibitor
Author: b. apsel, j. a. blair, b. z. gonzalez, t. m. nazif, m. e. feldman, r. l. williams, k. m. shokat, z. a. knight
Keywords: phosphoinositide, inhibitor, 3-kinase, signaling, pyrazolopyrimidine, pik-208, s2, kinase, transferase
3enh.pdb. hydrolase/unknown function 25-sep-08 3enh Ta Br
Title: crystal structure of cgi121/bud32/kae1 complex
Author: d. neculai
Keywords: metal-binding, metalloprotease, protease, zinc, dimerization domain, keops, telomere, transcription, hydrolase/unknown function complex
3enk.pdb. isomerase 25-sep-08 3enk
Title: 1.9a crystal structure of udp-glucose 4-epimerase from burkholderia pseudomallei
Author: seattle structural genomics center for infectious disease (ssgcid)
Keywords: pseudomallei, udp-glucose, epimerase, seattle structural genomics center for infectious disease, ssgcid, isomerase, nad
3eno.pdb. hydrolase/unknown function 25-sep-08 3eno Mg
Title: crystal structure of pyrococcus furiosus pcc1 in complex with thermoplasma acidophilum kae1
Author: d. neculai
Keywords: metal-binding, metalloprotease, protease, zinc, keops complex, atpase, metal ion binding, dimerization module, telomere, hydrolase/unknown function complex
3eo7.pdb. oxidoreductase 26-sep-08 3eo7 Cl Ca Se
Title: crystal structure of putative nitroreductase (yp_322669.1) from anabaena variabilis atcc 29413 at 1.80 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative nitroreductase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, oxidoredutase, oxidoreductase
3eog.pdb. ribonucleic acid 26-sep-08 3eog Mg K
Title: co-crystallization showing exon recognition by a group ii intron
Author: n. toor, k. rajashankar, k. s. keating, a. m. pyle
Keywords: ribonucleic acid, intron, group ii, exon
3eoh.pdb. ribonucleic acid 26-sep-08 3eoh Mg K
Title: refined group ii intron structure
Author: n. toor, k. rajashankar, k. s. keating, a. m. pyle
Keywords: ribonucleic acid, intron, group ii, exon
3epm.pdb. biosynthetic protein 29-sep-08 3epm Zn Se
Title: crystal structure of caulobacter crescentus thic
Author: s. li, a. chatterjee, y. zhang, t. l. grove, m. lee, c. krebs, s. j. booker, t. p. begley, s. e. ealick
Keywords: sam superfamily, thiamine biosynthesis, biosynthetic protein
3epn.pdb. biosynthetic protein 29-sep-08 3epn
Title: crystal structure of caulobacter crescentus thic complexed with imidazole ribonucleotide
Author: s. li, a. chatterjee, y. zhang, t. l. grove, m. lee, c. krebs, s. j. booker, t. p. begley, s. e. ealick
Keywords: sam superfamily, thiamine biosynthesis, biosynthetic protein
3epo.pdb. biosynthetic protein 29-sep-08 3epo
Title: crystal structure of caulobacter crescentus thic complexed with hmp-p
Author: s. li, a. chatterjee, y. zhang, t. l. grove, m. lee, c. krebs, s. j. booker, t. p. begley, s. e. ealick
Keywords: sam superfamily, thiamine biosynthesis, biosynthetic protein
3eq6.pdb. ligase 30-sep-08 3eq6
Title: crystal structure of human acyl-coa synthetase medium-chain family member 2a (l64p mutation) in a ternary complex with products
Author: e. s. pilka, g. t. kochan, w. w. yue, c. bhatia, f. von delft, c. h. arrowsmith, a. m. edwards, j. weigelt, c. bountra, u. oppermann, structural genomics consortium (sgc)
Keywords: structural genomics, sgc, structural genomics consortium
3eql.pdb. transferase 30-sep-08 3eql Mg Zn
Title: crystal structure of the t. thermophilus rna polymerase holoenzyme in complex with antibiotic myxopyronin
Author: d. g. vassylyev, m. n. vassylyeva, i. artsimovitch
Keywords: myxopyronin, antibiotic, transcription regulation, dna-directed rna polymerase, nucleotidyltransferase, transcription, transferase, dna- binding, sigma factor
3es6.pdb. cell adhesion 04-oct-08 3es6
Title: crystal structure of the novel complex formed between zinc 2-glycoprotein (zag) and prolactin inducible protein (pip) from human seminal plasma
Author: m. i. hassan, s. bilgrami, v. kumar, n. singh, s. yadav, p. kaur, t. p. singh
Keywords: protein-protein complex, prolactin inducible protein, zinc 2-glycoprotein, zag-pip complex, glycoprotein, pyrrolidone carboxylic acid, secreted, actin-binding, cell adhesion
3esh.pdb. hydrolase 06-oct-08 3esh Se
Title: crystal structure of a probable metal-dependent hydrolase from staphylococcus aureus. northeast structural genomics target zr314
Author: j. seetharaman, y. chen, h. wang, h. janjua, e. l. foote, r. xiao, r. nair, j. k. everett, t. b. acton, b. rost, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, hydrolase
3ewl.pdb. structural genomics, unknown function 15-oct-08 3ewl Se
Title: crystal structure of conserved protein bf1870 of unknown function from bacteroides fragilis
Author: y. kim, c. tesar, g. cobb, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
3exd.pdb. hydrolase 16-oct-08 3exd
Title: sulfur-sad phased hewl crystal
Author: a. s. nascimento, m. v. liberato, i. polikarpov
Keywords: sulfur, sad phasing, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase
3exz.pdb. lyase 17-oct-08 3exz Se
Title: crystal structure of the maoc-like dehydratase from rhodospirillum rubrum. northeast structural genomics consortium target rrr103a.
Author: s. m. vorobiev, m. su, j. seetharaman, h. wang, e. l. foote, c. ciccosanti, h. janjua, r. xiao, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, lyase

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