Recent PDB releases or updates: week of 17 October 2008
- 1zq5.pdb.
oxidoreductase 18-may-05 1zq5
Title: crystal structure of human androgenic 17beta-hydroxysteroid dehydrogenase type 5 in complexed with a potent inhibitor em1404
Author: w. qiu, m. zhou, d. ghanmi, v. luu-the, f. labrie, s. -x. lin
- 2a2n.pdb.
isomerase 22-jun-05 2a2n
Title: crystal structure of the peptidylprolyl isomerase domain of human ppwd1
Author: j. r. walker, t. davis, e. m. newman, f. mackenzie, m. sundstrom, c. arrowsmith, a. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: protein-folding, peptidylprolyl isomerase, structural genomics, structural genomics consortium, sgc
- 2dkk.pdb.
oxidoreductase 12-apr-06 2dkk
Fe
Title: structure/function studies of cytochrome p450 158a1 from streptomyces coelicolor a3(2)
Author: b. zhao
Keywords: cytochrome p450 oxidoreductase, cyp158a1, inhibitor
- 2f1o.pdb.
oxidoreductase 15-nov-05 2f1o
Title: crystal structure of nqo1 with dicoumarol
Author: s. yosef, a. gad, d. orly, t. peter, a. julia, israel structural proteomics center (ispc)
Keywords: structural genomics, israel structural proteomics center, ispc
- 2fgb.pdb.
oxidoreductase 21-dec-05 2fgb
Title: crystal structure of human 17bet a-hydroxysteroid dehydrogenase type 5 in complexes with peg and nadp
Author: w. qiu, m. zhou, a. azzi, v. luu-the, f. labrie, s. x. lin
- 2i5q.pdb.
lyase 25-aug-06 2i5q
Title: crystal structure of apo l-rhamnonate dehydratase from escherichia coli
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: clone name 9265b1bct1p1_10997_1, structural genomics, psi, protein structure initiative, new york structural genomix research consortium, nysgxrc
- 2inx.pdb.
isomerase 09-oct-06 2inx
F
Title: crystal structure of ketosteroid isomerase d40n from pseudomonas putida (pksi) with bound 2,6-difluorophenol
Author: j. m. martinez caaveiro, b. pybus, d. ringe, g. a. petsko, p. sigala, d. kraut, d. herschlag
Keywords: enzyme, active site, binding, charge distribution, hydrogen bond, isomerase
- 2jk4.pdb.
transport 15-aug-08 2jk4
Title: structure of the human voltage-dependent anion channel
Author: m. bayrhuber, t. meins, m. habeck, s. becker, k. giller, s. villinger, c. vonrhein, c. griesinger, m. zweckstetter, k. zeth
Keywords: mitochondrion, cell membrane
- 2js9.pdb.
antimicrobial protein 02-jul-07 2js9
He Hg
(NMR, 15 structures)
Title: structure of caenopore-5 (81 pro cis conformer)
Author: j. mysliwy, j. grotzinger
Keywords: saposin-like fold, antimicrobial protein
- 2jsa.pdb.
antimicrobial protein 02-jul-07 2jsa
He Hg
(NMR, 15 structures)
Title: solution structure of caenopore-5 (81 pro trans confomer)
Author: j. mysliwy, j. grotzinger
Keywords: saposin-like fold, antimicrobial protein
- 2jtt.pdb.
calcium binding protein/antitumor protei06-aug-07 2jtt
He Hg
(NMR, 20 structures)
Title: solution structure of calcium loaded s100a6 bound to c- terminal siah-1 interacting protein
Author: y. lee, w. j. chazin
Keywords: calcium binding protein/antitumor protein complex
- 2jvc.pdb.
unknown function 17-sep-07 2jvc
He Hg
(NMR, 10 structures)
Title: nmr solution structure of ubiquitin like protein
Author: n. b. tran, y. liu, l. c. hew
Keywords: unknown function
- 2jvv.pdb.
transcription 26-sep-07 2jvv
He Hg
(NMR, 20 structures)
Title: solution structure of e. coli nusg carboxyterminal domain
Author: k. schweimer, u. scheckenhofer, p. roesch
Keywords: transcription factor, transcription antitermination, transcription regulation, transcription termination
- 2k0x.pdb.
transport protein 15-feb-08 2k0x
Hg
(NMR, 20 structures)
Title: the actinorhodin holo acyl carrier protein from s. coelicolor
Author: m. p. crump, s. e. evans, c. williams
Keywords: polyketide, holo, phosphopantetheine, antibiotic biosynthesis, transport protein
- 2k0y.pdb.
transport protein 15-feb-08 2k0y
Hg
(NMR, 20 structures)
Title: the actinorhodin apo acyl carrier protein from s. coelicolor
Author: m. p. crump, s. e. evans, w. christopher
Keywords: actinorhodin, polyketide, antibiotic, antibiotic biosynthesis, phosphopantetheine, transport protein
- 2k4g.pdb.
peptide nucleic acid 07-jun-08 2k4g
(NMR, 11 structures)
Title: solution structure of a peptide nucleic acid duplex, 10 structures
Author: w. he, e. hatcher, a. balaeff, d. beratan, r. gil, m. madrid, c. achim
Keywords: pna, pna-pna duplex, left-handed duplex, p-form
- 2k73.pdb.
membrane protein, oxidoreductase 01-aug-08 2k73
He Hg
(NMR, 20 structures)
Title: solution nmr structure of integral membrane protein dsbb
Author: y. zhou, t. cierpicki, r. h. flores jimenez, s. m. lukasik, j. f. ellena, d. s. cafiso, h. kadokura, j. beckwith, j. h. bushweller
Keywords: disulfide bond, redox enzyme, dsbb, chaperone, electron transport, inner membrane, oxidoreductase, redox-active center, transmembrane, transport
- 2k74.pdb.
membrane protein, oxidoreductase 01-aug-08 2k74
He Hg
(NMR, 20 structures)
Title: solution nmr structure of dsbb-ubiquinone complex
Author: y. zhou, t. cierpicki, r. h. flores jimenez, s. m. lukasik, j. f. ellena, d. s. cafiso, h. kadokura, j. beckwith, j. h. bushweller
Keywords: disulfide bond, redox enzyme, dsbb, ubiquinone, oxidative protein folding, chaperone, electron transport, inner membrane, oxidoreductase, redox-active center, transmembrane, transport
- 2k86.pdb.
dna binding protein 02-sep-08 2k86
He Hg
(NMR, 20 structures)
Title: solution structure of foxo3a forkhead domain
Author: f. wang, c. b. marshall, g. li, m. j. plevin, m. ikura
Keywords: dna binding protein
- 2k8e.pdb.
structural genomics, unknown function 08-sep-08 2k8e
He Hg
(NMR, 20 structures)
Title: solution nmr structure of protein of unknown function yegp from e. coli. ontario center for structural proteomics target ec0640_1_123 northeast structural genomics consortium target et102.
Author: c. fares, a. lemak, a. gutmanas, m. karra, a. h. yee, a. semesi, c. h. arrowsmith, northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp)
Keywords: protein structure initiative (psi), northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp), escherichia coli, structural genomics, unknown function
- 2nz5.pdb.
oxidoreductase 22-nov-06 2nz5
Fe
Title: structure and function studies of cytochrome p450 158a1 from streptomyces coelicolor a3(2)
Author: b. zhao, d. c. labm, s. l. kelly, m. r. waterman
- 2nza.pdb.
oxidoreductase 22-nov-06 2nza
Fe
Title: structure and function studies of cytochrome p450 158a1 from streptomyces coelicolor a3(2)
Author: b. zhao, m. r. waterman
- 2o4q.pdb.
hydrolase 04-dec-06 2o4q
Zn As
Title: structure of phosphotriesterase mutant g60a
Author: j. kim, u. a. ramagopal, p. tsai, f. m. raushel, s. c. almo
Keywords: tim barrel, nerve agents, hydrolase
- 2pqh.pdb.
structural protein 02-may-07 2pqh
Title: structure of sh3 chimera with a type ii ligand linked to the chain c-terminal
Author: a. g. gabdoulkhakov, l. v. gushchina, a. d. nikulin, s. v. nikonov, v. v. filimonov
Keywords: chimera, , structural protein
- 2q06.pdb.
viral protein, rna binding protein 21-may-07 2q06
Title: crystal structure of influenza a virus h5n1 nucleoprotein
Author: a. k. l. ng, h. zhang, k. tan, j. wang, p. c. shaw
Keywords: h5n1, nucleoprotein, viral protein, rna binding protein
- 2q5x.pdb.
protein transport 03-jun-07 2q5x
Title: crystal structure of the c-terminal domain of hnup98
Author: y. sun, h. c. guo
Keywords: nucleoporin, autoproteolysis, precursor, protein transport
- 2q5y.pdb.
protein transport 03-jun-07 2q5y
Title: crystal structure of the c-terminal domain of hnup98
Author: y. sun, h. c. guo
Keywords: nucleoporin, autoproteolysis, protein transport
- 2q8s.pdb.
hormone receptor 11-jun-07 2q8s
Title: x-ray crystal structure of the nuclear hormone receptor ppar-gamma in a complex with a ppar gamma/alpha dual agonist
Author: j. f. ohren
Keywords: hormone receptor
- 2qb0.pdb.
hydrolase regulator 15-jun-07 2qb0
Mn
Title: structure of the 2tel crystallization module fused to t4 lysozyme with an ala-gly-pro linker.
Author: s. nauli, j. u. bowie
Keywords: hydrolase regulator
- 2qb1.pdb.
hydrolase regulator 15-jun-07 2qb1
Title: 2tel crystallization module
Author: s. nauli, j. u. bowie
Keywords: hydrolase regulator
- 2qc5.pdb.
lyase 19-jun-07 2qc5
I
Title: streptogramin b lyase structure
Author: m. lipka, m. bochtler
Keywords: lyase
- 2qef.pdb.
deoxyribonucleic acid 25-jun-07 2qef
Title: x-ray structure of 7-deaza-dg and z3du modified duplex cgcgaatxczcg
Author: f. wang, f. li, m. ganguly, l. a. marky, b. gold, m. egli, m. p. stone
Keywords: z3du, 7-deaza-dg
- 2qeg.pdb.
deoxyribonucleic acid 25-jun-07 2qeg
Title: b-dna with 7-deaza-dg modification
Author: f. wang, f. li, m. ganguly, l. a. marky, b. gold, m. egli, m. p. stone
Keywords: 7-deaza-dg
- 2qfp.pdb.
hydrolase 27-jun-07 2qfp
F Zn Na Fe
Title: crystal structure of red kidney bean purple acid phosphatase in complex with fluoride
Author: l. w. guddat, g. s. schenk, l. r. gahan, t. w. elliot, e. leung
Keywords: fe-zn, hydrolase
- 2qfr.pdb.
hydrolase 27-jun-07 2qfr
Zn Fe
Title: crystal structure of red kidney bean purple acid phosphatase with bound sulfate
Author: l. w. guddat, g. schenk, l. r. gahan, t. w. elliot, e. leung
Keywords: substrate analog, hydrolase
- 2r97.pdb.
oxidoreductase, electron transport 12-sep-07 2r97
Title: crystal structure of e. coli wrba in complex with fmn
Author: i. kuta smatanova, j. wolfova, j. brynda, j. r. mesters, r. grandori, j. carey
Keywords: quinone oxidoreductase, flavoprotein, flavodoxin-like fold, fmn-binding, oxidoreductase
- 2rem.pdb.
oxidoreductase 26-sep-07 2rem
Title: crystal structure of oxidoreductase dsba from xylella fastidiosa
Author: f. c. rinaldi, b. g. guimaraes
Keywords: dsba, thioredoxin fold, redox- active center
- 2rg1.pdb.
oxidoreductase, electron transport 02-oct-07 2rg1
Cl
Title: crystal structure of e. coli wrba apoprotein
Author: i. kuta smatanova, j. wolfova, j. brynda, m. lapkouski, j. r. mesters, r. grandori, j. carey
Keywords: quinone oxidoreductase, flavoprotein, flavodoxin-like fold, fmn-binding, oxidoreductase
- 2rgv.pdb.
dna binding protein 05-oct-07 2rgv
Zn
Title: the crystal structure of perr-ox highlights 2-oxo-histidine formation
Author: d. a. k. traore
Keywords: perr-ox, cytoplasm, dna-binding, manganese, oxidation, repressor, transcription, transcription regulation, zinc, dna binding protein
- 2rgw.pdb.
transferase 05-oct-07 2rgw
Title: catalytic subunit of m. jannaschii aspartate transcarbamoylase
Author: j. vitali
Keywords: pyrimidine biosynthesis, thermostability, methanococcus jannaschii, crystal structure, transferase
- 2rh3.pdb.
dna binding protein 05-oct-07 2rh3
Title: crystal structure of plasmid ptic58 virc2
Author: j. lu, j. n. m. glover
Keywords: protein, crown gall tumor, plasmid, dna binding protein
- 2ri4.pdb.
oxygen storage, oxygen transport 10-oct-07 2ri4
Fe
Title: crystal structure determination of goat methemoglobin at 2.7 angstrom
Author: p. s. moorthy, k. neelagandan, m. balasubramanian, m. n. ponnuswamy
Keywords: low oxygen affinity, allosteric mechanism, heme, iron, metal-binding, polymorphism, transport, oxygen storage, oxygen transport
- 2riv.pdb.
signaling protein 12-oct-07 2riv
Title: crystal structure of the reactive loop cleaved human thyroxine binding globulin
Author: a. zhou, z. wei, p. l. d. stanley, r. j. read, p. e. stein, r. w. carrell
Keywords: serpin, cleaved, thyroxine binding globulin, thyroxine, disease mutation, glycoprotein, polymorphism, secreted, signaling protein
- 2riw.pdb.
signaling protein 12-oct-07 2riw
I
Title: the reactive loop cleaved human thyroxine binding globulin complexed with thyroxine
Author: a. zhou, z. wei, p. l. d. stanley, r. j. read, p. e. stein, r. w. carrell
Keywords: thyroxine, complex, serpin, tbg, disease mutation, glycoprotein, polymorphism, secreted, signaling protein
- 2rj2.pdb.
ligase 14-oct-07 2rj2
Cl Ni
Title: crystal structure of the sugar recognizing scf ubiquitin ligase at 1.7 resolution
Author: s. vaijayanthimala, d. velmurugan, t. mizushima, t. yamane, y. yoshida, k. tanaka
Keywords: scf, ubiquitin ligase, lectin, ubl conjugation pathway
- 2rj3.pdb.
transferase 14-oct-07 2rj3
Title: crystal structure of the uridine phosphorylase from salmonella typhimurium in complex with uracil and phosphate ion at 2.49a resolution
Author: v. i. timofeev, b. p. pavlyuk, a. a. lashkov, a. g. gabdoulkhakov, a. m. mikhailov
Keywords: cytoplasm, glycosyltransferase, transferase
- 2rmy.pdb.
endocytosis 03-dec-07 2rmy
He Hg
(NMR, 10 structures)
Title: structure of the n-terminal barpeptide in sds micelles
Author: c. loew, u. weininger, j. balbach
Keywords: sh3 domain
- 2rnd.pdb.
endocytosis 16-dec-07 2rnd
He Hg
(NMR, 10 structures)
Title: structure of the n-terminal barpeptide in dpc micelles
Author: c. loew, u. weininger, j. balbach
Keywords: phosphoprotein, sh3 domain
- 2rng.pdb.
antimicrobial protein 27-dec-07 2rng
Hg
(NMR, 25 structures)
Title: solution structure of big defensin
Author: t. kouno, n. fujitani, t. osaki, s. kawabata, s. nishimura, m. mizuguchi, t. aizawa, m. demura, k. nitta, k. kawano
Keywords: three disulfide bridges, antibiotic, antimicrobial, fungicide, secreted, antimicrobial protein
- 2v4l.pdb.
transferase 25-sep-08 2v4l
Title: complex of human phosphoinositide 3-kinase catalytic subunit gamma (p110 gamma) with pik-284
Author: b. apsel, b. gonzalez, j. a. blair, t. m. nazif, m. e. feldman, r. l. williams, k. m. shokat, z. a. knight
Keywords: lipid kinase, phosphoinositide, pyrazolopyrimidine, s1, kinase, pik-284, 3-kinase, inhibitor, signaling
- 2va0.pdb.
transferase 28-aug-07 2va0
Cl
Title: differential regulation of the xylan degrading apparatus of cellvibrio japonicus by a novel two component system
Author: j. w. murray, k. emami, e. topakas, t. nagy, j. henshaw, k. a. jackson, k. e. nelson, e. f. mongodin, r. j. lewis, h. j. gilbert
Keywords: kinase, pas domain, carbohydrate, transferase
- 2vck.pdb.
oxidoreductase 25-sep-07 2vck
Se
Title: structure of phycoerythrobilin synthase pebs from the cyanophage p-ssm2 in complex with the bound substrate biliverdin ixa
Author: t. dammeyer, e. hofmann, n. frankenberg-dinkel
Keywords: biliverdin ixa, oxidoreductase, phycobilin reductase, phycobilin synthesis, prochlorococcus, phycoerythrobilin, biliverdin reductase, ferredoxin dependent
- 2vcl.pdb.
oxidoreductase 25-sep-07 2vcl
Se
Title: structure of phycoerythrobilin synthase pebs from the cyanophage p-ssm2 in the substrate free form
Author: t. dammeyer, e. hofmann, n. frankenberg-dinkel
Keywords: biliverdin ixa, oxidoreductase, phycobilin reductase, phycobilin synthesis, prochlorococcus, phycoerythrobilin, biliverdin reductase, ferredoxin dependent
- 2vgr.pdb.
oxidoreductase 15-nov-07 2vgr
Title: structure of the wt-phycoerythrobilin synthase pebs from the cyanophage p-ssm2 in complex with the bound substrate biliverdin ixa
Author: t. dammeyer, e. hofmann, n. frankenberg-dinkel
Keywords: biliverdin ixa, oxidoreductase, phycobilin reductase, phycobilin synthesis, prochlorococcus, phycoerythrobilin, biliverdin reductase, ferredoxin dependent
- 2vjw.pdb.
hydrolase 14-dec-07 2vjw
Se
Title: crystal structure of the second gaf domain of devs from mycobacterium smegmatis
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: histidine kinase, hypoxia sensing, hydrolase
- 2vkc.pdb.
hydrolase 18-dec-07 2vkc
He Hg
(NMR, 28 structures)
Title: solution structure of the b3bp smr domain
Author: t. diercks, e. ab, m. a. daniels, r. n. dejong, r. besseling, r. kaptein, g. e. folkers
Keywords: alternative splicing, homologous recombination, mismatch repair, small muts related, nucleotide-binding, atp-binding, ubl conjugation, phosphorylation, smr, b3bp, hydrolase, cytoplasm, coiled coil
- 2vks.pdb.
hydrolase 25-dec-07 2vks
Title: crystal structure of gaf-b domain of devs from mycobacterium smegmatis
Author: b. s. kang, h. y. cho, h. j. cho
Keywords: hypoxia sensing, histidine kinase, hydrolase
- 2vlw.pdb.
toxin 17-jan-08 2vlw
I
Title: crystal structure of the muscarinic toxin mt7 diiodotyr51 derivative.
Author: r. menez, v. granata, g. mourier, c. fruchart-gaillard, a. menez, d. servant, e. a. stura
Keywords: green mamba snake toxin, hm1 muscarinic receptor, toxin, secreted, neurotoxin, diiodotyrosine, muscarinic toxin, postsynaptic neurotoxin
- 2vrj.pdb.
hydrolase 09-apr-08 2vrj
Ca
Title: beta-glucosidase from thermotoga maritima in complex with n- octyl-5-deoxy-6-oxa-n-(thio)carbamoylcalystegine
Author: m. aguilar, t. m. gloster, m. i. garcia-moreno, c. ortiz mellet, g. j. davies, a. llebaria, j. casas, m. egido-gabas, j. m. garcia fernandez
Keywords: glycoside hydrolase, family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, cellulose degradation, carbohydrate metabolism
- 2vx2.pdb.
isomerase 30-jun-08 2vx2
Title: crystal structure of human enoyl coenzyme a hydratase domain-containing protein 3 (echdc3)
Author: w. w. yue, k. guo, g. kochan, e. pilka, j. w. murray, e. salah, r. cocking, z. sun, a. k. roos, a. c. w. pike, p. filippakopoulos, c. arrowsmith, m. wikstrom, a. edwards, c. bountra, u. oppermann
Keywords: alternative splicing, fatty acid metabolism, enoyl coenzyme a hydratase, transit peptide, lipid metabolism, crontonase, polymorphism, mitochondrion, casp
- 2vy9.pdb.
gene regulation 21-jul-08 2vy9
Se
Title: molecular architecture of the stressosome, a signal integration and transduction hub
Author: j. marles-wright, t. grant, o. delumeau, g. van duinen, s. j. firbank, p. j. lewis, j. w. murray, j. a. newman, m. b. quin, p. r. race, a. rohou, w. tichelaar, m. van heel, r. j. lewis
Keywords: gene regulation, rsbs, stressosome, stas domain, bacillus subtilis
- 2vze.pdb.
ligase 31-jul-08 2vze
Mg
Title: crystal structure of human acyl-coa synthetase medium-chain family member 2a (l64p mutation) in complex with amp
Author: w. w. yue, g. t. kochan, e. s. pilka, c. bhatia, f. von delft, c. h. arrowsmith, a. m. edwards, m. wikstrom, c. bountra, u. oppermann
Keywords: mitochondrion, metal-binding, transit peptide, lipid metabolism, nucleotide-binding, magnesium, atp-binding, polymorphism, adenylate-forming enzyme, fatty acid metabolism, fatty acid-coa ligase
- 2vzo.pdb.
hydrolase 05-aug-08 2vzo
Cd
Title: crystal structure of amycolatopsis orientalis exo- chitosanase csxa
Author: a. lammerts van bueren, m. g. ghinet, k. gregg, a. fleury, r. brzezinski, a. b. boraston
Keywords: csxa, pnp-glucosamine, glycoside hydrolase, exo-beta-d-glucosaminidase, hydrolase
- 2vzs.pdb.
hydrolase 05-aug-08 2vzs
Cd
Title: chitosan product complex of amycolatopsis orientalis exo- chitosanase csxa
Author: a. lammerts van bueren, m. g. ghinet, k. gregg, a. fleury, r. brzezinski, a. b. boraston
Keywords: hydrolase, gh2, csxa, glucosamine, glycoside hydrolase
- 2vzt.pdb.
hydrolase 05-aug-08 2vzt
Cd
Title: complex of amycolatopsis orientalis exo-chitosanase csxa e541a with pnp-beta-d-glucosamine
Author: a. lammerts van bueren, m. g. ghinet, k. gregg, a. fleury, r. brzezinski, a. b. boraston
Keywords: csxa, pnp-glucosamine, glycoside hydrolase, exo-beta-d-glucosaminidase, hydrolase
- 2vzu.pdb.
hydrolase 05-aug-08 2vzu
Cd
Title: complex of amycolatopsis orientalis exo-chitosanase csxa d469a with pnp-beta-d-glucosamine
Author: a. lammerts van bueren, m. g. ghinet, k. gregg, a. fleury, r. brzezinski, a. b. boraston
Keywords: csxa, pnp-glucosamine, glycoside hydrolase, exo-beta-d-glucosaminidase, hydrolase
- 2vzv.pdb.
hydrolase 05-aug-08 2vzv
Title: substrate complex of amycolatopsis orientalis exo- chitosanase csxa e541a with chitosan
Author: a. lammerts van bueren, m. g. ghinet, k. gregg, a. fleury, r. brzezinski, a. b. boraston
Keywords: gh2, csxa, chitosan, glycoside hydrolase, hydrolase
- 2w05.pdb.
transferase 08-aug-08 2w05
Title: structure of cdk2 in complex with an imidazolyl pyrimidine, compound 5b
Author: m. anderson, d. m. andrews, a. j. barker, c. a. brassington, j. breed, k. f. byth, j. d. culshaw, m. r. finlay, e. fisher, c. p. green, d. w. heaton, i. a. nash, n. j. newcombe, s. e. oakes, r. a. pauptit, a. roberts, j. j. stanway, a. p. thomas, j. a. tucker, h. m. weir
Keywords: mitosis, cell cycle, transferase, serine/threonine-protein kinase, atp-binding, polymorphism, cell division, phosphoprotein, phosphorylation, nucleotide-binding
- 2yye.pdb.
transferase 29-apr-07 2yye
Co
Title: crystal structure of selenophosphate synthetase
Author: y. itoh, s. sekine, e. matsumoto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, transferase
- 2yyy.pdb.
oxidoreductase 02-may-07 2yyy
Title: crystal structure of glyceraldehyde-3-phosphate dehydrogenase
Author: d. m. ali, y. bessho, b. padmanabhan, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: oxidoreductase
- 2zae.pdb.
hydrolase 04-oct-07 2zae
Zn
Title: crystal structure of protein ph1601p in complex with protein ph1771p of archaeal ribonuclease p from pyrococcus horikoshii ot3
Author: t. honda, y. kakuta, m. kimura
Keywords: hetero dimer, hydrolase, trna processing
- 2zau.pdb.
transferase 10-oct-07 2zau
Title: crystal structure of an n-terminally truncated selenophosphate synthetase from aquifex aeolicus
Author: s. sekine, e. matsumoto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2zdk.pdb.
hydrolase 26-nov-07 2zdk
Ca
Title: exploring trypsin s3 pocket
Author: b. baum, t. brandt, a. heine, g. klebe
Keywords: calcium, digestion, metal-binding, protease, secreted, serine protease, zymogen
- 2zdl.pdb.
hydrolase 26-nov-07 2zdl
Ca
Title: exploring trypsin s3 pocket
Author: b. baum, t. brandt, a. heine, g. klebe
Keywords: calcium, digestion, metal-binding, protease, secreted, serine protease, zymogen
- 2zdm.pdb.
hydrolase 26-nov-07 2zdm
Ca
Title: exploring trypsin s3 pocket
Author: b. baum, t. brandt, a. heine, g. klebe
Keywords: calcium, digestion, metal-binding, protease, secreted, serine protease, zymogen
- 2zdn.pdb.
hydrolase 26-nov-07 2zdn
Ca
Title: exploring trypsin s3 pocket
Author: b. baum, t. brandt, a. heine, g. klebe
Keywords: calcium, digestion, metal-binding, protease, secreted, serine protease, zymogen
- 2zet.pdb.
signaling protein 17-dec-07 2zet
Mg Zn Se
Title: crystal structure of the small gtpase rab27b complexed with the slp homology domain of slac2-a/melanophilin
Author: m. kukimoto-niino, a. sakamoto, e. kanno, k. hanawa-suetsugu, t. terada, m. shirouzu, m. fukuda, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: metal-binding, zinc, zinc-finger, structural genomics, nppsfa, national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi, signaling protein
- 2zjs.pdb.
protein transport/immune system 08-mar-08 2zjs
Zn
Title: crystal structure of secye translocon from thermus thermophilus with a fab fragment
Author: t. tsukazaki, h. mori, s. fukai, r. ishitani, a. perederina, d. g. vassylyev, k. ito, o. nureki
Keywords: sec, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport, protein transport/immune system complex
- 2zkd.pdb.
ligase 19-mar-08 2zkd
Title: crystal structure of the sra domain of mouse np95 in complex with hemi-methylated cpg dna
Author: k. arita, m. ariyoshi, h. tochio, y. nakamura, m. shirakawa
Keywords: ubl conjugation pathway, zinc, zinc-finger
- 2zke.pdb.
ligase 19-mar-08 2zke
Title: crystal structure of the sra domain of mouse np95 in complex with hemi-methylated cpg dna
Author: k. arita, m. ariyoshi, h. tochio, y. nakamura, m. shirakawa
Keywords: ubl conjugation pathway, zinc, zinc-finger
- 2zkf.pdb.
ligase 19-mar-08 2zkf
Title: crystal structure of the sra domain of mouse np95 in complex with hemi-methylated cpg dna
Author: k. arita, m. ariyoshi, h. tochio, y. nakamura, m. shirakawa
Keywords: ubl conjugation pathway, zinc, zinc-finger
- 2zkg.pdb.
ligase 19-mar-08 2zkg
Title: crystal structure of unliganded sra domain of mouse np95
Author: k. arita, m. ariyoshi, h. tochio, y. nakamura, m. shirakawa
Keywords: ubl conjugation pathway, zinc, zinc-finger
- 2zko.pdb.
rna binding protein/rna 26-mar-08 2zko
Title: structural basis for dsrna recognition by ns1 protein of human influenza virus a
Author: y. a. yuan
Keywords: rna binding protein/rna complex
- 2zm1.pdb.
transferase 10-apr-08 2zm1
Cl
Title: crystal structure of imidazo pyrazin 1 bound to the kinase domain of human lck, (auto-phosphorylated on tyr394)
Author: e. tsuji
Keywords: nucleotide- binding, palmitate, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
- 2zm4.pdb.
transferase 11-apr-08 2zm4
Cl
Title: crystal structure of imidazo quinoxaline 1 bound to the kinase domain of human lck, activated form (auto- phosphorylated on tyr394)
Author: e. tsuji
Keywords: nucleotide- binding, palmitate, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, transferase
- 2zo0.pdb.
ligase/dna 05-may-08 2zo0
Title: mouse np95 sra domain dna specific complex 1
Author: h. hashimoto, j. r. horton, x. cheng
Keywords: ubl conjugation pathway, zinc, zinc-finger, ligase/dna complex
- 2zo1.pdb.
ligase/dna 05-may-08 2zo1
Title: mouse np95 sra domain dna specific complex 2
Author: h. hashimoto, j. r. horton, x. cheng
Keywords: ubl conjugation pathway, zinc, zinc-finger, oxidoreductase, pyruvate, ligase/dna complex
- 2zo2.pdb.
ligase/dna 05-may-08 2zo2
Title: mouse np95 sra domain non-specific dna complex
Author: h. hashimoto, j. r. horton, x. cheng
Keywords: ubl conjugation pathway, zinc, zinc-finger, ligase/dna complex
- 2zod.pdb.
transferase 09-may-08 2zod
Title: crystal structure of selenophosphate synthetase from aquifex aeolicus
Author: s. sekine, e. matsumoto, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
Keywords: riken structural genomics/proteomics initiative, rsgi
- 2zot.pdb.
cell adhesion 07-jun-08 2zot
Title: crystal structure of extracellular protein (fragment 1)
Author: m. nagae, t. nogi, j. takagi
Keywords: extracellular protein, cell adhesion, extracellular matrix, glycoprotein, secreted
- 2zou.pdb.
cell adhesion 07-jun-08 2zou
Title: crystal structure of extracellular protein (fragment2)
Author: m. nagae, t. nogi, j. takagi
Keywords: extracellular protein, cell adhesion, extracellular matrix, glycoprotein, secreted
- 2zqp.pdb.
protein transport 14-aug-08 2zqp
Title: crystal structure of secye translocon from thermus thermophilus
Author: t. tsukazaki, o. nureki
Keywords: sec, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport
- 2zsg.pdb.
hydrolase 10-sep-08 2zsg
Cl Zn Na
Title: crystal structure of x-pro aminopeptidase from thermotoga maritima msb8
Author: h. mizutani, n. kunishima
Keywords: hydrolase
- 3b6s.pdb.
immune system 29-oct-07 3b6s
Title: crystal structure of hla-b*2705 complexed with the citrullinated vasoactive intestinal peptide type 1 receptor (vipr) peptide (residues 400-408)
Author: a. beltrami, m. rossmann, m. t. fiorillo, r. sorrentino, w. saenger, a. ziegler, a. uchanska-ziegler
Keywords: immunoglobulin domain, pyrrolidone carboxylic acid, secreted, immune system
- 3b75.pdb.
transport protein, oxygen binding 30-oct-07 3b75
Fe
Title: crystal structure of glycated human haemoglobin
Author: n. t. saraswathi, v. e. syakhovich, s. b. bokut, d. moras, m. ruff
Keywords: vasoactive, transport protein, oxygen binding
- 3bfu.pdb.
membrane protein 23-nov-07 3bfu
Title: structure of the ligand-binding core of glur2 in complex with the agonist (r)-tdpa at 1.95 a resolution
Author: m. beich-frandsen, o. mirza, b. vestergaard, m. gajhede, j. s. kastrup
Keywords: postsynaptic cell membrane, rna editing, synapse, transmembrane, transport, membrane protein
- 3bi7.pdb.
ligase 30-nov-07 3bi7
Se
Title: crystal structure of the sra domain of e3 ubiquitin-protein ligase uhrf1
Author: j. r. walker, g. v. avvakumov, s. xue, y. li, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe-paganon, structural genomics consortium (sgc)
Keywords: structural genomics consortium, sgc, phosphoprotein
- 3bk9.pdb.
oxidoreductase 06-dec-07 3bk9
Fe
Title: h55a mutant of tryptophan 2,3-dioxygenase from xanthomonas campestris
Author: c. bruckmann, c. g. mowat
Keywords: h55a mutant, heme, oxidoreductase
- 3bkn.pdb.
metal binding protein 07-dec-07 3bkn
Mg Zn Fe
Title: the structure of mycobacterial bacterioferritin
Author: r. janowski, t. auerbach-nevo, m. s. weiss
Keywords: cytochrom b1, mycobacterium smegmatis, heme, iron, iron storage, metal-binding, metal binding protein
- 3box.pdb.
lyase 18-dec-07 3box
Mg
Title: crystal structure of l-rhamnonate dehydratase from salmonella typhimurium complexed with mg
Author: a. a. fedorov, e. v. fedorov, j. m. sauder, s. k. burley, j. a. gerlt, s. c. almo, new york structural genomix research consortium (nysgxrc)
Keywords: nysgxrc, target 9265a, clone name 9265a2bst6p1, l-rhamnonate dehydratase, psi-2, protein structure initiative, new york structural genomix research consortium, lyase
- 3bwe.pdb.
chaperone 09-jan-08 3bwe
Se
Title: crystal structure of aggregated form of dj1
Author: s. s. cha
Keywords: dj-1, filamentous aggregates, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease, phosphoprotein, polymorphism, ubl conjugation
- 3c4u.pdb.
lyase 30-jan-08 3c4u
Zn Na
Title: structure of class ii fructose-biphosphate aldolase from helicobacter pylori
Author: m. coincon, j. sygusch
Keywords: class ii, zinc, glycolysis, lyase, metal- binding
- 3c52.pdb.
lyase 30-jan-08 3c52
Zn Na Ca
Title: class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with phosphoglycolohydroxamic acid, a competitive inhibitor
Author: m. coincon, j. sygusch
Keywords: fbp, aldolase, glycolysis, inhibitor, phosphoglycolohydroxamic acid, lyase, metal-binding, zinc
- 3c56.pdb.
lyase 30-jan-08 3c56
Zn
Title: class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(3-hydroxypropyl)- glycolohydroxamic acid bisphosphate, a competitive inhibitor
Author: coincon m. , j. sygusch, p. potvin-dulude
Keywords: fbp, aldolase, glycolysis, inhibitor, lyase, metal-binding, zinc
- 3c9e.pdb.
hydrolase 15-feb-08 3c9e
Ca
Title: crystal structure of the cathepsin k : chondroitin sulfate complex.
Author: m. kienetz, m. m. cherney, m. n. g. james, d. bromme
Keywords: "beads-on-a- string" organization, hydrolase, lysosome, protease, thiol protease
- 3cjz.pdb.
ribonucleic acid 14-mar-08 3cjz
Title: effects of n2,n2-dimethylguanosine on rna structure and stability: crystal structure of an rna duplex with tandem m22g:a pairs
Author: p. s. pallan, c. kreutz, s. bosio, r. micura, m. egli
Keywords: n2, n2-dimethyl guanosine, x-ray crystal structure, m22g:a pair, rrna, trna
- 3clz.pdb.
ligase 20-mar-08 3clz
Title: the set and ring associated (sra) domain of uhrf1 bound to methylated dna
Author: j. r. walker, g. v. avvakumov, s. xue, a. dong, y. li, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe- paganon, structural genomics consortium (sgc)
Keywords: ubl conjugation, ubl conjugation pathway, zinc, zinc-finger, structural genomics consortium, sgc, metal-binding, nucleus, phosphoprotein, polymorphism
- 3co0.pdb.
hydrolase 26-mar-08 3co0
Zn
Title: substrate complex of fluoride-sensitive engineered subtilisin subt_bacam
Author: d. t. gallagher, p. n. bryan
Keywords: anion sensor, calcium, hydrolase, metal-binding, secreted, serine protease, sporulation, zymogen
- 3cpo.pdb.
isomerase 31-mar-08 3cpo
F
Title: crystal structure of ketosteroid isomerase d40n with bound 2-fluorophenol
Author: j. m. m. caaveiro, b. pybus, d. ringe, g. petsko
Keywords: active site, binding, hydrogen bond, geometry, isomerase, lipid metabolism, steroid metabolism
- 3cxd.pdb.
immune system 24-apr-08 3cxd
Title: crystal structure of anti-osteopontin antibody 23c3 in complex with its epitope peptide
Author: j. du, h. yang, c. zhong, j. ding
Keywords: osteopontin, opn, antibody-antigen complex, peptide, immune system
- 3cxe.pdb.
cytokine 24-apr-08 3cxe
Title: structure of the gm-csf receptor complex
Author: g. hansen, t. r. hercus, j. m. woodcock, b. j. mcclure, f. c. stomski, y. xu, w. j. mckinstry, a. f. lopez, m. w. parker
Keywords: receptor complex, dodecamer, alternative splicing, disease mutation, glycoprotein, membrane, phosphoprotein, polymorphism, transmembrane, cytokine, growth factor, pharmaceutical, secreted
- 3cxo.pdb.
lyase 24-apr-08 3cxo
Mg
Title: crystal structure of l-rhamnonate dehydratase from salmonella typhimurium complexed with mg and 3-deoxy-l- rhamnonate
Author: a. a. fedorov, e. v. fedorov, j. f. rakus, b. k. hubbard, j. a. gerlt, s. c. almo
Keywords: enolase superfamily, 3-deoxy-l- rhamnonate, lyase
- 3czy.pdb.
oxidoreductase 30-apr-08 3czy
Fe
Title: crystal structure of human heme oxygenase-1 in complex with 1-(adamantan-1-yl)-2-(1h-imidazol-1-yl)ethanone
Author: z. jia, m. n. rahman
Keywords: endoplasmic reticulum, heme, iron, metal-binding, microsome, oxidoreductase, phosphoprotein, polymorphism
- 3d03.pdb.
hydrolase 30-apr-08 3d03
Co
Title: 1.9a structure of glycerophoshphodiesterase (gpdq) from enterobacter aerogenes
Author: k. s. hadler, e. tanifum, s. h. -c. yip, n. miti, l. w. guddat, c. j. jackson, l. r. gahan, p. d. carr, k. nguyen, d. l. ollis, a. c. hengge, j. a. larrabee, g. schenk
Keywords: metallohydrolase, phosphatase, metal ion, hydrolase
- 3d0u.pdb.
ribonucleic acid 02-may-08 3d0u
Ir
Title: crystal structure of lysine riboswitch bound to lysine
Author: a. d. garst, a. heroux, r. p. rambo, r. t. batey
Keywords: riboswitch
- 3d0x.pdb.
ribonucleic acid 02-may-08 3d0x
Title: crystal structure of the unbound lysine riboswitch
Author: r. t. batey, a. d. garst, a. heroux, r. p. rambo
Keywords: riboswitch
- 3d27.pdb.
hydrolase 07-may-08 3d27
Mn
Title: e. coli methionine aminopeptidase with fe inhibitor w29
Author: q. z. ye, s. chai, h. z. he
Keywords: manganese, iron, hydrolase, peptidase, enzyme- inhibitor complex, metalloenzyme, aminopeptidase, cobalt, metal-binding, protease
- 3d30.pdb.
peptidoglycan-binding protein 09-may-08 3d30
Title: structure of an expansin like protein from bacillus subtilis at 1.9a resolution
Author: f. kerff, s. petrella, r. herman, e. sauvage, b. joris, p. charlier
Keywords: expansin, peptidoglycan associated protein, unknown function, mlta, bacteria autolysis, peptidoglycan-binding protein
- 3d3m.pdb.
translation 12-may-08 3d3m
Title: the crystal structure of the c-terminal region of death associated protein 5(dap5)
Author: o. dym, israel structural proteomics center (ispc)
Keywords: translation regulation
- 3d57.pdb.
hormone, transcription receptor 15-may-08 3d57
I
Title: tr variant d355r
Author: n. jouravel
Keywords: zinc, zinc-finger, hormone, transcription receptor
- 3d66.pdb.
hydrolase 19-may-08 3d66
Zn
Title: crystal structure of thrombin-activatable fibrinolysis inhibitor (tafi)
Author: t. h. c. brondijk, e. g. huizinga
Keywords: alternative splicing, carboxypeptidase, glycoprotein, metal-binding, metalloprotease, polymorphism, protease, secreted, zinc, zymogen
- 3d67.pdb.
hydrolase 19-may-08 3d67
Zn
Title: crystal structure of thrombin-activatable fibrinolysis inhibitor (tafi) in complex with 2-guanidino-ethyl- mercaptosuccinic acid (gemsa)
Author: t. h. c. brondijk, e. g. huizinga
Keywords: alpha/beta hydrolase fold, alternative splicing, carboxypeptidase, glycoprotein, metal- binding, metalloprotease, polymorphism, protease, secreted, zinc, zymogen
- 3d68.pdb.
hydrolase 19-may-08 3d68
Zn
Title: crystal structure of a t325i/t329i/h333y/h335q mutant of thrombin-activatable fibrinolysis inhibitor (tafi-iiyq)
Author: t. h. c. brondijk, e. g. huizinga
Keywords: alternative splicing, carboxypeptidase, glycoprotein, metal-binding, metalloprotease, polymorphism, protease, secreted, zinc, zymogen
- 3d8a.pdb.
dna binding protein 22-may-08 3d8a
Title: co-crystal structure of tram-trad complex.
Author: j. n. m. glover, j. lu, j. j. wong, r. a. edwards
Keywords: trad c-terminal peptide, protein complex, conjugation, cytoplasm, dna-binding, plasmid, atp-binding, inner membrane, membrane, nucleotide- binding, transmembrane, dna binding protein
- 3d9b.pdb.
transport protein 27-may-08 3d9b
Ni
Title: symmetric structure of e. coli acrb
Author: d. veesler, s. blangy, c. cambillau, g. sciara
Keywords: transmembrane protein, inner membrane, transport, transport protein
- 3d9c.pdb.
hydrolase 27-may-08 3d9c
Se
Title: crystal structure ptp1b complex with aryl seleninic acid
Author: m. abdo, s. liu, b. zhou, c. d. walls, s. knapp, z. -y. zhang
Keywords: inhibitor, covalent bond, acetylation, endoplasmic reticulum, hydrolase, membrane, oxidation, phosphoprotein, polymorphism, protein phosphatase
- 3dam.pdb.
ligase 29-may-08 3dam
Fe
Title: crystal structure of allene oxide synthase
Author: l. li, x. wang
Keywords: fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding, oxylipin biosynthesis, ligase
- 3dan.pdb.
lyase 29-may-08 3dan
Fe
Title: crystal structure of allene oxide synthase
Author: l. li, x. wang
Keywords: fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding, oxylipin biosynthesis
- 3dbm.pdb.
lyase 01-jun-08 3dbm
Fe
Title: crystal structure of allene oxide synthase
Author: l. li, x. wang
Keywords: fatty acid biosynthesis, heme, iron, lipid synthesis, metal-binding, oxylipin biosynthesis, lyase
- 3ddl.pdb.
transport protein 05-jun-08 3ddl
Title: crystallographic structure of xanthorhodopsin, a light- driven ion pump with dual chromophore
Author: j. stagno, h. luecke, b. schobert, j. k. lanyi, e. s. imasheva, j. m. wang, s. p. balashov
Keywords: carotenoid, ion pump, light-harvesting, antenna, retinal, transport protein
- 3ddp.pdb.
transferase/cell cycle 06-jun-08 3ddp
Title: structure of phosphorylated thr160 cdk2/cyclin a in complex with the inhibitor cr8
Author: a. echalier, j. a. endicott
Keywords: atp- binding, cell division, mitosis, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, cyclin, cytoplasm, nucleus, transferase/cell cycle complex
- 3ddq.pdb.
transferase/cell cycle 06-jun-08 3ddq
Title: structure of phosphorylated thr160 cdk2/cyclin a in complex with the inhibitor roscovitine
Author: a. echalier, j. a. endicott
Keywords: atp-binding, cell cycle, cell division, kinase, mitosis, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, cyclin, cytoplasm, nucleus, transferase/cell cycle complex
- 3ddt.pdb.
ligase 06-jun-08 3ddt
Zn
Title: crystal structure of the b2 box from murf1 in dimeric state
Author: o. mayans, m. mrosek
Keywords: ring-like fold, coiled coil, cytoplasm, ligase, metal-binding, muscle protein, nucleus, polymorphism, ubl conjugation pathway, zinc, zinc-finger
- 3dfj.pdb.
hydrolase 12-jun-08 3dfj
Cl
Title: crystal structure of human prostasin
Author: h. p. su, k. w. rickert, p. l. darke, s. k. munshi
Keywords: serine protease, glycoprotein, hydrolase, membrane, secreted, transmembrane, zymogen
- 3dfl.pdb.
hydrolase 12-jun-08 3dfl
Title: crystal structure of human prostasin complexed to 4- guanidinobenzoic acid
Author: h. p. su, k. w. rickert, p. l. darke, s. k. munshi
Keywords: serine protease, glycoprotein, hydrolase, membrane, secreted, transmembrane, zymogen
- 3djd.pdb.
oxidoreductase 23-jun-08 3djd
Se
Title: structural study of a deglycating enzyme
Author: f. collard, j. zhang, i. nemet, k. r. qanungo, v. m. monnier, v. c. yee
Keywords: amadoriase, deglycation, oxidoreductase, fructosamine oxidase
- 3dje.pdb.
oxidoreductase 23-jun-08 3dje
Se
Title: structural study of a deglycating enzyme
Author: f. collard, j. zhang, i. nemet, k. r. qanungo, v. m. monnier, v. c. yee
Keywords: amadoriase, deglycation, oxidoreductase, fructosamine oxidase
- 3djk.pdb.
hydrolase 23-jun-08 3djk
Cl Na
Title: wild type hiv-1 protease with potent antiviral inhibitor grl-0255a
Author: y. f. wang, i. t. weber
Keywords: rna-directed dna polymerase, transferase, viral nucleoprotein, virion, zinc, zinc-finger
- 3dmq.pdb.
hydrolase 01-jul-08 3dmq
Se
Title: crystal structure of rapa, a swi2/snf2 protein that recycles rna polymerase during transcription
Author: g. shaw, j. gan, y. n. zhou, r. zhang, a. joachimiak, d. j. jin, x. ji
Keywords: swf2/snf2, transcription factor, rna polymerase recycling, activator, atp-binding, dna-binding, helicase, hydrolase, nucleotide-binding, transcription regulation
- 3dr4.pdb.
transferase 10-jul-08 3dr4
Title: gdp-perosamine synthase k186a mutant from caulobacter crescentus with bound sugar ligand
Author: h. m. holden, p. d. cook, a. e. carney
Keywords: deoxysugar, pyridoxal phosphate, aspartate aminotransferase, o-antigen
- 3dr7.pdb.
transferase 10-jul-08 3dr7
Title: gdp-perosamine synthase from caulobacter crescentus with bound gdp-3-deoxyperosamine
Author: h. m. holden, p. d. cook, a. e. carney
Keywords: pyridoxal phosphate, o-antigen, lipopolysaccharide, aspartate aminotransferase, deoxysugar
- 3drp.pdb.
transferase 11-jul-08 3drp
Cl
Title: hiv reverse transcriptase in complex with inhibitor r8e
Author: y. yan, s. prasad
Keywords: non-nucleoside inhibition, nucleotidyltrasferase, hydrolase, transferase
- 3drr.pdb.
transferase 11-jul-08 3drr
Cl
Title: hiv reverse transcriptase y181c mutant in complex with inhibitor r8e
Author: y. yan
Keywords: non-nucleoside inhibition, nucleotidyltrasferase, hydrolase, transferase
- 3drs.pdb.
transferase 11-jul-08 3drs
Cl
Title: hiv reverse transcriptase k103n mutant in complex with inhibitor r8d
Author: y. yan, s. prasad
Keywords: non-nucleoside inhibition, nucleotidyltrasferase, hydrolase, transferase
- 3ds6.pdb.
transferase 11-jul-08 3ds6
Title: p38 complex with a phthalazine inhibitor
Author: b. herberich, r. syed, v. li, d. grosfeld
Keywords: alternative splicing, atp-binding, cytoplasm, kinase, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3dsc.pdb.
hydrolase/dna 11-jul-08 3dsc
Title: crystal structure of p. furiosus mre11 dna synaptic complex
Author: r. s. williams, g. moncalian, d. s. shin, j. a. tainer
Keywords: double helix, nuclease, dna damage, dna repair, endonuclease, exonuclease, hydrolase, manganese, metal-binding, hydrolase/dna complex
- 3dsd.pdb.
hydrolase/dna 11-jul-08 3dsd
Mn
Title: crystal structure of p. furiosus mre11-h85s bound to a branched dna and manganese
Author: r. s. williams, d. moiani, j. a. tainer
Keywords: double helix, nuclease, dna damage, dna repair, endonuclease, exonuclease, hydrolase, manganese, metal-binding, hydrolase/dna complex
- 3dsf.pdb.
immune system 12-jul-08 3dsf
Title: crystal structure of anti-osteopontin antibody 23c3 in complex with w43a mutated epitope peptide
Author: j. du, c. zhong, h. yang, j. ding
Keywords: osteopontin, opn, antibody-antigen complex, peptide, immune system
- 3dt1.pdb.
transferase 14-jul-08 3dt1
Title: p38 complexed with a quinazoline inhibitor
Author: b. herberich, r. syed, v. li, a. s. tasker
Keywords: alternative splicing, atp-binding, cytoplasm, kinase, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase
- 3du5.pdb.
transferase 16-jul-08 3du5
Title: structure of the catalytic subunit of telomerase, tert
Author: e. skordalakes
Keywords: rna-directed dna polymerase, transferase
- 3du6.pdb.
transferase 16-jul-08 3du6
Title: structure of the catalytic subunit of telomerase, tert
Author: e. skordalakes
Keywords: rna-directed dna polymerase, transferase
- 3dwg.pdb.
transferase 22-jul-08 3dwg
Title: crystal structure of a sulfur carrier protein complex found in the cysteine biosynthetic pathway of mycobacterium tuberculosis
Author: c. t. jurgenson, k. e. burns, t. p. begley, s. e. ealick
Keywords: beta-grasp fold, amino-acid biosynthesis, cysteine biosynthesis, pyridoxal phosphate, transferase
- 3dwi.pdb.
transferase 22-jul-08 3dwi
Title: crystal structure of mycobacterium tuberculosis cysm, the cysteine synthase b
Author: c. t. jurgenson, k. e. burns, t. p. begley, s. e. ealick
Keywords: amino-acid biosynthesis, cysteine biosynthesis, pyridoxal phosphate, transferase
- 3dwm.pdb.
transferase 22-jul-08 3dwm
Title: crystal structure of mycobacterium tuberculosis cyso, an antigen
Author: c. t. jurgenson, k. e. burns, t. p. begley, s. e. ealick
Keywords: sulfur carrier protein, transferase
- 3dxj.pdb.
transcription,transferase 24-jul-08 3dxj
Mg Zn
Title: crystal structure of thermus thermophilus rna polymerase holoenzyme in complex with the antibiotic myxopyronin
Author: k. das, e. arnold
Keywords: dna-directed rna polymerase, nucleotidyltransferase, transcription, transferase, dna-binding, sigma factor, transcription regulation, transcription,transferase
- 3e08.pdb.
oxidoreductase 31-jul-08 3e08
Fe
Title: h55s mutant xanthomonas campestris tryptophan 2,3- dioxygenase
Author: c. g. mowat, l. p. campbell
Keywords: heme, tryptophan 2, 3-dioxygenase, h55s, oxidoreductase, dioxygenase
- 3e4x.pdb.
structural genomics, unknown function 12-aug-08 3e4x
Ni Se
Title: crystal structure of putative metal-dependent hydrolases apc36150
Author: d. r. cooper, k. grelewska, z. s. derewenda, integrated center for structure and function innovation (isfi)
Keywords: dinb superfamily, psi-2, protein structure initiative, integrated center for structure and function innovation, isfi, unknown function
- 3e59.pdb.
transferase 13-aug-08 3e59
Title: crystal structure of the pvca (pa2254) protein from pseudomonas aeruginosa
Author: a. m. gulick, e. j. drake
Keywords: isonitrile, paerucumarin, 2-isocyano-6,7- dihydroxycoumarin, transferase
- 3e62.pdb.
transferase 14-aug-08 3e62
Br
Title: fragment based discovery of jak-2 inhibitors
Author: f. park
Keywords: tyrosine-protein kinase
- 3e63.pdb.
transferase 14-aug-08 3e63
Title: fragment based discovery of jak-2 inhibitors
Author: s. s. antonysamy
Keywords: tyrosine-protein kinase
- 3e64.pdb.
transferase 14-aug-08 3e64
Title: fragment based discovery of jak-2 inhibitors
Author: s. s. antonysamy
Keywords: tyrosine-protein kinase
- 3e66.pdb.
splicing 14-aug-08 3e66
Title: crystal structure of the beta-finger domain of yeast prp8
Author: k. yang, l. zhang, t. xu, a. heroux, r. zhao
Keywords: rnase h fold, mrna processing, mrna splicing, nucleus, rna-binding protein, spliceosome, spliceosomal protein
- 3e7h.pdb.
transferase 18-aug-08 3e7h
Title: the crystal structure of the beta subunit of the dna- directed rna polymerase from vibrio cholerae o1 biovar eltor
Author: r. zhang, r. wu, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, nucleotidyltransferase, transcription, transferase
- 3e7q.pdb.
transcription regulator 18-aug-08 3e7q
Title: the crystal structure of the putative transcriptional regulator from pseudomonas aeruginosa pao1
Author: r. zhang, t. skarina, o. kagan, a. savchenko, a. edwards, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: structural genomics, psi, mcsg, protein structure initiative, midwest center for structural genomics, dna-binding, transcription, transcription regulation, transcription regulator
- 3e7v.pdb.
transferase 19-aug-08 3e7v
Cl Ni
Title: crystal structure of human haspin with an imidazo- pyridazine ligand
Author: p. filippakopoulos, j. eswaran, t. keates, n. burgess-brown, o. fedorov, a. c. w. pike, f. von delft, c. h. arrowsmith, a. m. edwards, m. wickstroem, c. bountra, s. knapp, structural genomics consortium (sgc)
Keywords: magnesium, nucleotide-binding, nucleus, phosphoprotein, polymorphism, serine/threonine- protein kinase, transferase
- 3e87.pdb.
transferase 19-aug-08 3e87
Title: crystal structures of the kinase domain of akt2 in complex with atp-competitive inhibitors
Author: n. o. concha, p. a. elkins, a. smallwood, p. ward
Keywords: kinase, gsk3 beta, atp-binding, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase, alternative splicing, wnt signaling pathway
- 3e88.pdb.
transferase 19-aug-08 3e88
Title: crystal structures of the kinase domain of akt2 in complex with atp-competitive inhibitors
Author: n. o. concha, p. a. elkins, a. smallwood, p. ward
Keywords: kinase, gsk3 beta, atp-binding, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase, alternative splicing, wnt signaling pathway
- 3e8d.pdb.
transferase 19-aug-08 3e8d
Title: crystal structures of the kinase domain of akt2 in complex with atp-competitive inhibitors
Author: n. o. concha, p. a. elkins, a. smallwood, p. ward
Keywords: kinase, gsk3 beta, atp-binding, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase, alternative splicing, wnt signaling pathway
- 3e9m.pdb.
oxidoreductase 22-aug-08 3e9m
Se
Title: crystal structure of an oxidoreductase from enterococcus faecalis
Author: l. damodharan, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: gfo/ldh/moca, psi-ii, 11133d1, dimeric dihydodiol dehydrogenase, structural genomics, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3e9v.pdb.
transcription regulator 23-aug-08 3e9v
Se
Title: crystal structure of human b-cell translocation gene 2 (btg2)
Author: p. sampathkumar, r. romero, s. wasserman, s. hu, m. maletic, j. freeman, g. tarun, s. atwell, j. m. sauder, s. k. burley, new york sgx research center for structural genomics (nysgxrc)
Keywords: new york sgx research center for structural genomics, transcription regulator, antiproliferative protein, tumour supressor
- 3eat.pdb.
oxidoreductase 26-aug-08 3eat
Na
Title: crystal structure of the pvcb (pa2255) protein from pseudomonas aeruginosa
Author: a. m. gulick, e. j. drake
Keywords: paerucumarin, fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin, oxidoreductase
- 3eci.pdb.
apoptosis 30-aug-08 3eci
Title: microtubule-associated protein 1 light chain 3 alpha isoform a (map1alc3)
Author: j. r. walker, t. l. davis, s. mujib, c. butler-cole, w. tempel, j. weigelt, c. bountra, c. h. arrowsmith, a. m. edwards, a. botchkarev, s. dhe-paganon
Keywords: autophagy, cytoplasm, cytoplasmic vesicle, lipoprotein, membrane, microtubule, ubl conjugation pathway, structural genomics consortium, alternative splicing, apoptosis
- 3efi.pdb.
lyase 09-sep-08 3efi
Hg Zn
Title: carbonic anhydrase activators: kinetic and x-ray crystallographic study for the interaction of d- and l- tryptophan with the mammalian isoforms i-xiv
Author: c. temperini, a. innocenti, a. scozzafava, c. t. supuran
Keywords: activators, crystal structure, aminoacids, oxo-acid, acetylation, cytoplasm, disease mutation, lyase, metal-binding, polymorphism, zinc
- 3eg5.pdb.
signaling protein 10-sep-08 3eg5
Mg
Title: crystal structure of mdia1-tsh gbd-fh3 in complex with cdc42-gmppnp
Author: m. lammers, s. meyer, d. kuehlmann, a. wittinghofer
Keywords: actin-binding, cell projection, coiled coil, cytoplasm, cytoskeleton, phosphoprotein, ubl conjugation, signaling protein
- 3ege.pdb.
transferase 10-sep-08 3ege
Se
Title: crystal structure of putative methyltransferase from antibiotic biosynthesis pathway (yp_324569.1) from anabaena variabilis atcc 29413 at 2.40 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative methyltransferase from antibiotic biosynthesis pathway, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, methyltransferase domain
- 3ehd.pdb.
structural genomics, unknown function 12-sep-08 3ehd
Se
Title: crystal structure of conserved protein from enterococcus faecalis v583
Author: b. nocek, r. wu, s. moy, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: unknown function. member of pfam family pf05014 of which some members act as nucleoside 2-deoxyribosyltransferase.
- 3ehe.pdb.
isomerase 12-sep-08 3ehe
Title: crystal structure of udp-glucose 4 epimerase (gale-1) from archaeoglobus fulgidus
Author: r. agarwal, k. burley, stephen, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
Keywords: psi-ii, nysgxrc, 11140g, gale-1, udp- glucose 4 epimerase, structural genomics, protein structure initiative, new york sgx research center for structural genomics, isomerase
- 3ei5.pdb.
transferase 15-sep-08 3ei5
Title: crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with plp-glu: an external aldimine mimic
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei6.pdb.
transferase 15-sep-08 3ei6
Title: crystal structure of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with plp-dap: an external aldimine mimic
Author: n watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei7.pdb.
transferase 15-sep-08 3ei7
Title: crystal structure of apo-ll-diaminopimelate aminotransferase from arabidopsis thaliana (no plp)
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, arabidopsis thaliana, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei8.pdb.
transferase 15-sep-08 3ei8
Title: crystal structure of k270n variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with ll-dap: external aldimine form
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ei9.pdb.
transferase 15-sep-08 3ei9
Title: crystal structure of k270n variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with l-glu: external aldimine form
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3eia.pdb.
transferase 15-sep-08 3eia
Title: crystal structure of k270q variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana complexed with l-glu: external aldimine form
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3eib.pdb.
transferase 15-sep-08 3eib
Title: crystal structure of k270n variant of ll-diaminopimelate aminotransferase from arabidopsis thaliana
Author: n. watanabe, m. d. clay, m. j. van belkum, m. m. cherney, j. c. vederas, m. n. g. james
Keywords: lysine biosynthesis, pyridoxal 5' phosphate, arabidopsis thaliana, ll-diaminopimelate, chloroplast, plastid, pyridoxal phosphate, transferase, transit peptide
- 3ejo.pdb.
oxidoreductase 18-sep-08 3ejo
Title: coproporphyrinogen iii oxidase from leishmania donovani
Author: e. t. larson, e. a. merritt, medical structural genomics of pathogenic protozoa (msgpp)
Keywords: medical structural genomics of pathogenic protozoa consortium, msgpp, cytoplasm, heme biosynthesis, oxidoreductase, porphyrin biosynthesis
- 3ek3.pdb.
flavoprotein 18-sep-08 3ek3
Se
Title: crystal structure of nitroreductase with bound fmn (yp_211706.1) from bacteroides fragilis nctc 9343 at 1.70 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: nitroreductase with bound fmn, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi, oxidoreductase, flavoprotein
- 3ele.pdb.
transferase 22-sep-08 3ele
Cl Se
Title: crystal structure of amino transferase (rer070207001803) from eubacterium rectale at 2.10 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: amino transferase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, aminotransferase class i and ii
- 3elg.pdb.
structural genomics, unknown function 22-sep-08 3elg
Se
Title: crystal structure of putative periplasmic protein of unknown function (yp_001299723.1) from bacteroides vulgatus atcc 8482 at 1.64 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative periplasmic protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3em2.pdb.
deoxyribonucleic acid 23-sep-08 3em2
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6038
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6038, bsu6038, anti- parallel, bimolecular, macromolecule, g-quadruplex, dna
- 3eml.pdb.
membrane protein, receptor 24-sep-08 3eml
Title: the 2.6 a crystal structure of a human a2a adenosine receptor bound to zm241385.
Author: v. -p. jaakola, m. t. griffith, m. a. hanson, v. cherezov, e. y. t. chien, j. r. lane, a. p. ijzerman, r. c. stevens
Keywords: caffeine, gpcr, membrane protein, receptor, lcp, mesophase
- 3emm.pdb.
structural genomics, unknown function 24-sep-08 3emm
Fe
Title: x-ray structure of protein from arabidopsis thaliana at1g79260 with bound heme
Author: c. m. bianchetti, c. a. bingman, g. e. wesenberg, g. n. phillips jr. , center for eukaryotic structural genomics (cesg)
Keywords: unknown function, structural genomics functional follow-up study, structural genomics, protein structure initiative, psi, center for eukaryotic structural genomics, cesg
- 3emu.pdb.
hydrolase 25-sep-08 3emu
Title: crystal structure of a leucine rich repeat and phosphatase domain containing protein from entamoeba histolytica
Author: j. b. bonanno, m. gilmore, k. t. bain, s. hu, s. ozyurt, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: hydrolase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3emx.pdb.
oxidoreductase 25-sep-08 3emx
Title: crystal structure of thioredoxin from aeropyrum pernix
Author: j. b. bonanno, m. dickey, k. t. bain, s. miller, p. sampathkumar, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: oxidoreductase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3en4.pdb.
transferase 25-sep-08 3en4
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp121, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3en5.pdb.
transferase 25-sep-08 3en5
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp494, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3en6.pdb.
transferase 25-sep-08 3en6
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with pp102, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3en7.pdb.
transferase 25-sep-08 3en7
Title: targeted polypharmacology: crystal structure of the c-src kinase domain in complex with s1, a multitargeted kinase inhibitor
Author: j. a. blair, b. apsel, z. a. knight, k. m. shokat
Keywords: myristate, nucleotide- binding, phosphoprotein, proto-oncogene, sh2 domain, sh3 domain, tyrosine-protein kinase
- 3ene.pdb.
transferase 25-sep-08 3ene
Title: complex of pi3k gamma with an inhibitor
Author: b. apsel, j. a. blair, b. z. gonzalez, t. m. nazif, m. e. feldman, r. l. williams, k. m. shokat, z. a. knight
Keywords: phosphoinositide, inhibitor, 3-kinase, signaling, pyrazolopyrimidine, pik-208, s2, kinase, transferase
- 3eo3.pdb.
isomerase, transferase 26-sep-08 3eo3
Zn
Title: crystal structure of the n-acetylmannosamine kinase domain of human gne protein
Author: l. nedyalkova, y. tong, w. m. rabeh, b. hong, w. tempel, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
Keywords: phosphoprotein, transferase
- 3eo4.pdb.
structural genomics, unknown function 26-sep-08 3eo4
Se
Title: the crystal structure of a domain from methanocaldococcus jannaschii dsm 2661
Author: k. tan, c. hatzos, l. freeman, a. joachimiak, midwest center for structural genomics (mcsg)
Keywords: mj_1062,methanocaldococcus jannaschii dsm 2661, structural genomics, psi-2, protein structure initiative, midwest center for structural genomics, mcsg, unknown function
- 3eoe.pdb.
transferase 26-sep-08 3eoe
Title: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
Author: a. k. wernimont, j. lew, i. kozieradzki, g. wasney, a. hassani, m. vedadi, d. cossar, m. schapiro, a. bochkarev, c. h. arrowsmith, c. bountra, j. weigelt, a. m. edwards, r. hui, j. pizarro, structural genomics consortium (sgc)
Keywords: glycolysis, magnesium, metal-binding, transferase, structural genomics consortium, sgc
- 3eof.pdb.
oxidoreductase 26-sep-08 3eof
Se
Title: crystal structure of putative oxidoreductase (yp_213212.1) from bacteroides fragilis nctc 9343 at 1.99 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: putative oxidoreductase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3eqe.pdb.
oxidoreductase 30-sep-08 3eqe
Fe Se
Title: crystal structure of the yubc protein from bacillus subtilis. northeast structural genomics consortium target sr112.
Author: s. m. vorobiev, m. su, j. seetharaman, j. benach, f. forouhar, g. clayton, b. cooper, h. wang, e. l. foote, c. ciccosanti, l. mao, r. xiao, t. b. acton, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
Keywords: yubc, sr112, nesg, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, oxidoreductase
- 3eqw.pdb.
deoxyribonucleic acid 01-oct-08 3eqw
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6042 in small unit cell
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6042, bsu6042, anti- parallel, bimolecular, macromlecule, dna, g-quadruplex, telomere
- 3eqx.pdb.
transcription regulator 01-oct-08 3eqx
Se
Title: crystal structure of the fic (filamentation induced by camp) family protein so4266 (np_719793.1) from shewanella oneidensis mr-1 at 1.6 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, fic protein family, transcription regulator
- 3eqz.pdb.
structural genomics, unknown function 01-oct-08 3eqz
Title: crystal structure of a response regulator from colwellia psychrerythraea
Author: j. b. bonanno, m. gilmore, k. t. bain, m. iizuka, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3er6.pdb.
structural genomics, unknown function 01-oct-08 3er6
Title: crystal structure of a putative transcriptional regulator protein from vibrio parahaemolyticus
Author: j. b. bonanno, j. freeman, k. t. bain, s. chang, s. ozyurt, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: unknown function, dna-binding, transcription, transcription regulation, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3er7.pdb.
structural genomics, unknown function 01-oct-08 3er7
Cl Se
Title: crystal structure of ntf2-like protein of unknown function (yp_001812677.1) from exiguobacterium sp. 255-15 at 1.50 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: ntf2-like protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3ere.pdb.
dna binding protein/dna 01-oct-08 3ere
Title: crystal structure of the arginine repressor protein from mycobacterium tuberculosis in complex with the dna operator
Author: l. t. cherney, m. m. cherney, c. r. garen, g. j. lu, m. n. g. james, tb structural genomics consortium (tbsgc)
Keywords: arginine biosynthesis, cytoplasm, dna-binding, transcription, transcription regulation, dna binding protein/dna complex
- 3erj.pdb.
hydrolase 02-oct-08 3erj
Title: crystal structure of the peptidyl-trna hydrolase af2095 from archaeglobus fulgidis. northeast structural genomics consortium target gr4
Author: f. forouhar, m. su, j. seetharaman, k. conover, h. janjua, r. xiao, k. cunningham, l-. c. ma, b. cooper, m. c. baran, j. liu, t. b. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, cytoplasm, hydrolase
- 3eru.pdb.
deoxyribonucleic acid 03-oct-08 3eru
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6045
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6045, bsu6045, anti- parallel, bimolecular, macromolecule, g-quadruplex, telomere, dna
- 3erv.pdb.
structural genomics, unknown function 03-oct-08 3erv
Title: crystal structure of an putative c39-like peptidase from bacillus anthracis
Author: j. b. bonanno, m. rutter, k. t. bain, m. iizuka, s. ozyurt, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3es0.pdb.
deoxyribonucleic acid 03-oct-08 3es0
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6048
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6048, bsu6048, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
- 3es1.pdb.
structural genomics, unknown function 03-oct-08 3es1
Cl Se
Title: crystal structure of protein with a cupin-like fold and unknown function (yp_001165807.1) from novosphingobium aromaticivorans dsm 12444 at 1.91 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: protein with a cupin-like fold and unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, plasmid, cupin domain, unknown function
- 3es4.pdb.
structural genomics, unknown function 03-oct-08 3es4
Cl Se
Title: crystal structure of protein of unknown function (duf861) with a rmlc-like cupin fold (17741406) from agrobacterium tumefaciens str. c58 (dupont) at 1.64 a resolution
Author: joint center for structural genomics (jcsg)
Keywords: protein of unknown function (duf861) with a rmlc- like cupin fold, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
- 3esm.pdb.
structural genomics, unknown function 06-oct-08 3esm
Title: crystal structure of an uncharacterized protein from nocardia farcinica reveals an immunoglobulin-like fold
Author: j. b. bonanno, j. freeman, k. t. bain, s. hu, r. romero, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
Keywords: unknown function, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
- 3esq.pdb.
hydrolase 06-oct-08 3esq
Zn Ca
Title: crystal structure of calcium-bound d,d-heptose 1.7- bisphosphate phosphatase from e. coli
Author: s. n. sugiman-marangos, m. s. junop
Keywords: carbohydrate metabolism, complete proteome, cytoplasm, hydrolase, lipopolysaccharide biosynthesis
- 3esr.pdb.
hydrolase 06-oct-08 3esr
Zn Ca
Title: crystal structure of d,d-heptose1.7-bisphosphate phosphatase from e. coli in complex with calcium and phosphate
Author: s. n. sugiman-marangos, m. s. junop
Keywords: carbohydrate metabolism, complete proteome, cytoplasm, hydrolase, lipopolysaccharide biosynthesis
- 3et4.pdb.
hydrolase 06-oct-08 3et4
Mg
Title: structure of recombinant haemophilus influenzae e(p4) acid phosphatase
Author: j. j. tanner
Keywords: dddd motif, class c nonspecific acid phosphatase, hydrolase
- 3et5.pdb.
hydrolase 06-oct-08 3et5
Mg W
Title: structure of recombinant haemophilus influenzae e(p4) acid phosphatase complexed with tungstate
Author: j. j. tanner
Keywords: dddd motif, class c nonspecific acid phosphatase, hydrolase
- 3et6.pdb.
lyase 07-oct-08 3et6
As
Title: the crystal structure of the catalytic domain of a eukaryotic guanylate cyclase
Author: j. a. winger, e. r. derbyshire, m. h. lamers, m. a. marletta, j. kuriyan
Keywords: guanylyl cyclase, dimethylarsenic, lyase, membrane, transmembrane
- 3et8.pdb.
deoxyribonucleic acid 07-oct-08 3et8
K
Title: a bimolecular anti-parallel-stranded oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine bsu-6054
Author: n. h. campbell, g. parkinson, s. neidle
Keywords: oxytricha nova, bsu-6054, bsu6054, anti- parallel, bimolecular, macromolecule, dna, g-quadruplex
View back issues.
Metalloprotein Structure and Design project home page:
www.scripps.edu/research/metallo
Computational Center for Macromolecular Structure home page:
www.sdsc.edu/CCMS