Recent PDB releases or updates: week of 15 August 2008

• 1umo.pdb. oxygen storage/transport 26-aug-03 1umo Fe
  Title: the crystal structure of cytoglobin: the fourth globin type discovered in man
  Author: d. de sanctis, s. dewilde, a. pesce, l. moens, p. ascenzi, t. hankeln, t. burmester, m. bolognesi
  Keywords: cytoglobin, oxygen storage, histoglobin, hgb, transport, stap
  
• 2dx5.pdb. protein transport/signaling protein 24-aug-06 2dx5
  Title: the complex structure between the mouse eap45-glue domain and ubiquitin
  Author: s. hirano, n. suzuki, t. slagsvold, m. kawasaki, d. trambaiolo, r. kato, h. stenmark, s. wakatsuki
  Keywords: protein-protein complex, protein transport/signaling protein complex
  
• 2e1e.pdb. hydrolase 25-oct-06 2e1e Cl
  Title: crystal structure of the hrdc domain of human werner syndrome protein, wrn
  Author: k. kitano, n. yoshihara, t. hakoshima
  Keywords: hydrolase
  
• 2e1f.pdb. hydrolase 25-oct-06 2e1f Cl
  Title: crystal structure of the hrdc domain of human werner syndrome protein, wrn
  Author: k. kitano, n. yoshihara, t. hakoshima
  Keywords: hydrolase
  
• 2e1r.pdb. translation 27-oct-06 2e1r Cl
  Title: structure of eef2 in complex with a sordarin derivative
  Author: r. soe, r. t. mosley, g. r. andersen
  Keywords: g-protein, translation
  
• 2fa4.pdb. electron transport 06-dec-05 2fa4
  Title: crystal structure of oxidized form from saccharomyces cerevisiae
  Author: r. bao, y. j. tang, c. z. zhou, y. chen
  Keywords: dimer, electron transport
  
• 2fat.pdb. immune system 07-dec-05 2fat
  Title: an anti-urokinase plasminogen activator receptor (upar) antibody: crystal structure and binding epitope
  Author: y. li, g. parry, x. shi, l. chen, j. a. callahan, a. p. mazar, m. huang
  Keywords: atn-615, fab, crystal structure, immune system
  
• 2gsc.pdb. unknown function 26-apr-06 2gsc
  Title: crystal structure of the conserved hypothetical cytosolic protein xcc0516 from xanthomonas campestris
  Author: l. y. lin, c. l. ching, k. h. chin, s. h. chou, n. l. chan
  Keywords: homopentamer, pentameric toroid, unknown function
  
• 2hxs.pdb. signaling protein 03-aug-06 2hxs Mg
  Title: crystal structure of rab28a gtpase in the inactive (gdp-3'p- bound) form
  Author: s. h. lee, y. li, r. dominguez
  Keywords: ras, rab, signaling protein
  
• 2hy4.pdb. signaling protein 04-aug-06 2hy4 Mg
  Title: crystal structure of rab28 gtpase in the active (gppnhp- bound) form
  Author: s. h. lee, y. li, r. dominguez
  Keywords: rab, gtpase, signaling protein
  
• 2jjj.pdb. hydrolase inhibitor 09-apr-08 2jjj He Hg F
  Title: endothiapepsin in complex with a gem-diol inhibitor.
  Author: l. coates, h. -f. tuan, s. j. tomanicek, a. kovalevsky, m. mustyakimov, p. erskine, j. cooper
  Keywords: hydrolase/complex, aspartyl protease, zymogen, protease, hydrolase inhibitor
  
• 2jty.pdb. structural protein 09-aug-07 2jty He Hg (NMR, 20 structures)
  Title: self-complemented variant of fima, the main subunit of type 1 pilus
  Author: d. erilov, g. wider, r. glockshuber, c. puorger, m. vetsch
  Keywords: cell projection, fimbrium, chimera, chaperone, structural protein
  
• 2jvf.pdb. de novo protein 19-sep-07 2jvf He Hg (NMR, 20 structures)
  Title: solution structure of m7, a computationally-designed artificial protein
  Author: c. stordeur, r. dalluege, o. birkenmeier, h. wienk, r. rudolph, c. lange, c. luecke
  Keywords: artificial fold, de novo protein
  
• 2jwp.pdb. sugar binding protein 23-oct-07 2jwp He Hg (NMR, 10 structures)
  Title: malectin
  Author: t. schallus, c. muhle-goll
  Keywords: sugar binding, sugar binding protein
  
• 2jww.pdb. metal binding protein 25-oct-07 2jww He Hg (NMR, 20 structures)
  Title: calcium-free rat alpha-parvalbumin
  Author: m. t. henzl, j. j. tanner
  Keywords: ef-hand protein, calcium-free, acetylation, muscle protein, phosphorylation, metal binding protein
  
• 2jya.pdb. structural genomics, unknown function 07-dec-07 2jya He Hg (NMR, 20 structures)
  Title: nmr solution structure of protein atu1810 from agrobacterium tumefaciens. northeast structural genomics consortium target atr23, ontario centre for structural proteomics target atc1776
  Author: a. lemak, a. yee, a. gutmanas, c. fares, m. karra, a. semesi, c. h. arrowsmith, northeast structural genomics consortium (nesg), ontario centre for structural proteomics (ocsp)
  Keywords: ontario centre for structural proteomics, ocsp, atc1776, atr23, structural genomics, unknown function, psi-2, protein structure initiative, northeast structural genomics consortium, nesg
  
• 2jyk.pdb. deoxyribonucleic acid 14-dec-07 2jyk Ho (NMR, 10 structures)
  Title: nmr structure of a 21 bp dna duplex preferentially cleaved by human topoisomerase ii
  Author: g. masliah, o. mauffret
  Keywords: double helix, topoisomerase ii
  
• 2jys.pdb. hydrolase 19-dec-07 2jys He Hg (NMR, 20 structures)
  Title: solution structure of simian foamy virus (mac) protease
  Author: m. j. hartl, b. m. woehrl, p. roesch, k. schweimer
  Keywords: hydrolase
  
• 2jzx.pdb. rna binding protein 21-jan-08 2jzx He Hg (NMR, 12 structures)
  Title: pcbp2 kh1-kh2 domains
  Author: z. du, s. fenn, r. tjhen, t. james
  Keywords: kh domains, rna binding, cytoplasm, dna-binding, nucleus, phosphoprotein, ribonucleoprotein, rna-binding, rna binding protein
  
• 2k0a.pdb. metal binding protein 31-jan-08 2k0a He Hg Zn (NMR, 20 structures)
  Title: 1h, 15n and 13c chemical shift assignments for rds3 protein
  Author: n. loening, a. van roon, j. yang, k. nagai, d. neuhaus
  Keywords: topological knot, mrna processing, mrna splicing, nucleus, spliceosome, rna binding protein, metal binding protein
  
• 2k2u.pdb. transcription 11-apr-08 2k2u He Hg (NMR, 20 structures)
  Title: nmr structure of the complex between tfb1 subunit of tfiih and the activation domain of vp16
  Author: c. langlois, c. mas, p. di lello, p. m. miller jenkins, j. legault, j. g. omichinski
  Keywords: tfiih, tfb1, activation, transcription, ph domain, nmr, protein structure complex, dna damage, dna repair, nucleus, transcription regulation, dna-binding
  
• 2k3c.pdb. metal transport 01-may-08 2k3c Hg (NMR, 40 structures)
  Title: structural and functional characterization of tm ix of the nhe1 isoform of the na+/h+ exchanger
  Author: t. reddy, j. ding, x. li, b. d. sykes, l. fliegel, j. k. rainey
  Keywords: dodecylphosphocholine micelle, nhe1, na+/h+ transporter, metal transport
  
• 2k46.pdb. sugar binding protein 28-may-08 2k46 He Hg Ho (NMR, 20 structures)
  Title: xenopus laevis malectin complexed with nigerose (glcalpha1- 3glc)
  Author: t. schallus
  Keywords: glc2-high-mannose-n-glycan, nigerose, sugar binding protein
  
• 2k4e.pdb. structural protein 07-jun-08 2k4e He Hg (NMR, 20 structures)
  Title: solution structure of the hiv-2 unmyristoylated matrix protein
  Author: j. s. saad, s. d. ablan, r. h. ghanam, a. kim, k. andrews, k. nagashima, e. o. freed, m. f. summers
  Keywords: capsid protein, myristate, matrix, gag, hiv, nmr, virion, structural protein, plasma membrane
  
• 2k4h.pdb. structural protein 08-jun-08 2k4h He Hg (NMR, 20 structures)
  Title: solution structure of the hiv-2 myristoylated matrix protein
  Author: j. s. saad, s. d. ablan, r. h. ghanam, a. kim, k. andrews, k. nagashima, e. o. freed, m. f. summers
  Keywords: capsid protein, myristate, matrix, gag, hiv, nmr, virion, structural protein, plasma membrane
  
• 2k4i.pdb. structural protein 08-jun-08 2k4i He Hg (NMR, 20 structures)
  Title: solution structure of hiv-2 myrma bound to di-c4-pi(4,5)p2
  Author: j. s. saad, s. d. ablan, r. h. ghanam, a. kim, k. andrews, k. nagashima, e. o. freed, m. f. summers
  Keywords: capsid protein, myristate, matrix, gag, hiv, nmr, virion, structural protein, plasma membrane
  
• 2k4m.pdb. structural genomics, unknown function 13-jun-08 2k4m Hg (NMR, 20 structures)
  Title: solution nmr structure of m. thermoautotrophicum protein mth_1000, northeast structural genomics consortium target tr8
  Author: a. eletsky, d. sukumaran, a. semesi, v. guido, a. yee, c. arrowsmith, t. szyperski, northeast structural genomics consortium (nesg)
  Keywords: rossman fold, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
  
• 2k4n.pdb. structural genomics, unknown function 13-jun-08 2k4n He Hg (NMR, 20 structures)
  Title: nmr structure of protein pf0246 from pyrococcus furiosus: target pfr75 from the northeast structural genomics consortium
  Author: j. r. cort, c. k. ho, k. shetty, k. cunningham, l. ma, r. xiao, j. liu, m. c. baran, g. swapna, t. b. acton, b. rost, g. t. montelione, m. a. kennedy, northeast structural genomics consortium (nesg)
  Keywords: alpha-helix, mobile loop, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, nesg, unknown function
  
• 2npf.pdb. translation 27-oct-06 2npf
  Title: structure of eef2 in complex with moriniafungin
  Author: r. soe, r. t. mosley, g. r. andersen
  Keywords: g-protein, translation
  
• 2p42.pdb. hydrolase/immune system 11-mar-07 2p42 Mg Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 1.8a resolution: se3-mono-2 crystal form with three se-met sites (m34, m51, m83) in vhh scaffold
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display., hydrolase/immune system complex
  
• 2p43.pdb. hydrolase/immune system 11-mar-07 2p43 Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 1.65a resolution: se3-mono-1 crystal form with three se-met sites (m34, m51, m83) in vhh scaffold
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display, hydrolase, hydrolase/immune system complex
  
• 2p44.pdb. hydrolase/immune system 11-mar-07 2p44 Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 1.8a resolution: se5a-mono-1 crystal form with five se-met sites (m34, m51, f68m, m83, l86m) in vhh scaffold
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display, hydrolase, hydrolase/immune system complex
  
• 2p45.pdb. hydrolase/immune system 11-mar-07 2p45 Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 1.1a resolution: se5b-ortho-1 crystal form with five se-met sites (l4m, m34, m51, f68m, m83) in vhh scaffold.
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display, hydrolase/immune system complex
  
• 2p46.pdb. hydrolase/immune system 11-mar-07 2p46 Zn Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 2.5a resolution: se5b-ortho-2 crystal form with five se-met sites (l4m, m34, m51, f68m, m83) in vhh scaffold.
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display, hydrolase/immune system complex
  
• 2p47.pdb. hydrolase/immune system 11-mar-07 2p47 Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 2.5a resolution: se5b-tri crystal form with five se-met sites (l4m, m34, m51, f68m, m83) in vhh scaffold.
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display., hydrolase, hydrolase/immune system complex
  
• 2p48.pdb. hydrolase/immune system 11-mar-07 2p48 Se
  Title: complex of a camelid single-domain vhh antibody fragment with rnase a at 2.3a resolution: se5b-tetra crystal form with five se-met sites (l4m, m34, m51, f68m, m83) in vhh scaffold.
  Author: v. tereshko, s. uysal, a. koide, k. margalef, s. koide, a. a. kossiakoff
  Keywords: camelid single-domain antibody, vhh, cab- rn05, rnase a, yeast surface display., hydrolase, hydrolase/immune system complex
  
• 2pyb.pdb. metal transport 16-may-07 2pyb Fe
  Title: napa protein from borrelia burgdorferi
  Author: g. zanotti, e. papinutto, m. de bernard
  Keywords: dps, four-helix bundle, metal transport
  
• 2qns.pdb. signaling protein 19-jul-07 2qns
  Title: crystal structure of the g-protein betagamma subunit bound to a c-terminal region of the pth1 parathyroid hormone receptor
  Author: c. a. johnston, d. p. siderovski
  Keywords: receptor, gpcr, wd40, peptide, betagamma, acetylation, transducer, wd repeat, lipoprotein, membrane, phosphorylation, prenylation, signaling protein
  
• 2qpn.pdb. hydrolase 24-jul-07 2qpn
  Title: ges-1 beta-lactamase
  Author: c. a. smith, m. caccamo, k. a. kantardjieff, s. vakulenko
  Keywords: apo-enzyme, plasmid, hydrolase
  
• 2qug.pdb. protease inhibitor 05-aug-07 2qug
  Title: crystal structure of alpha-1-antitrypsin, crystal form a
  Author: g. hansen, c. j. morton, m. c. pearce, s. c. feil, j. j. adams, m. w. parker, s. p. bottomley
  Keywords: polymerisation, protein aggregation, protein unfolding, serpin, acute phase, disease mutation, glycoprotein, polymorphism, protease inhibitor, secreted, serine protease inhibitor
  
• 2qvf.pdb. cell adhesion 08-aug-07 2qvf Ca
  Title: mouse e-cadherin domains 1,2
  Author: k. j. carroll
  Keywords: ecad, e-cadherin, strand swap, calcium, cell adhesion, cell junction, cleavage on pair of basic residues, glycoprotein, membrane, phosphorylation, transmembrane
  
• 2qvi.pdb. cell adhesion 08-aug-07 2qvi Ca
  Title: crystal structure of n-cadherin domains ec12
  Author: l. s. shapiro, k. j. carroll
  Keywords: strand swap, domain swap, calcium, cell adhesion, cleavage on pair of basic residues, glycoprotein, membrane, phosphoprotein, transmembrane
  
• 2r26.pdb. transferase 24-aug-07 2r26
  Title: the structure of the ternary complex of carboxymethyl coenzyme a and oxalateacetate with citrate synthase from the thermophilic archaeonthermoplasma acidophilum
  Author: c. lehmann
  Keywords: oxaloacetate, carboxymethyl coa, ec 2.3.3.1, transferase
  
• 2r3z.pdb. attractant 30-aug-07 2r3z
  Title: crystal structure of mouse ip-10
  Author: t. jabeen, p. leonard, h. jamaluddin, k. r. acharya
  Keywords: chemokine, chemotaxis, inflammatory response, attractant
  
• 2r59.pdb. hydrolase 03-sep-07 2r59 Zn Yb
  Title: leukotriene a4 hydrolase complexed with inhibitor rb3041
  Author: f. tholander, j. z. haeggstrom, m. thunnissen, a. muroya, b. p. roques, m. c. fournie-zaluski
  Keywords: analogue peptide, hydrolysis, alternative splicing, cytoplasm, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease, multifunctional enzyme, protease, zinc
  
• 2rgt.pdb. metal binding protein 05-oct-07 2rgt Zn
  Title: crystal structure of lhx3 lim domains 1 and 2 with the binding domain of isl1
  Author: m. bhati, m. lee, j. m. guss, j. m. matthews
  Keywords: lim domain, zn finger, activator, alternative splicing, dna-binding, homeobox, metal-binding, nucleus, transcription, transcription regulation, zinc, metal binding protein
  
• 2ron.pdb. hydrolase 04-apr-08 2ron He Hg (NMR, 20 structures)
  Title: the external thioesterase of the surfactin-synthetase
  Author: a. koglin, f. lohr, f. bernhard, v. r. rogov, d. p. frueh, e. r. strieter, m. r. mofid, p. guentert, g. wagner, c. t. walsh, m. a. marahiel, v. doetsch
  Keywords: non-ribosomal peptide synthetase, teii, nrps, a/b hydrolase, pcp regeneration, antibiotic biosynthesis, cytoplasm, hydrolase, sporulation, stress response
  
• 2roq.pdb. transferase 05-apr-08 2roq He Hg (NMR, 20 structures)
  Title: solution structure of the thiolation-thioesterase di-domain of enterobactin synthetase component f
  Author: d. p. frueh, h. arthanari, a. koglin, d. a. vosburg, a. e. bennett, c. t. walsh, g. wagner
  Keywords: iron, iron transport, ligase, multifunctional enzyme, phosphopantetheine, transferase, transport
  
• 2v7t.pdb. transferase 01-aug-07 2v7t Cl
  Title: x-ray crystal structure of 5'-fluorodeoxyadenosine synthase s158g mutant complexed with s-adenosyl-l-homocysteine and chloride ion
  Author: x. zhu, d. o'hagan, j. h. naismith
  Keywords: mechanism of fluorination, biosynthetic protein
  
• 2v7u.pdb. transferase 02-aug-07 2v7u Cl
  Title: x-ray crystal structure of 5'-fluorodeoxyadenosine synthase s158g mutant complexed with s-adenosylmethionine and chloride ion
  Author: x. zhu, d. o'hagan, j. h. naismith
  Keywords: biosynthetic protein, transferase
  
• 2v7v.pdb. transferase 02-aug-07 2v7v F
  Title: x-ray crystal structure of 5'-fluorodeoxyadenosine synthase from streptomyces cattleya complexed with 5'-fluorodeoxyadenosine
  Author: x. zhu, d. o'hagan, j. h. naismith
  Keywords: mechanism of fluorination, biosynthetic protein
  
• 2v7w.pdb. transferase 02-aug-07 2v7w F
  Title: x-ray crystal structure of 5'-fluorodeoxyadenosine synthase s158g mutant complexed with 5'-fluorodeoxyadenosin
  Author: x. zhu, d. o'hagan, j. h. naismith
  Keywords: transferase, biosynthetic protein
  
• 2v7x.pdb. transferase 02-aug-07 2v7x F
  Title: x-ray crystal structure of 5'-fluorodeoxyadenosine synthase s158a mutant from streptomyces cattleya complexed with the products, fda and met
  Author: d. a. robinson, x. zhu, d. o'hagan, j. h. naismith
  Keywords: transferase, biosynthetic protein
  
• 2vau.pdb. oxidoreductase 04-sep-07 2vau Fe
  Title: isopenicillin n synthase with substrate analogue acomp ( unexposed)
  Author: w. ge, i. j. clifton, r. m. adlington, j. e. baldwin, p. j. rutledge
  Keywords: antibiotic biosynthesis, penicillin biosynthesis, iron, oxygenase, vitamin c, metal-binding, monocyclic intermediate, oxidoreductase, b-lactam antibiotic
  
• 2vbb.pdb. oxidoreductase 07-sep-07 2vbb Fe
  Title: isopenicillin n synthase with substrate analogue acomp ( 35minutes oxygen exposure)
  Author: w. ge, i. j. clifton, r. m. adlington, j. e. baldwin, p. j. rutledge
  Keywords: antibiotic biosynthesis, penicillin biosynthesis, iron, oxygenase, vitamin c, metal-binding, monocyclic intermediate, oxidoreductase, b-lactam antibiotic
  
• 2vim.pdb. oxidoreductase 05-dec-07 2vim
  Title: x-ray structure of fasciola hepatica thioredoxin
  Author: k. line, m. n. isupov, e. garcia-rodriguez, g. maggioli, f. parra, j. a. littlechild
  Keywords: trx, thioredoxin fold, oxidoreductase
  
• 2vkz.pdb. transferase 07-jan-08 2vkz
  Title: structure of the cerulenin-inhibited fungal fatty acid synthase type i multienzyme complex
  Author: p. johansson, b. wiltschi, p. kumari, b. kessler, c. vonrhein, j. vonck, d. oesterhelt, m. grininger
  Keywords: phosphorylation, phosphopantetheine, fatty acid synthase, multifunctional enzyme, oxidoreductase, lipid synthesis, fas, nad, nadp, lyase, cerulenin, hydrolase, fatty acid biosynthesis
  
• 2vn2.pdb. replication 30-jan-08 2vn2 Mg
  Title: crystal structure of the n-terminal domain of dnad protein from geobacillus kaustophilus hta426
  Author: c. -y. huang, y. -w. chang, w. -t. chen, y. -j. sun, c. -d. hsiao
  Keywords: dna replication, primosome, replication
  
• 2vp8.pdb. transferase 27-feb-08 2vp8
  Title: structure of mycobacterium tuberculosis rv1207
  Author: m. gengenbacher, t. xu, p. niyomwattanakit, g. spraggon, t. dick
  Keywords: mycobacterium tuberculosis, rv1207, transferase, folate biosynthesis, antibiotic resistance
  
• 2vsc.pdb. cell adhesion 22-apr-08 2vsc Mg
  Title: structure of the immunoglobulin-superfamily ectodomain of human cd47
  Author: d. hatherley, s. c. graham, j. turner, k. harlos, d. i. stuart, a. n. barclay
  Keywords: signal regulatory protein, cd47, membrane, glycoprotein, cell adhesion, immunoglobulin superfamily, pyrrolidone carboxylic acid, transmembrane, paired receptor, alternative splicing
  
• 2vsq.pdb. ligase 29-apr-08 2vsq
  Title: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide synthetase termination module
  Author: a. tanovic, s. a. samel, l. -o. essen, m. a. marahiel
  Keywords: enzymatic assembly line, surfactin a, condensation, thioesterase
  
• 2vt8.pdb. hydrolase inhibitor 12-may-08 2vt8
  Title: structure of a conserved dimerisation domain within fbox7 and pi31
  Author: r. j. kirk, j. murray-rust, p. p. knowles, h. laman, n. q. mcdonald
  Keywords: polymorphism, proteasome inhibitor, hydrolase inhibitor
  
• 2vtu.pdb. virus 15-may-08 2vtu
  Title: crystal structure of bacteriophage ms2 covalent coat protein dimer
  Author: p. plevka, k. tars, l. liljas
  Keywords: virus, dimer, virion, octahedron, rna-binding, icosahedron, coat protein, capsid protein
  
• 2vuk.pdb. transcription 26-may-08 2vuk Zn
  Title: structure of the p53 core domain mutant y220c bound to the stabilizing small-molecule drug phikan083
  Author: a. c. joerger, f. m. boeckler, a. r. fersht
  Keywords: glycoprotein
  
• 2vvj.pdb. fluorescent protein 09-jun-08 2vvj
  Title: irisfp fluorescent protein in its red form, cis conformation
  Author: v. adam, l. limousin, s. boehme, g. desfonds, k. nienhaus, m. j. field, j. wiedenmann, s. mcsweeney, g. u. nienhaus, d. bourgeois
  Keywords: photoconversion, fluorescent protein, optical highlighters, microspectrophotometry, eosfp, photochromism, photoswitching
  
• 2vwj.pdb. dna replication 25-jun-08 2vwj K
  Title: uracil recognition in archaeal dna polymerases captured by x-ray crystallography.
  Author: s. j. firbank, j. wardle, p. heslop, r. j. lewis, b. a. connolly
  Keywords: multifunctional enzyme, nucleotidyltransferase, dna-directed dna polymerase, transferase, exonuclease, dna-binding, dna polymerase, uracil, archaea, nuclease, hydrolase, dna repair
  
• 2vwk.pdb. dna replication 26-jun-08 2vwk Na
  Title: uracil recognition in archaeal dna polymerases captured by x-ray crystallography. v93q polymerase variant
  Author: s. j. firbank, j. wardle, p. heslop, r. j. lewis, b. a. connolly
  Keywords: multifunctional enzyme, nucleotidyltransferase, dna-directed dna polymerase, transferase, exonuclease, dna-binding, dna polymerase, uracil, archaea, nuclease, hydrolase, dna repair
  
• 2vxb.pdb. cell cycle 03-jul-08 2vxb Pr
  Title: structure of the crb2-brct2 domain
  Author: m. l. kilkenny, s. m. roe, l. h. pearl
  Keywords: nucleus, cell cycle, dna damage, dna replication inhibitor, phosphoprotein, checkpoint signalling
  
• 2vxc.pdb. cell cycle 03-jul-08 2vxc Pr
  Title: structure of the crb2-brct2 domain complex with phosphopeptide.
  Author: m. l. kilkenny, s. m. roe, l. h. pearl
  Keywords: nucleus, cell cycle, dna damage, dna replication inhibitor, phosphoprotein, checkpoint signalling
  
• 2vxo.pdb. ligase 08-jul-08 2vxo
  Title: human gmp synthetase in complex with xmp
  Author: m. welin, l. lehtio, j. andersson, c. h. arrowsmith, h. berglund, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. karlberg, t. kotenyova, m. moche, m. e. nilsson, t. nyman, k. olesen, c. persson, j. sagemark, h. schueler, a. g. thorsell, l. tresaugues, s. van den berg, m. wisniewska, m. wikstrom, p. nordlund
  Keywords: nucleotide metabolism, gmps, casp8, ligase, cytoplasm, atp-binding
  
• 2vyi.pdb. chaperone 24-jul-08 2vyi
  Title: crystal structure of the tpr domain of human sgt
  Author: s. dutta, y. j. tan
  Keywords: chaperone, tpr repeat, phosphoprotein, tetratricopeptide repeat protein, host-virus interaction
  
• 2vyo.pdb. hydrolase 25-jul-08 2vyo Cl Zn Ca
  Title: chitin deacetylase family member from encephalitozoon cuniculi
  Author: j. e. urch, r. hurtado guerrero, c. texier, d. m. f. van aalten
  Keywords: native protein, microsporidian, encephalitozoon, chitin deacetylase, hydrolase, inactive, cuniculi, putative, ecu11_0510
  
• 2vyw.pdb. oxygen binding 29-jul-08 2vyw Fe
  Title: hemoglobin (hb2) from trematode fasciola hepatica
  Author: s. dewilde, a. i. ioanitescu, l. kiger, k. gilany, m. c. marden, s. van doorslaer, j. vercruysse, a. pesce, m. nardini, m. bolognesi, l. moens
  Keywords: trematode, oxygen binding
  
• 2vz5.pdb. protein binding 30-jul-08 2vz5 He Cl Hg Zn
  Title: structure of the pdz domain of tax1 (human t-cell leukemia virus type i) binding protein 3
  Author: j. w. murray, n. shafqat, w. yue, e. pilka, c. johannsson, e. salah, c. cooper, j. m. elkins, a. c. pike, a. roos, p. filippakopoulos, f. von delft, m. wickstroem, c. bountra, a. m. edwards, c. h. arrowsmith, u. oppermann
  Keywords: protein binding, nucleus, cytoplasm, pdz domain
  
• 2vz7.pdb. oxidoreductase 30-jul-08 2vz7 Fe
  Title: crystal structure of the yc-17-bound pikc d50n mutant
  Author: s. li, d. h. sherman, l. m. podust
  Keywords: antibiotic biosynthesis, pikc, iron, heme, cyp107l1, monooxygenase, macrolide monooxygenase, metal-binding, cytochrome p450
  
• 2vzf.pdb. oxidoreductase 01-aug-08 2vzf
  Title: crystal structures of nadh:fmn oxidoreductase (emob)-apo form
  Author: m. s. nissen, b. youn, d. b. knowles, j. w. ballinger, s. jun, s. m. belchik, l. xun, c. kang
  
  
• 2vzh.pdb. oxidoreductase 01-aug-08 2vzh
  Title: structures of nadh:fmn oxidoreductase (emob)-fmn complex
  Author: m. s. nissen, b. youn, d. b. knowles, j. w. ballinger, s. jun, s. m. belchik, l. xun, c. kang
  
  
• 2vzj.pdb. oxidoreductase 01-aug-08 2vzj
  Title: crystal structures of nadh:fmn oxidoreductase (emob)-fmn, nadh complex
  Author: m. s. nissen, b. youn, d. b. knowles, j. w. ballinger, s. jun, s. m. belchik, l. xun, c. kang
  
  
• 2vzm.pdb. oxidoreductase 01-aug-08 2vzm Fe
  Title: crystal structure of the narbomycin-bound pikc d50n mutant
  Author: s. li, d. h. sherman, l. m. podust
  Keywords: pikc, iron, heme, cyp107l1, monooxygenase, antibiotic biosynthesis, macrolide monooxygenase, metal-binding, cytochrome p450
  
• 2z70.pdb. hydrolase 09-aug-07 2z70 Ca
  Title: e.coli rnase 1 in complex with d(cgcgatcgcg)
  Author: s. martinez-rodriguez, r. loris, j. messens
  Keywords: hydrolase, cytoplasm, endonuclease, periplasm
  
• 2z7l.pdb. transferase 27-aug-07 2z7l
  Title: unphosphorylated mitogen activated protein kinase erk2 in complex with (4-{[5-carbamoyl-4-(3-methylanilino)pyrimidin 2-yl]amino}phenyl)acetic acid
  Author: n. katayama, h. kurihara
  Keywords: serine/threonine-protein kinase, atp-binding, cell cycle, phosphorylation, acetylation, nucleotide-binding
  
• 2z8c.pdb. transferase 05-sep-07 2z8c
  Title: phosphorylated insulin receptor tyrosine kinase in complex with (4-{[5-carbamoyl-4-(3-methylanilino)pyrimidin-2- yl]amino}phenyl)acetic acid
  Author: n. katayama, h. kurihara
  Keywords: polymorphism, receptor, transmembrane, tyrosine-protein kinase, transducer
  
• 2z8d.pdb. sugar binding protein 05-sep-07 2z8d Zn
  Title: the galacto-n-biose-/lacto-n-biose i-binding protein (gl- bp) of the abc transporter from bifidobacterium longum in complex with lacto-n-biose
  Author: r. suzuki, j. wada, t. katayama, s. fushinobu
  Keywords: mucin core-1, human milk oligosacchalide, sugar binding protein
  
• 2z8e.pdb. sugar binding protein 05-sep-07 2z8e Zn
  Title: the galacto-n-biose-/lacto-n-biose i-binding protein (gl- bp) of the abc transporter from bifidobacterium longum in complex with galacto-n-biose
  Author: r. suzuki, j. wada, t. katayama, s. fushinobu
  Keywords: mucin core-1, human milk oligosacchalide, sugar binding protein
  
• 2z8f.pdb. sugar binding protein 05-sep-07 2z8f Zn Na
  Title: the galacto-n-biose-/lacto-n-biose i-binding protein (gl- bp) of the abc transporter from bifidobacterium longum in complex with lacto-n-tetraose
  Author: r. suzuki, j. wada, t. katayama, s. fushinobu
  Keywords: mucin core-1, human milk oligosacchalide, sugar binding protein
  
• 2za0.pdb. lyase 26-sep-07 2za0 Zn
  Title: crystal structure of mouse glyoxalase i complexed with methyl-gerfelin
  Author: h. okumura, m. kawatani, h. osada
  Keywords: lactoylglutathione lyase, glyoxalase i, methyl- gerfelin
  
• 2zd7.pdb. protein transport 20-nov-07 2zd7
  Title: the structure of vps75 (vacuolar protein sorting-associated protein 75)
  Author: y. j. park, k. luger
  Keywords: vps75, nap1, nucleus, phosphoprotein, protein transport, transport
  
• 2ze3.pdb. isomerase 05-dec-07 2ze3
  Title: crystal structure of dfa0005 complexed with alpha- ketoglutarate: a novel member of the icl/pepm superfamily from alkali-tolerant deinococcus ficus
  Author: c. j. liao, k. h. chin, s. h. chou
  Keywords: organic waste left-over decomposition, alkaliphilic, icl/pepm superfamily, alpha-ketoglutarate ligand, isomerase
  
• 2ze5.pdb. transferase 06-dec-07 2ze5 Cl
  Title: crystal structure of adenosine phosphate- isopentenyltransferase
  Author: h. sakakibara
  Keywords: crown gall tumor, cytokinin biosynthesis, plasmid
  
• 2ze6.pdb. transferase 06-dec-07 2ze6
  Title: crystal structure of adenosine phosphate- isopentenyltransferase complexed with substrate analog, dmaspp
  Author: h. sakakibara
  Keywords: crown gall tumor, cytokinin biosynthesis, plasmid
  
• 2ze7.pdb. transferase 06-dec-07 2ze7 Zn
  Title: crystal structure of adenosine phosphate- isopentenyltransferase complexed with zinc ion and substrate analog, dmaspp
  Author: h. sakakibara
  Keywords: crown gall tumor, cytokinin biosynthesis, plasmid
  
• 2ze8.pdb. transferase 06-dec-07 2ze8
  Title: crystal structure of adenosine phosphate- isopentenyltransferase complexed with diphosphate
  Author: h. sakakibara
  Keywords: crown gall tumor, cytokinin biosynthesis, plasmid
  
• 2zi0.pdb. gene regulation/rna 12-feb-08 2zi0 Se
  Title: crystal structure of tav2b/sirna complex
  Author: y. a. yuan, h. -y. chen
  Keywords: coiled coil, nucleus, suppressor of rna silencing, gene regulation/rna complex
  
• 2zjb.pdb. recombination 02-mar-08 2zjb
  Title: crystal structure of the human dmc1-m200v polymorphic variant
  Author: j. hikiba, k. hirota, w. kagawa, s. ikawa, t. kinebuchi, i. sakane, y. takizawa, s. yokoyama, b. mandon-pepin, a. nicolas, t. shibata, k. ohta, h. kurumizaka
  Keywords: ring protein, octamer, aaa atpase, atp- binding, cell cycle, meiosis, nucleotide-binding, nucleus, polymorphism, recombination
  
• 2zkm.pdb. hydrolase 26-mar-08 2zkm Ca
  Title: crystal structure of phospholipase c beta 2
  Author: s. n. hicks, m. r. jezyk, s. gershberg, j. p. seifert, t. k. harden, j. sondek
  Keywords: phosphoinositide phospholipase, plc-beta-2, calcium, coiled coil, hydrolase, lipid degradation, metal- binding, transducer
  
• 2zl9.pdb. hormone 04-apr-08 2zl9
  Title: 2-substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27- dimethyl-19-norvitamin d3 analogs: synthesis, biological evaluation and crystal structure
  Author: m. shimizu, y. miyamoto, m. nakabayashi, h. masuno, t. ikura, n. ito
  Keywords: dna-binding, metal-binding, nucleus, phosphoprotein, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone
  
• 2zla.pdb. hormone 04-apr-08 2zla
  Title: 2-substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27- dimethyl-19-norvitamin d3 analogs: synthesis, biological evaluation and crystal structure
  Author: m. shimizu, y. miyamoto, m. nakabayashi, h. masuno, t. ikura, n. ito
  Keywords: dna-binding, metal-binding, nucleus, phosphoprotein, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone
  
• 2zlc.pdb. hormone 04-apr-08 2zlc
  Title: 2-substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27- dimethyl-19-norvitamin d3 analogs: synthesis, biological evaluation and crystal structure
  Author: m. shimizu, y. miyamoto, m. nakabayashi, h. masuno, t. ikura, n. ito
  Keywords: dna-binding, metal-binding, nucleus, phosphoprotein, receptor, transcription, transcription regulation, zinc, zinc-finger, hormone
  
• 2zle.pdb. hydrolase 09-apr-08 2zle (cryo-electron microscopy)
  Title: cryo-em structure of degp12/omp
  Author: e. schaefer, h. r. saibil
  Keywords: htra, protease, chaperone, pdz, outer membrane protein, omp, periplasm, hydrolase, serine protease, stress response, ion transport, phage recognition, porin, transmembrane, transport
  
• 2zmc.pdb. transferase 16-apr-08 2zmc
  Title: crystal structure of human mitotic checkpoint kinase mps1 catalytic domain apo form
  Author: m. l. h. chu, l. m. g. chavas, k. t. douglas, p. a. eyers, l. tabernero
  Keywords: mps1, mitosis, atp-binding, nucleotide-binding, phosphoprotein, polymorphism, serine/threonine-protein kinase, transferase, tyrosine-protein kinase
  
• 2zmd.pdb. transferase 16-apr-08 2zmd
  Title: crystal structure of human mps1 catalytic domain t686a mutant in complex with sp600125 inhibitor
  Author: m. l. h. chu, l. m. g. chavas, k. t. douglas, p. a. eyers, l. tabernero
  Keywords: mps1, sp600125, t686a, atp-binding, nucleotide- binding, phosphoprotein, polymorphism, serine/threonine- protein kinase, transferase, tyrosine-protein kinase
  
• 2zmf.pdb. hydrolase 17-apr-08 2zmf Se
  Title: crystal structure of the c-terminal gaf domain of human phosphodiesterase 10a
  Author: n. handa, s. kishishita, e. mizohata, k. omori, j. kotera, t. terada, m. shirouzu, s. yokoyama, riken structural genomics/proteomics initiative (rsgi)
  Keywords: national project on protein structural and functional analyses, riken structural genomics/proteomics initiative, rsgi
  
• 3b35.pdb. hydrolase 19-oct-07 3b35 Zn Na
  Title: crystal structure of the m180a mutant of the aminopeptidase from vibrio proteolyticus
  Author: n. j. ataie, q. q. hoang, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b3c.pdb. hydrolase 19-oct-07 3b3c K Zn Na
  Title: crystal structure of the m180a mutant of the aminopeptidase from vibrio proteolyticus in complex with leucine phosphonic acid
  Author: n. j. ataie, q. q. hoang, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b3s.pdb. hydrolase 22-oct-07 3b3s Zn Na
  Title: crystal structure of the m180a mutant of the aminopeptidase from vibrio proteolyticus in complex with leucine
  Author: n. j. ataie, q. q. hoang, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b3t.pdb. hydrolase 22-oct-07 3b3t Zn Na
  Title: crystal structure of the d118n mutant of the aminopeptidase from vibrio proteolyticus
  Author: n. j. ataie, q. q. hoang, m. p. d. zahniser, a. milne, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b3v.pdb. hydrolase 22-oct-07 3b3v Zn Na
  Title: crystal structure of the s228a mutant of the aminopeptidase from vibrio proteolyticus
  Author: n. j. ataie, q. q. hoang, m. p. d. zahniser, a. milne, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b3w.pdb. hydrolase 22-oct-07 3b3w Zn Na
  Title: crystal structure of the s228a mutant of the aminopeptidase from vibrio proteolyticus in complex with leucine
  Author: n. j. ataie, q. q. hoang, m. p. d. zahniser, a. milne, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b58.pdb. ribonucleic acid 25-oct-07 3b58 Co
  Title: minimally junctioned hairpin ribozyme incorporates a38g mutation and a 2',5'-phosphodiester linkage at the active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: 5' phosphodiester, rna
  
• 3b5a.pdb. ribonucleic acid 25-oct-07 3b5a Co
  Title: crystal structure of a minimally hinged hairpin ribozyme incorporating a38g mutation with a 2'ome modification at the active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: 2'o-methyl, ribozyme, rna
  
• 3b5b.pdb. transferase 25-oct-07 3b5b
  Title: crystal structure of the thymidylate synthase k48q
  Author: r. r. sotelo-mundo, r. arreola, f. maley, w. r. montfort
  Keywords: 5-no2-dump, substrate anologue, cytoplasm, methyltransferase, nucleotide biosynthesis, repressor, rna-binding, transferase, translation regulation
  
• 3b5f.pdb. ribonucleic acid 25-oct-07 3b5f Co
  Title: crystal structure of a minimally hinged hairpin ribozyme incorporating the ade38dap mutation and a 2',5' phosphodiester linkage at the active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: 6 diaminopurine; rna; 2', 5' phosphodiester linkage
  
• 3b5s.pdb. ribonucleic acid 26-oct-07 3b5s Co
  Title: minimally hinged hairpin ribozyme incorporates a38dap mutation and 2'-o-methyl modification at the active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: 6 diaminopurine; 2'-o-methyl
  
• 3b7i.pdb. hydrolase 30-oct-07 3b7i K Zn Na
  Title: crystal structure of the s228a mutant of the aminopeptidase from vibrio proteolyticus in complex with leucine phosphonic acid
  Author: n. j. ataie, q. q. hoang, m. p. d. zahniser, a. milne, g. a. petsko, d. ringe
  Keywords: aminopeptidase, hydrolase, metal-binding, protease, secreted, zinc, zymogen
  
• 3b91.pdb. ribonucleic acid 02-nov-07 3b91 Co
  Title: minimally hinged hairpin ribozyme incorporates ade38(2ap) and 2',5'-phosphodiester linkage mutations at the active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  
  
• 3bbi.pdb. ribonucleic acid 09-nov-07 3bbi Co
  Title: minimally junctioned hairpin ribozyme incorporating a38(2ap) and a-1 2'-o-me modifications near active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: 2-aminopurine, 2'o-methyl, phosphoryl transfer, rna, linker
  
• 3bbk.pdb. ribonucleic acid 09-nov-07 3bbk Co
  Title: miminally junctioned hairpin ribozyme incorporates a38c and 2'5'-phosphodiester linkage within active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: rna, phosphoryl transfer, a38c, 2'5'- phosphodiester, reverse linkage
  
• 3bbm.pdb. ribonucleic acid 09-nov-07 3bbm Co
  Title: minimally junctioned hairpin ribozyme incorporates a38c and 2'o-me modification at active site
  Author: c. macelrevey, j. krucinska, j. e. wedekind
  Keywords: phosphoryl transfer, 2'o-methyl, rna, small ribozyme
  
• 3bjp.pdb. oxidoreductase 04-dec-07 3bjp Na
  Title: urate oxidase cyanide uric acid ternary complex
  Author: l. gabison, t. prange, n. colloc'h, m. el hajji, b. castro, m. chiadmi
  Keywords: cyanide, inhibition, degradation mechanism, acetylation, oxidoreductase, peroxisome, purine metabolism
  
• 3bk8.pdb. oxidoreductase 06-dec-07 3bk8 Na
  Title: urate oxidase aza-xanthine complex in cyanide
  Author: l. gabison, t. prange, n. colloc'h, m. el hajji, b. castro, m. chiadmi
  Keywords: cyanide, inhibition, degradation mechanism, acetylation, oxidoreductase, peroxisome, purine metabolism
  
• 3blh.pdb. transcription 11-dec-07 3blh
  Title: crystal structure of human cdk9/cyclint1
  Author: s. baumli, g. lolli, e. d. lowe, l. n. johnson
  Keywords: acetylation, cell cycle, cell division, coiled coil, host-virus interaction
  
• 3blq.pdb. transcription 11-dec-07 3blq Mg
  Title: crystal structure of human cdk9/cyclint1 in complex with atp
  Author: s. baumli, g. lolli, e. d. lowe, l. n. johnson
  Keywords: transferase, acetylation, cell cycle, cell division, coiled coil, host-virus interaction
  
• 3blr.pdb. transcription 11-dec-07 3blr Cl
  Title: crystal structure of human cdk9/cyclint1 in complex with flavopiridol
  Author: s. baumli, g. lolli, e. d. lowe, l. n. johnson
  Keywords: transferase, acetylation, cell cycle, cell division, coiled coil, host-virus interaction
  
• 3bm5.pdb. lyase/biosynthetic protein 12-dec-07 3bm5
  Title: crystal structure of o-acetyl-serine sulfhydrylase from entamoeba histolytica in complex with cysteine
  Author: c. krishna, m. kumar, s. kumar, s. gourinath
  Keywords: cys-oass complex, domain movement, pyridoxal phosphate, lyase, lyase/biosynthetic protein complex
  
• 3bt9.pdb. transcription 28-dec-07 3bt9
  Title: crystal structure of qacr(e57q) bound to dequalinium
  Author: m. a. shumacher, j. t. schuman, r. g. brennan
  Keywords: multidrug binding, dequalinium, bivalent drug, dna- binding, plasmid, repressor, transcription, transcription regulation
  
• 3btc.pdb. transcription 28-dec-07 3btc
  Title: crystal structure of qacr(e57q) bound to malachite green
  Author: m. a. schumacher, j. t. schuman, r. g. brennan
  Keywords: multidrug binding, malachite green, dye, dna-binding, plasmid, repressor, transcription, transcription regulation
  
• 3bti.pdb. transcription 28-dec-07 3bti
  Title: crystal structure of qacr(e58q) bound to berberine
  Author: m. a. schumacher, j. t. schuman, r. g. brennan
  Keywords: multidrug binding, berberine, natural drug, dna- binding, plasmid, repressor, transcription, transcription regulation
  
• 3btj.pdb. transcription 28-dec-07 3btj
  Title: crystal structure of qacr(e58q) bound to dequalinium
  Author: m. a. schumacher, j. t. schuman, r. g. brennan
  Keywords: multidrug binding, dequalinium, bivalent drug, dna- binding, plasmid, repressor, transcription, transcription regulation
  
• 3btl.pdb. transcription 28-dec-07 3btl
  Title: crystal structure of qacr(e58q) bound to malachite green
  Author: m. a. schumacher, j. t. schuman, r. g. brennan
  Keywords: multidrug binding, malachite green, dye, dna-binding, plasmid, repressor, transcription, transcription regulation
  
• 3bu7.pdb. oxidoreductase 02-jan-08 3bu7 Fe
  Title: crystal structure and biochemical characterization of gdosp, a gentisate 1,2-dioxygenase from silicibacter pomeroyi
  Author: j. chen, m. z. wang, g. y. zhu, x. c. zhang, z. h. rao
  Keywords: dioxygenase, oxidoreductase, plasmid
  
• 3bvp.pdb. recombination 07-jan-08 3bvp
  Title: crystal structure of the n-terminal catalytic domain of tp901-1 integrase
  Author: p. yuan, g. d. van duyne
  Keywords: recombination
  
• 3by8.pdb. transferase 15-jan-08 3by8
  Title: crystal structure of the e.coli dcus sensor domain
  Author: j. cheung, w. a. hendrickson
  Keywords: inner membrane, membrane, phosphoprotein, transferase, transmembrane, two-component regulatory system
  
• 3by9.pdb. transferase 15-jan-08 3by9 Ca Se
  Title: crystal structure of the e. coli histidine kinase dcus sensor domain
  Author: j. cheung, w. a. hendrickson
  Keywords: phosphoprotein, transferase, two-component regulatory system
  
• 3c3f.pdb. de novo protein 28-jan-08 3c3f He Hg
  Title: alpha/beta-peptide helix bundles: the gcn4-pli side chain sequence on an (alpha-alpha-alpha-beta) backbone
  Author: w. s. horne, j. l. price, s. h. gellman
  Keywords: foldamer, coiled coil, unknown function, de novo protein
  
• 3c3g.pdb. de novo protein 28-jan-08 3c3g Hg
  Title: alpha/beta-peptide helix bundles: the gcn4-pli side chain sequence on an (alpha-alpha-beta) backbone
  Author: w. s. horne, j. l. price, s. h. gellman
  Keywords: foldamer, coiled coil, alpha/beta-peptide, unknown function, de novo protein
  
• 3c3h.pdb. de novo protein 28-jan-08 3c3h Hg
  Title: alpha/beta-peptide helix bundles: a gcn4-pli analogue with an (alpha-alpha-beta) backbone and cyclic beta residues
  Author: w. s. horne, j. l. price, s. h. gellman
  Keywords: foldamer, alpha/beta-peptide, coiled coil, unknown function, de novo protein
  
• 3c67.pdb. hydrolase 04-feb-08 3c67 Ca
  Title: escherichia coli k12 ygjk in a complexed with glucose
  Author: y. kurakata, a. uechi, h. yoshida, s. kamitori, y. sakano, a. nishikawa, t. tonozuka
  Keywords: processing alpha-glucosidase, alpha/alpha barrel, hydrolase
  
• 3c68.pdb. hydrolase 04-feb-08 3c68 Ca
  Title: escherichia coli k12 ygjk in a complexed with mannose
  Author: y. kurakata, a. uechi, h. yoshida, s. kamitori, y. sakano, a. nishikawa, t. tonozuka
  Keywords: processing alpha-glucosidase, alpha/alpha barrel, hydrolase
  
• 3c69.pdb. hydrolase 04-feb-08 3c69 Ca
  Title: escherichia coli k12 ygjk in a complexed with galactose
  Author: y. kurakata, a. uechi, h. yoshida, s. kamitori, y. sakano, a. nishikawa, t. tonozuka
  Keywords: processing alpha-glucosidase, alpha/alpha barrel, hydrolase
  
• 3c6b.pdb. hydrolase 04-feb-08 3c6b
  Title: reaction product of paraoxon and s-formylglutathione hydrolase w197i mutant
  Author: p. m. legler, c. b. millard
  Keywords: serine hydrolase, thioesterase, formaldehyde, organophosphate, cytoplasm, serine esterase
  
• 3c6x.pdb. lyase 06-feb-08 3c6x He Hg
  Title: hnl from hevea brasiliensis to atomic resolution
  Author: a. schmidt
  Keywords: hydroxynitril lyase, catalysis, protonation state, ab initio calculations, substrate binding
  
• 3c6y.pdb. lyase 06-feb-08 3c6y He Hg
  Title: hnl from hevea brasiliensis to atomic resolution
  Author: a. schmidt
  Keywords: hydroxynitril lyase, catalysis, protonation state, ab initio calculations, substrate binding
  
• 3c6z.pdb. lyase 06-feb-08 3c6z He Hg
  Title: hnl from hevea brasiliensis to atomic resolution
  Author: a. schmidt
  Keywords: hydroxynitril lyase, catalysis, protonation state, ab initio calculations, substrate binding
  
• 3c70.pdb. lyase 06-feb-08 3c70 He Hg
  Title: hnl from hevea brasiliensis to atomic resolution
  Author: a. schmidt
  Keywords: hydroxynitril lyase, catalysis, protonation state, ab initio calculations, substrate binding
  
• 3c71.pdb. oxidoreductase 06-feb-08 3c71
  Title: struture of a resa variant with a dsba-like active site motif (cphc)
  Author: a. crow
  Keywords: cytochrome c-type biogenesis, membrane, oxidoreductase, redox-active center, signal- anchor, transmembrane
  
• 3c73.pdb. oxidoreductase 06-feb-08 3c73
  Title: structure of cehc variant resa
  Author: a. crow
  Keywords: cytochrome c-type biogenesis, membrane, oxidoreductase, redox-active center, signal- anchor, transmembrane
  
• 3c7i.pdb. splicing 07-feb-08 3c7i
  Title: x-ray crystal structure of the complex between the grb2-sh2 domain and a flexible ligand, fptvn.
  Author: a. p. benfield, s. f. martin
  Keywords: constrained, entropy, grb2-sh2, ligand preorganization, alternative splicing, host-virus interaction, phosphoprotein, sh2 domain, sh3 domain
  
• 3c7n.pdb. chaperone/chaperone 07-feb-08 3c7n Cl Mg F Be
  Title: structure of the hsp110:hsc70 nucleotide exchange complex
  Author: j. p. schuermann, j. jiang, p. j. hart, r. sousa
  Keywords: nucleotide-binding, phosphoprotein, nucleus, transcription, chaperone/chaperone complex
  
• 3c9b.pdb. chaperone 15-feb-08 3c9b Se
  Title: crystal structure of semet vps75
  Author: j. l. keck, c. e. berndsen, t. tsubota, s. e. lindner, s. lee, j. m. holton, p. d. kaufman, j. m. denu
  Keywords: hat, histone chaperone, nucleus, phosphoprotein, protein transport, transport
  
• 3c9d.pdb. chaperone 15-feb-08 3c9d
  Title: crystal structure of vps75
  Author: c. e. berndsen, t. tsubota, s. e. lindner, s. lee, j. m. holton, p. d. kaufman, j. l. keck, j. m. denu
  Keywords: histone chaperone, nucleus, phosphoprotein, protein transport, transport
  
• 3cbr.pdb. thyroxine binding protein 22-feb-08 3cbr
  Title: crystal structure of human transthyretin (ttr) at ph3.5
  Author: n. n. mohamedmohaideen, s. k. palaninathan, w. c. snee, j. w. kelly, j. c sacchettini
  Keywords: thyroxine binding protein
  
• 3cct.pdb. oxidoreductase 26-feb-08 3cct F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3ccw.pdb. oxidoreductase 26-feb-08 3ccw F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3ccz.pdb. oxidoreductase 26-feb-08 3ccz F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3cd0.pdb. oxidoreductase 26-feb-08 3cd0 F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3cd5.pdb. oxidoreductase 26-feb-08 3cd5
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3cd7.pdb. oxidoreductase 26-feb-08 3cd7 F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3cda.pdb. oxidoreductase 26-feb-08 3cda F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3cdb.pdb. oxidoreductase 26-feb-08 3cdb F
  Title: thermodynamic and structure guided design of statin hmg-coa reductase inhibitors
  Author: a. pavlovsky, r. w. sarver, m. s. harris, b. c. finzel
  Keywords: cholesterol biosynthesis, hmg-coa, nadph, statin, alternative splicing, endoplasmic reticulum, glycoprotein, lipid synthesis, membrane, peroxisome, polymorphism, steroid biosynthesis, transmembrane
  
• 3ceq.pdb. motor protein, transport protein 29-feb-08 3ceq
  Title: the tpr domain of human kinesin light chain 2 (hklc2)
  Author: h. zhu, y. shen, f. mackenzie, c. h. arrowsmith, a. m. edwards, c. bountra, j. weigelt, a. bochkarev, h. park, structural genomics consortium (sgc)
  Keywords: structural genomics consortium, sgc, coiled coil, microtubule, phosphoprotein, polymorphism, tpr repeat, motor protein, transport protein
  
• 3chg.pdb. ligand binding protein 09-mar-08 3chg
  Title: the compatible solute-binding protein opuac from bacillus subtilis in complex with dmsa
  Author: s. h. j. smits, m. hoing, j. lecher, m. jebbar, l. schmitt, e. bremer
  Keywords: substrate binding protein, ligand binding protein
  
• 3cl4.pdb. hydrolase 18-mar-08 3cl4 K
  Title: crystal structure of bovine coronavirus hemagglutinin- esterase
  Author: q. h. zeng, m. a. langereis, a. l. w. van vliet, e. g. huizinga, r. j. de groot
  Keywords: swiss roll, envelope protein, glycoprotein, hemagglutinin, membrane, transmembrane, virion
  
• 3cl5.pdb. hydrolase 18-mar-08 3cl5 K
  Title: structure of coronavirus hemagglutinin-esterase in complex with 4,9-o-diacetyl sialic acid
  Author: q. h. zeng, m. a. langereis, a. l. w. van vliet, e. g. huizinga, r. j. de groot
  Keywords: swiss roll, envelope protein, glycoprotein, hemagglutinin, membrane, transmembrane, virion
  
• 3cmc.pdb. oxidoreductase 21-mar-08 3cmc
  Title: thioacylenzyme intermediate of bacillus stearothermophilus phosphorylating gapdh
  Author: s. moniot, c. vonrhein, g. bricogne, c. didierjean, c. corbier
  Keywords: reaction intermediate, dehydrogenase, phosphate binding site, thioacylenzyme, cytoplasm, glycolysis, nad, oxidoreductase
  
• 3cmr.pdb. hydrolase 24-mar-08 3cmr Mg Zn
  Title: e. coli alkaline phosphatase mutant r166s in complex with phosphate
  Author: p. j. o'brien, j. k. lassila, t. d. fenn, j. g. zalatan, d. herschlag
  Keywords: phosphoryl transfer, arginine, phosphate, hydrolase, magnesium, metal-binding, periplasm, phosphoprotein, zinc
  
• 3cnc.pdb. viral protein 25-mar-08 3cnc
  Title: crystal structure of ad16 fiber knob
  Author: l. pache, s. venkataraman, g. r. nemerow, v. s. reddy
  Keywords: viral protein
  
• 3cnl.pdb. signaling protein 26-mar-08 3cnl
  Title: crystal structure of gnp-bound ylqf from t. maritima
  Author: d. j. kim, j. y. jang, h. -j. yoon, s. w. suh
  Keywords: circular permutation, gnp, signaling protein
  
• 3cnn.pdb. signaling protein 26-mar-08 3cnn
  Title: gtp-bound structure of tm ylqf
  Author: d. j. kim, j. y. jang, h. -j. yoon, s. w. suh
  Keywords: circular permutation, gtp, signaling protein
  
• 3cno.pdb. signaling protein 26-mar-08 3cno
  Title: gdp-bound structue of tm ylqf
  Author: d. j. kim, j. y. jang, h. -j. yoon, s. w. suh
  Keywords: circular permutation, gdp, signaling protein
  
• 3cql.pdb. hydrolase 03-apr-08 3cql
  Title: crystal structure of gh family 19 chitinase from carica papaya
  Author: j. huet, p. rucktoa, b. clantin, m. azarkan, y. looze, v. villeret, r. wintjens
  Keywords: chitinase, n-acetyl-d-glucosamine, carbohydrate metabolism, chitin degradation, chitin-binding, glycosidase, hydrolase, polysaccharide degradation, vacuole
  
• 3cs8.pdb. nuclear protein 09-apr-08 3cs8
  Title: structural and biochemical basis for the binding selectivity of pparg to pgc-1a
  Author: y. li, d. martynowski
  Keywords: zinc-finger, rna-binding, nuclear protein
  
• 3cw3.pdb. oncoprotein 21-apr-08 3cw3
  Title: crystal structure of aim1g1
  Author: p. aravind, r. sankaranarayanan, y. sharma
  Keywords: lectin, oncoprotein
  
• 3cwb.pdb. oxidoreductase 21-apr-08 3cwb I Fe
  Title: chicken cytochrome bc1 complex inhibited by an iodinated analogue of the polyketide crocacin-d
  Author: l. huang, t. cromartie, r. viner, p. j. crowley, e. a. berry
  Keywords: transport
  
• 3cx3.pdb. metal binding protein 23-apr-08 3cx3 Zn Na Se
  Title: crystal structure analysis of the streptococcus pneumoniae adcaii protein
  Author: e. loisel, c. durmort, l. jacquamet
  Keywords: lipoprotein, transport, lipid binding protein, metal binding protein
  
• 3cyn.pdb. oxidoreductase 25-apr-08 3cyn
  Title: the structure of human gpx8
  Author: k. l. kavanagh, c. johansson, w. w. yue, g. kochan, a. c. w. pike, j. murray, a. k. roos, p. filippakopoulos, f. von delft, c. h. arrowsmith, m. wikstrom, a. m. edwards, c. bountra, u. oppermann, structural genomics consortium (sgc)
  Keywords: glutathione peroxidase, membrane, oxidoreductase, transmembrane, structural genomics, structural genomics consortium, sgc
  
• 3czu.pdb. transferase/signaling protein 30-apr-08 3czu
  Title: crystal structure of the human ephrin a2- ephrin a1 complex
  Author: j. r. walker, l. yermekbayeva, a. seitova, c. butler-cole, c. bountra, m. wikstrom, c. h. arrowsmith, a. m. edwards, a. bochkarev, s. dhe- paganon, structural genomics consortium (sgc)
  Keywords: alternative splicing, gpi-anchor, lipoprotein, transferase/signaling protein complex
  
• 3d1z.pdb. hydrolase 07-may-08 3d1z Cl
  Title: crystal structure of hiv-1 mutant i54m and inhibitor darunavir
  Author: f. liu, a. y. kovalesky, y. tie, a. k. ghosh, r. w. harrison, i. t. weber
  Keywords: flap mutant, i54m, darunavir, hydrolase
  
• 3d2a.pdb. hydrolase 08-may-08 3d2a
  Title: structure of 1-17a4, a thermostable mutant of bacillus subtilis lipase obtained through directed evolution
  Author: r. sankaranarayanan, m. z. kamal
  Keywords: alpha/beta hydrolase, stability, directed evolution, hydrolase, lipid degradation, secreted
  
• 3d2b.pdb. hydrolase 08-may-08 3d2b
  Title: structure of 2d9, a thermostable mutant of bacillus subtilis lipase obtained through directed evolution
  Author: r. sankaranarayanan, m. z. kamal
  Keywords: alpha/beta hydrolase, stability, directed evolution, hydrolase, lipid degradation, secreted
  
• 3d2c.pdb. hydrolase 08-may-08 3d2c
  Title: structure of 4d3, a thermostable mutant of bacillus subtilis lipase obtained through directed evolution
  Author: r. sankaranarayanan, m. z. kamal
  Keywords: alpha/beta hydrolase, stability, directed evolution, hydrolase, lipid degradation, secreted
  
• 3d3i.pdb. hydrolase 12-may-08 3d3i Ca Se
  Title: crystal structural of escherichia coli k12 ygjk, a glucosidase belonging to glycoside hydrolase family 63
  Author: y. kurakata, a. uechi, h. yoshida, s. kamitori, y. sakano, a. nishikawa, t. tonozuka
  Keywords: processing alpha-glucosidase, alpha/alpha barrel, hydrolase
  
• 3d40.pdb. transferase 13-may-08 3d40
  Title: crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with diphosphate
  Author: s. pakhomova, s. g. bartlett, a. augustus, t. kuzuyama, m. e. newcomer
  Keywords: antibiotic resistance, kinase, phosphoryl transfer, transferase
  
• 3d41.pdb. transferase 13-may-08 3d41 Mg
  Title: crystal structure of fosfomycin resistance kinase foma from streptomyces wedmorensis complexed with mgamppnp and fosfomycin
  Author: s. pakhomova, s. g. bartlett, a. augustus, t. kuzuyama, m. e. newcomer
  Keywords: antibiotic resistance, kinase, phosphoryl transfer, transferase
  
• 3d54.pdb. ligase 15-may-08 3d54 Na
  Title: stucture of purlqs from thermotoga maritima
  Author: s. e. ealick, m. morar
  Keywords: atp-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis, glutamine amidotransferase, ligase/unknown function complex
  
• 3d6r.pdb. viral protein 20-may-08 3d6r
  Title: structure of an avian influenza a virus ns1 protein effector domain
  Author: b. g. hale, w. s. barclay, r. e. randall, r. j. russell
  Keywords: ns1, effector domain, alternative splicing, cytoplasm, host-virus interaction, interferon antiviral system evasion, nucleus, rna-binding, suppressor of rna silencing, viral protein
  
• 3d7p.pdb. transport protein 21-may-08 3d7p
  Title: crystal structure of human transthyretin (ttr) at ph 4.0
  Author: s. k. palaninathan, n. n. mohamedmohaideen, w. c. snee, j. w. kelly, j. c. sacchettini
  Keywords: thyroid hormone, transport, vitamin a, transport protein
  
• 3d8c.pdb. transcription regulator, oxidoreductase 23-may-08 3d8c Zn
  Title: factor inhibiting hif-1 alpha d201g mutant in complex with zn(ii), alpha-ketoglutarate and hif-1 alpha 19mer
  Author: m. a. mcdonough, r. chowdhury, c. j. schofield
  Keywords: transcription regulation
  
• 3d8n.pdb. lyase 23-may-08 3d8n
  Title: uroporphyrinogen iii synthase-uroporphyringen iii complex
  Author: h. l. schubert
  Keywords: lyase
  
• 3d8t.pdb. lyase 23-may-08 3d8t
  Title: thermus thermophilus uroporphyrinogen iii synthase
  Author: h. l. schubert
  Keywords: lyase
  
• 3dal.pdb. transferase 29-may-08 3dal
  Title: methyltransferase domain of human pr domain-containing protein 1
  Author: m. f. amaya, h. zeng, t. antoshenko, a. dong, p. loppnau, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, j. min, a. n. plotnikov, h. wu, structural genomics consortium (sgc)
  Keywords: dna binding protein
  
• 3db5.pdb. transferase 30-may-08 3db5 Se
  Title: crystal structure of methyltransferase domain of human pr domain-containing protein 4
  Author: m. f. amaya, h. zeng, p. loppnau, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, j. min, a. n. plotnikov, h. wu, structural genomics consortium (sgc)
  Keywords: prdm4, structural genomics, structural genomics consortium, sgc, dna-binding, metal-binding, nucleus, transcription, transcription regulation, zinc, zinc-finger
  
• 3dbh.pdb. cell cycle 31-may-08 3dbh Zn
  Title: structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190ala-nedd8ala72arg)
  Author: j. souphron, b. a. schulman
  Keywords: activating enzyme, apoptosis, membrane, ubl conjugation pathway, atp-binding, ligase, nucleotide- binding, polymorphism, nucleus
  
• 3dbl.pdb. cell cycle 01-jun-08 3dbl Zn
  Title: structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190wt-nedd8ala72gln)
  Author: j. souphron, b. a. schulman
  Keywords: activating enzyme, apoptosis, membrane, ubl conjugation pathway, atp-binding, ligase, nucleotide- binding, polymorphism, nucleus
  
• 3dbr.pdb. cell cycle 02-jun-08 3dbr Zn
  Title: structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1- uba3arg190gln-nedd8ala72arg)
  Author: j. souphron, b. a. schulman
  Keywords: activating enzyme, apoptosis, membrane, ubl conjugation pathway, atp-binding, ligase, nucleotide- binding, polymorphism, nucleus
  
• 3dct.pdb. transcription/transcription activator 04-jun-08 3dct Cl
  Title: fxr with src1 and gw4064
  Author: s. p. williams, k. p. madauss
  Keywords: acyltransferase, chromosomal rearrangement, phosphoprotein, polymorphism, proto-oncogene, transferase, ubl conjugation, transcription/transcription activator complex
  
• 3dcu.pdb. transcription/transcription activator 04-jun-08 3dcu Cl
  Title: fxr with src1 and gsk8062
  Author: s. p. williams, k. p. madauss
  Keywords: acyltransferase, chromosomal rearrangement, phosphoprotein, polymorphism, proto-oncogene, transferase, ubl conjugation, transcription/transcription activator complex
  
• 3dd8.pdb. lyase 05-jun-08 3dd8 Hg Zn
  Title: carbonic anhydrase inhibitors. interaction of the antitumor sulfamate emd-486019 with twelve mammalian isoforms: kinetic and x-ray crystallographic studies
  Author: c. temperini, a. innocenti, a. scozzafava, c. t. supuran
  Keywords: inhibitors, crystal structure, antiglaucoma, oao-acid, acetylation, cytoplasm, disease mutation, lyase, metal-binding, polymorphism, zinc
  
• 3ddc.pdb. hydrolase/apoptosis 05-jun-08 3ddc Mg
  Title: crystal structure of nore1a in complex with ras
  Author: b. stieglitz, c. bee, d. schwarz, o. yildiz, a. moshnikova, a. khokhlatchev, c. herrmann
  Keywords: microtubule, phorbol-ester binding, zinc, zinc- finger
  
• 3deo.pdb. protein transport, membrane protein 10-jun-08 3deo Mg
  Title: structural basis for specific substrate recognition by the chloroplast signal recognition particle protein cpsrp43
  Author: k. f. stengel, k. wild, i. sinning
  Keywords: ribonucleoprotein, protein transport, membrane protein
  
• 3dep.pdb. protein transport, membrane protein 10-jun-08 3dep Cl
  Title: structural basis for specific substrate recognition by the chloroplast signal recognition particle protein cpsrp43
  Author: i. holdermann, k. f. stengel, k. wild, i. sinning
  Keywords: ribonucleoprotein, protein transport, membrane protein
  
• 3dfd.pdb. structural genomics, unknown function 11-jun-08 3dfd Mn Se
  Title: crystal structure of the protein yqbn. northeast structural genomics consortium target sr445.
  Author: a. p. kuzin, m. su, j. seetharaman, d. wang, y. fang, k. cunningham, l. - c. ma, r. xiao, m. liu, m. c. baran, t. b. acton, b. rost, g. t. montelione, j. f. hunt, l. tong, northeast structural genomics consortium (nesg)
  Keywords: structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, unknown function
  
• 3dgg.pdb. immune system 13-jun-08 3dgg Mg
  Title: crystal structure of fabox108
  Author: j. ren, j. e. nettleship, r. j. owens, oxford protein production facility (oppf)
  Keywords: fabs, transient expression, structural genomics, oxford protein production facility, oppf, immunoglobulin domain, immune system
  
• 3dhn.pdb. isomerase, lyase 18-jun-08 3dhn Se
  Title: crystal structure of the putative epimerase q89z24_bactn from bacteroides thetaiotaomicron. northeast structural genomics consortium target btr310.
  Author: s. m. vorobiev, m. su, j. seetharaman, d. wang, c. ciccosanti, l. e. foote, h. janjua, r. xiao, t. acton, g. t. montelione, l. tong, j. f. hunt, northeast structural genomics consortium (nesg)
  Keywords: reductase, dehydratase, pf01370, q89z24_bactn, nesg, btr310, structural genomics, psi-2, protein structure initiative, northeast structural genomics consortium, isomerase, lyase
  
• 3dhu.pdb. hydrolase 18-jun-08 3dhu
  Title: crystal structure of an alpha-amylase from lactobacillus plantarum
  Author: j. b. bonanno, m. dickey, k. t. bain, m. iizuka, s. ozyurt, d. smith, s. wasserman, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: hydrolase, glycosidase, psi-2, protein structure initiative, new york sgx research center for structural genomics, nysgxrc
  
• 3di0.pdb. lyase 19-jun-08 3di0
  Title: crystal structure of dihydrodipicolinate synthase from staphylococcus aureus
  Author: g. s. tavarekere
  Keywords: lysine biosynthesis, feeb- back inhibition, ping-pong mechanism, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, schiff base
  
• 3di1.pdb. lyase 19-jun-08 3di1
  Title: crystal structure of the staphylococcus aureus dihydrodipicolinate synthase-pyruvate complex
  Author: g. s. tavarekere
  Keywords: lysine biosynthesis, feedback inhibition, ping-pong mechanism, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, schiff base
  
• 3dif.pdb. immune system 20-jun-08 3dif
  Title: crystal structure of fabox117
  Author: j. e. nettleship, j. ren, r. j. owens, oxford protein production facility (oppf)
  Keywords: fabs, transient expression, structural genomics, oxford protein production facility, oppf, immunoglobulin domain, immune system
  
• 3djd.pdb. oxidoreductase 23-jun-08 3djd Se
  Title: structural study of a deglycating enzyme
  Author: f. collard, j. zhang, i. nemet, k. r. qanungo, v. m. monnier, v. c. yee
  Keywords: amadoriase, deglycation, oxidoreductase, fructosamine oxidase
  
• 3dje.pdb. oxidoreductase 23-jun-08 3dje Se
  Title: structural study of a deglycating enzyme
  Author: f. collard, j. zhang, i. nemet, k. r. qanungo, v. m. monnier, v. c. yee
  Keywords: amadoriase, deglycation, oxidoreductase, fructosamine oxidase
  
• 3dkp.pdb. hydrolase 25-jun-08 3dkp Mg
  Title: human dead-box rna-helicase ddx52, conserved domain i in complex with adp
  Author: l. lehtio, t. karlberg, j. andersson, c. h. arrowsmith, h. berglund, r. collins, l. g. dahlgren, a. m. edwards, s. flodin, a. flores, s. graslund, m. hammarstrom, a. johansson, i. johansson, t. kotenyova, m. moche, m. e. nilsson, p. nordlund, t. nyman, k. olesen, c. persson, j. sagemark, a. g. thorsell, l. tresaugues, s. van den berg, m. welin, m. wisniewska, m. wikstrom, h. schueler, structural genomics consortium (sgc)
  Keywords: dead, adp, structural genomics, structural genomics consortium, sgc, rrna, atp-binding, hydrolase, nucleotide-binding, nucleus, phosphoprotein, rna-binding
  
• 3dkq.pdb. oxidoreductase 25-jun-08 3dkq Ni Se
  Title: crystal structure of putative oxygenase (yp_001051978.1) from shewanella baltica os155 at 2.26 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative oxygenase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, dioxygenase, iron, metal- binding, oxidoreductase, vitamin c
  
• 3dle.pdb. transferase 27-jun-08 3dle Cl
  Title: crystal structure of hiv-1 reverse transcriptase in complex with gf128590.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gf128590, drug resistance, hydrolase, transferase
  
• 3dlg.pdb. transferase 27-jun-08 3dlg Cl F
  Title: crystal structure of hiv-1 reverse transcriptase in complex with gw564511.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gw564511, drug resistance, transferase, hydrolase
  
• 3dlm.pdb. transferase 27-jun-08 3dlm
  Title: crystal structure of tudor domain of human histone-lysine n- methyltransferase setdb1
  Author: m. f. amaya, l. dombrovski, p. loppnau, c. bountra, j. weigelt, c. h. arrowsmith, a. m. edwards, a. bochkarev, j. min, h. wu, structural genomics consortium (sgc)
  Keywords: polymorphism, repressor, s-adenosyl-l-methionine, transcription, transcription regulation
  
• 3dlx.pdb. transferase 30-jun-08 3dlx
  Title: crystal structure of human 3-oxoacid coa transferase 1
  Author: k. l. kavanagh, n. shafqat, w. w. yue, s. picaud, j. w. murray, e. m. maclean, f. von delft, a. k. roos, c. h. arrowsmith, m. wikstrom, a. m. edwards, c. bountra, u. oppermann, structural genomics consortium (sgc)
  Keywords: scot, succinyl-coa:3-ketoacid-coenzyme a transferase 1, disease mutation, mitochondrion, polymorphism, transit peptide, structural genomics, structural genomics consortium, sgc
  
• 3dm2.pdb. transferase 30-jun-08 3dm2 Cl F
  Title: crystal structure of hiv-1 k103n mutant reverse transcriptase in complex with gw564511.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gw564511, drug resistance, k103n mutation, hydrolase, transferase
  
• 3dmj.pdb. transferase 01-jul-08 3dmj Cl F
  Title: crystal structure of hiv-1 v106a and y181c mutant reverse transcriptase in complex with gw564511.
  Author: j. ren, p. p. chamberlain, d. k. stammers
  Keywords: aids, nnrti, gw564511, drug resistance, hydrolase, transferase
  
• 3dok.pdb. transferase 04-jul-08 3dok Cl
  Title: crystal structure of k103n mutant hiv-1 reverse transcriptase in complex with gw678248.
  Author: p. p. chamberlain, j. ren, d. k. stammers
  Keywords: aids, nnrti, gw678248, drug resistance, hydrolase, transferase
  
• 3dol.pdb. transferase 04-jul-08 3dol Cl
  Title: crystal structure of l100i mutant hiv-1 reverse transcriptase in complex with gw695634.
  Author: p. p. chamberlain, j. ren, d. k. stammers
  Keywords: aids, nnrti, gw695634, drug resistance, hydrolase, transferase
  
• 3dpt.pdb. signaling protein 09-jul-08 3dpt
  Title: cor domain of rab family protein (roco)
  Author: k. gotthardt, m. weyand, a. kortholt, p. j. m. van haastert, a. wittinghofer
  Keywords: alpha-beta-protein, signaling protein
  
• 3dpu.pdb. signaling protein 09-jul-08 3dpu
  Title: roccor domain tandem of rab family protein (roco)
  Author: k. gotthardt, m. weyand, a. kortholt, p. j. m. van haastert, a. wittinghofer
  Keywords: g-domain, cor, gtp-binding, nucleotide-binding, signaling protein
  
• 3dr8.pdb. transferase 10-jul-08 3dr8 Cl Se
  Title: structure of ynca, a putative acteyltransferase from salmonella typhimurium with its cofactor acetyl-coa
  Author: a. u. singer, t. skarina, o. onopriyenko, a. m. edwards, w. f. anderson, a. savchenko, center for structural genomics of infectious diseases (csgid)
  Keywords: csgid
  
• 3dsa.pdb. transport protein 11-jul-08 3dsa Se
  Title: crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2
  Author: b. nocek, n. maltseva, m. gu, a. joachimiak, center for structural genomics of infectious diseases (csgid)
  Keywords: rbsd, decamer, csgid, transport protein, structural genomics, center for structural genomics of infectious diseases
  
• 3dsq.pdb. ligase 14-jul-08 3dsq Cl Na
  Title: structure of desulfitobacterium hafniense pylsc, a pyrrolysyl trna synthetase
  Author: m. m. lee, m. k. chan
  Keywords: aminoacyl-trna synthetase, ligase
  
• 3dtt.pdb. oxidoreductase 15-jul-08 3dtt Cl Se
  Title: crystal structure of putative coenzyme f420h2:nadp+ oxidoreductase (yp_830112.1) from arthrobacter sp. fb24 at 1.70 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative coenzyme f420h2:nadp+ oxidoreductase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3dvv.pdb. ribonucleic acid 21-jul-08 3dvv Cl K
  Title: crystal structure of hiv-1 subtype f dis extended duplex rna bound to ribostamycin (u267ome)
  Author: e. ennifar, p. dumas, v. olieric
  Keywords: rna, antibiotic, aminoglycoside
  
• 3dwu.pdb. biosynthetic protein 23-jul-08 3dwu (cryo-electron microscopy)
  Title: transition-state model conformation of the switch i region fitted into the cryo-em map of the eef2.80s.alf4.gdp complex
  Author: p. nissen, j. nyborg, m. kjeldgaard
  Keywords: biosynthetic protein
  
• 3dxo.pdb. structural genomics, unknown function 24-jul-08 3dxo Se
  Title: crystal structure of snoal-like protein with unknown function (17739112) from agrobacterium tumefaciens str. c58 (dupont) at 2.70 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: snoal-like protein with unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3dxp.pdb. structural genomics, unknown function 24-jul-08 3dxp Ca Se
  Title: crystal structure of putative acyl-coa dehydrogenase (yp_295230.1) from ralstonia eutropha jmp134 at 2.32 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative acyl-coa dehydrogenase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, transferase, unknown function
  
• 3dz1.pdb. lyase 29-jul-08 3dz1 Se
  Title: crystal structure of dihydrodipicolinate synthase from rhodopseudomonas palustris at 1.87a resolution
  Author: l. satyanarayana, s. eswaramoorthy, s. k. burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
  Keywords: pyruvate, tim barrel, nysgxrc, 11102o, psi2, structural genomics, protein structure initiative, new york sgx research center for structural genomics, lyase
  
• 3dz8.pdb. protein transport 29-jul-08 3dz8
  Title: crystal structure of human rab3b gtpase bound with gdp
  Author: y. shen, y. tong, d. sukumar, w. tempel, p. loppnau, c. h. arrowsmith, a. m. edwards, c. bountra, m. wilkstrom, a. bochkarev, h. park, structural genomics consortium (sgc)
  Keywords: gdp, gtpase, structural genomics consortium, sgc, cell membrane, gtp-binding, lipoprotein, membrane, methylation, nucleotide-binding, phosphoprotein, prenylation, protein transport, transport
  
• 3dza.pdb. structural genomics, unknown function 29-jul-08 3dza Zn Se
  Title: crystal structure of putative membrane protein of unknown function (yp_001337144.1) from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.65 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative membrane protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3dzb.pdb. biosynthetic protein 29-jul-08 3dzb Se
  Title: crystal structure of prephenate dehydrogenase from streptococcus thermophilus
  Author: z. zhang, s. eswaramoorthy, s. k burley, s. swaminathan, new york sgx research center for structural genomics (nysgxrc)
  Keywords: biosynthetic protein
  
• 3dzc.pdb. isomerase 29-jul-08 3dzc Cl Ca
  Title: 2.35 angstrom resolution structure of wecb (vc0917), a udp- n-acetylglucosamine 2-epimerase from vibrio cholerae.
  Author: g. minasov, l. shuvalova, i. dubrovska, j. winsor, l. papazisi, k. kwon, j. hasseman, s. n. peterson, w. f. anderson, center for structural genomics of infectious deseases (csgid)
  Keywords: structural genomics, infectious diseases, isomerase
  
• 3dzz.pdb. structural genomics, unknown function 30-jul-08 3dzz Cl Ca Se
  Title: crystal structure of putative pyridoxal 5'-phosphate- dependent c-s lyase (yp_813084.1) from lactobacillus delbrueckii bulgaricus atcc baa-365 at 1.61 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative pyridoxal 5'-phosphate-dependent c-s lyase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3e02.pdb. structural genomics, unknown function 30-jul-08 3e02 Zn Se
  Title: crystal structure of protein of unknown function (duf849) (yp_555544.1) from burkholderia xenovorans lb400 at 1.90 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: unknown function
  
• 3e04.pdb. lyase 30-jul-08 3e04
  Title: crystal structure of human fumarate hydratase
  Author: k. l. kavanagh, u. oppermann, structural genomics consortium (sgc)
  Keywords: sgc
  
• 3e05.pdb. transferase 30-jul-08 3e05 Cl
  Title: crystal structure of precorrin-6y c5,15-methyltransferase from geobacter metallireducens gs-15
  Author: y. patskovsky, u. a. ramagopal, r. toro, m. dickey, s. hu, m. maletic, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics
  
• 3e0z.pdb. structural genomics, unknown function 01-aug-08 3e0z Se
  Title: crystal structure of protein of unknown function (rer070207001348) from eubacterium rectale at 1.75 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: protein of unknown function, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, unknown function
  
• 3e10.pdb. oxidoreductase 01-aug-08 3e10 Se
  Title: crystal structure of putative nadh oxidase (np_348178.1) from clostridium acetobutylicum at 1.40 a resolution
  Author: joint center for structural genomics (jcsg)
  Keywords: putative nadh oxidase, structural genomics, joint center for structural genomics, jcsg, protein structure initiative, psi-2, nitroreductase family, oxidoreductase
  
• 3e18.pdb. oxidoreductase 02-aug-08 3e18 Cl Mg
  Title: crystal structure of nad-binding protein from listeria innocua
  Author: y. patskovsky, u. a. ramagopal, r. toro, m. rutter, s. hu, c. groshong, j. m. sauder, s. k. burley, s. c. almo, new york sgx research center for structural genomics (nysgxrc)
  Keywords: new york sgx research center for structural genomics
  
• 3e1k.pdb. transcription 04-aug-08 3e1k
  Title: crystal structure of kluyveromyces lactis gal80p in complex with the acidic activation domain of gal4p
  Author: j. b. thoden, h. m. holden
  Keywords: repressor, trans-activation, carbohydrate metabolism, dna-binding, galactose metabolism, transcription, transcription regulation, activator, metal- binding, nucleus, zinc
  
• 3e2b.pdb. transport protein 05-aug-08 3e2b
  Title: crystal structure of dynein light chain lc8 in complex with a peptide derived from swallow
  Author: g. benison, e. barbar, p. a. karplus
  Keywords: transport protein, cytoplasm, dynein, microtubule, motor protein