Recent PDB releases or updates: week of 9 January 2004

• 1fk9.pdb. transferase 09-aug-00 1fk9 Cl F
  Title: crystal structure of hiv-1 reverse transcriptase in complex with dmp-266(efavirenz)
  Author: j. ren, j. milton, k. l. weaver, s. a short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, dmp-266, efavirenz, drug design
  
• 1fko.pdb. transferase 10-aug-00 1fko Cl F
  Title: crystal structure of nnrti resistant k103n mutant hiv-1 reverse transcriptase in complex with dmp-266(efavirenz)
  Author: j. ren, j. milton, k. l. weaver, s. a. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, dmp-266, efavirenz, drug resistance mutation, drug design
  
• 1fkp.pdb. transferase 10-aug-00 1fkp
  Title: crystal structure of nnrti resistant k103n mutant hiv-1 reverse transcriptase in complex with nevirapine
  Author: j. ren, j. milton, k. l. weaver, s. a. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, nevirapine, drug resistance mutation, drug design
  
• 1g0u.pdb. hydrolase 09-oct-00 1g0u Mg
  Title: a gated channel into the proteasome core particle
  Author: m. groll, m. bajorek, a. kohler, l. moroder, d. m. rubin, r. huber, m. h. glickman, d. finley
  Keywords: ubiquitin, degradation, protease, ntn-hydrolase
  
• 1gp8.pdb. virus/viral protein 11-may-99 1gp8 (NMR, 35 structures)
  Title: nmr solution structure of the coat protein-binding domain of bacteriophage p22 scaffolding protein
  Author: y. sun, m. h. parker, p. weigele, s. casjens, p. e. prevelige jr. , n. r. krishna
  Keywords: coat protein-binding domain, helix- loop-helix motif
  
• 1jkh.pdb. transferase 12-jul-01 1jkh Cl F
  Title: crystal structure of y181c mutant hiv-1 reverse transcriptase in complex with dmp-266(efavirenz)
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, dmp-266, efavirenz, drug resistance mutations, drug design
  
• 1jla.pdb. transferase 16-jul-01 1jla
  Title: crystal structure of y181c mutant hiv-1 reverse transcriptase in complex with tnk-651
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, tnk-651, drug resistance mutations, drug design
  
• 1jlb.pdb. transferase 16-jul-01 1jlb
  Title: crystal structure of y181c mutant hiv-1 reverse transcriptase in complex with nevirapine
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, nevirapine, drug resistance mutations, drug design
  
• 1jlc.pdb. transferase 16-jul-01 1jlc Cl F
  Title: crystal structure of y181c mutant hiv-1 reverse transcriptase in complex with pett-2
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, pett-2, drug resistance mutations, drug design
  
• 1jle.pdb. transferase 16-jul-01 1jle
  Title: crystal structure of y188c mutant hiv-1 reverse transcriptase
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, drug resistance mutations, drug design
  
• 1jlf.pdb. transferase 16-jul-01 1jlf
  Title: crystal structure of y188c mutant hiv-1 reverse transcriptase in complex with nevirapine
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, nevirapine, drug resistance mutations, drug design
  
• 1jlg.pdb. transferase 16-jul-01 1jlg Cl
  Title: crystal structure of y188c mutant hiv-1 reverse transcriptase in complex with uc-781
  Author: j. ren, c. nichols, l. bird, p. chamberlain, k. weaver, s. short, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, uc-781, drug resistance mutations, drug design
  
• 1jlq.pdb. transferase 16-jul-01 1jlq
  Title: crystal structure of hiv-1 reverse transcriptase in complex with 739w94
  Author: j. ren, d. i. stuart, d. k. stammers
  Keywords: aids, non-nucleoside inhibitor, 739w94, drug design
  
• 1mrw.pdb. hydrolase 18-sep-02 1mrw
  Title: structure of hiv protease (mutant q7k l33i l63i) complexed with kni-577
  Author: s. vega, l. -w. kang, a. velzquez-campoy, y. kiso, l. m. amzel, e. freire
  Keywords: kni-577, protease, drug target
  
• 1mrx.pdb. hydrolase 18-sep-02 1mrx
  Title: structure of hiv protease (mutant q7k l33i l63i v82f i84v ) complexed with kni-577
  Author: s. vega, l. -w. kang, a. velzquez-campoy, y. kiso, l. m. amzel, e. freire
  Keywords: kni-577, protease, drug target
  
• 1msm.pdb. hydrolase 19-sep-02 1msm
  Title: the hiv protease (mutant q7k l33i l63i) complexed with kni- 764 (an inhibitor)
  Author: s. vega, l. -w. kang, a. velzquez-campoy, y. kiso, l. m. amzel, e. freire
  Keywords: kni-764, protease, drug target
  
• 1msn.pdb. hydrolase 19-sep-02 1msn
  Title: the hiv protease (mutant q7k l33i l63i v82f i84v) complexed with kni-764 (an inhibitor)
  Author: s. vega, l. -w. kang, a. velzquez-campoy, y. kiso, l. m. amzel, e. freire
  Keywords: kni-764, protease, drug target
  
• 1o87.pdb. protein transport 25-nov-02 1o87 Cl Mg
  Title: a new mggdp complex of the ffh ng domain
  Author: d. m. freymann
  Keywords: signal recognition particle,srp,gtpase, gtp-binding, rna-binding
  
• 1od6.pdb. transferase 13-feb-03 1od6
  Title: the crystal structure of phosphopantetheine adenylyltransferase from thermus thermophilus in complex with 4'-phosphopantetheine
  Author: h. takahashi, e. inagaki, m. miyano, t. tahirov
  Keywords: transferase, nucleotidyltransferase
  
• 1odo.pdb. oxidoreductase 19-feb-03 1odo Fe
  Title: 1.85 a structure of cyp154a1 from streptomyces coelicolor a3(2)
  Author: l. m. podust, y. kim, m. arase, h. bach, d. h. sherman, d. c. lamb, s. l. kelly, m. r. waterman
  Keywords: streptomyces, cytochrome, oxidoreductase
  
• 1ohv.pdb. transferase 02-jun-03 1ohv Fe
  Title: 4-aminobutyrate-aminotransferase from pig
  Author: p. storici, t. schirmer
  Keywords: plp-dependent enzyme, aminotransferase, 4-aminobutyric acid, antiepileptic drug target
  
• 1ohw.pdb. transferase 03-jun-03 1ohw Fe
  Title: 4-aminobutyrate-aminotransferase inactivated by gamma-vinyl gaba
  Author: p. storici, t. schirmer
  Keywords: plp-dependent enzyme, aminotransferase, 4-aminobutyric acid, antiepileptic drug target, vigabatrin pyridoxal phosphate, neurotransmitter degradation, mitochondrion, transit peptide
  
• 1ohy.pdb. transferase 03-jun-03 1ohy Fe
  Title: 4-aminobutyrate-aminotransferase inactivated by gamma-ethynyl gaba
  Author: p. storici, t. schirmer
  Keywords: plp-dependent enzyme, aminotransferase, 4-aminobutyric acid, antiepileptic drug target, vigabatrin pyridoxal phosphate, neurotransmitter degradation, mitochondrion, transit peptide
  
• 1q11.pdb. ligase 18-jul-03 1q11 K
  Title: crystal structure of an active fragment of human tyrosyl- trna synthetase with tyrosinol
  Author: x. -l. yang, p. schimmel, l. ribas de pouplana
  Keywords: anticodon recognition domain, substrate analog tyrosinol co- crystalized
  
• 1q4g.pdb. oxidoreductase 03-aug-03 1q4g Fe
  Title: 2.0 angstrom crystal structure of ovine prostaglandin h2 synthase-1, in complex with alpha-methyl-4-biphenylacetic acid
  Author: k. gupta, b. s. selinksy, c. j. kaub, a. k. katz, p. j. loll
  Keywords: non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, egf-like domain, membrane binding domain
  
• 1q5i.pdb. membrane protein 07-aug-03 1q5i
  Title: crystal structure of bacteriorhodopsin mutant p186a crystallized from bicelles
  Author: s. yohannan, s. faham, d. yang, j. p. whitelegge, j. u. bowie
  Keywords: membrane protein
  
• 1q5j.pdb. membrane protein 07-aug-03 1q5j
  Title: crystal structure of bacteriorhodopsin mutant p91a crystallized from bicelles
  Author: s. yohannan, s. faham, d. yang, j. p. whitelegge, j. u. bowie
  Keywords: membrane protein
  
• 1q8r.pdb. recombination,hydrolase 22-aug-03 1q8r
  Title: structure of e.coli rusa holliday junction resolvase
  Author: j. b. rafferty, e. l. bolt, t. a. muranova, s. e. sedelnikova, p. leonard, a. pasquo, p. j. baker, d. w. rice, g. j. sharples, r. g. lloyd
  Keywords: chorismate mutase-like fold
  
• 1qzv.pdb. photosynthesis 18-sep-03 1qzv Mg Fe
  Title: crystal structure of plant photosystem i
  Author: a. ben-shem, f. frolow, n. nelson
  Keywords: plant photosynthetic reaction center, peripheral antenna, light-harvesting system, plant membrane protein complex
  
• 1r2y.pdb. hydrolase/dna 30-sep-03 1r2y Zn
  Title: mutm (fpg) bound to 8-oxoguanine (oxog) containing dna
  Author: j. c. fromme, g. l. verdine
  Keywords: dna glycosylase
  
• 1r2z.pdb. hydrolase/dna 30-sep-03 1r2z Zn
  Title: mutm (fpg) bound to 5,6-dihydrouracil (dhu) containing dna
  Author: j. c. fromme, g. l. verdine
  Keywords: dna glycosylase
  
• 1r6t.pdb. ligase 16-oct-03 1r6t Se
  Title: crystal structure of human tryptophanyl-trna synthetase
  Author: x. -l. yang, f. j. otero, r. j. skene, d. e. mcree, l. ribas de pouplana, p. schimmel
  Keywords: rossmann fold catalytical domain, anticodon recognition domain, bound trp-amp
  
• 1r6u.pdb. ligase 16-oct-03 1r6u Se
  Title: crystal structure of an active fragment of human tryptophanyl-trna synthetase with cytokine activity
  Author: x. -l. yang, f. j. otero, r. j. skene, d. e. mcree, l. ribas de pouplana, p. schimmel
  Keywords: rossmann fold catalytic domain, anticodon recognition domain, bound trp-amp
  
• 1r8i.pdb. structural protein 24-oct-03 1r8i
  Title: crystal structure of trac
  Author: h. -j. yeo, q. yuan, m. r. beck, c. baron, g. waksman
  Keywords: virb5, helical bundle
  
• 1rh5.pdb. proton transport 13-nov-03 1rh5
  Title: the structure of a protein conducting channel
  Author: b. van den berg, w. m. clemons jr. , i. collinson, y. modis, e. hartmann, s. c. harrison, t. a. rapoport
  Keywords: secy, membrane protein, protein channels
  
• 1rhz.pdb. protein transport 15-nov-03 1rhz
  Title: the structure of a protein conducting channel
  Author: b. van den berg, w. m. clemons jr. , i. collinson, y. modis, e. hartmann, s. c. harrison, t. a. rapoport
  Keywords: secy, membrane protein, protein channels
  
• 1rle.pdb. transferase 25-nov-03 1rle Mg Ca
  Title: structural basis for the coordinated regulation of transglutaminase 3 by guanine nucleotides and calcium/magnesium
  Author: b. ahvazi
  Keywords: x-ray crystallography, metalloenzyme, calcium ion
  
• 1rll.pdb. transferase 25-nov-03 1rll Mg Ca
  Title: structural basis for the coordinated regulation of transglutaminase 3 by guanine nucleotides and calcium/magnesium
  Author: b. ahvazi
  Keywords: x-ray crystallography, metalloenzyme, calcium ion
  
• 1rym.pdb. translation 22-dec-03 1rym
  Title: structure of the group ii intron splicing factor crs2
  Author: g. j. ostheimer, a. barkan, b. w. matthews
  
  
• 1ryn.pdb. translation 22-dec-03 1ryn
  Title: structure of the chloroplast group ii intron splicing factor crs2
  Author: g. j. ostheimer, a. barkan, b. w. matthews
  
  
• 1uo6.pdb. hydrolase 16-sep-03 1uo6 Cl Na Xe
  Title: porcine pancreatic elastase/xe-complex
  Author: c. mueller-dieckmann, m. polentarutti, k. djinovic-carugo, s. panjikar, p. a. tucker, m. s. weiss
  Keywords: chymotrypsin-fold, beta-barrel, xenon binding
  
• 1uos.pdb. lectin 22-sep-03 1uos
  Title: the crystal structure of the snake venom toxin convulxin
  Author: t. batuwangala, m. leduc, j. m. gibbins, c. bon, e. y. jones
  Keywords: c-type lectin, snake toxin, gpvi
  
• 1uq4.pdb. hydrolase 15-oct-03 1uq4
  Title: ricin a-chain (recombinant) r248d mutant
  Author: c. j. marsden, v. fulop
  Keywords: glycosidase, toxin, glycoprotein
  
• 1uq5.pdb. hydrolase 15-oct-03 1uq5
  Title: ricin a-chain (recombinant) n122a mutant
  Author: c. j. marsden, v. fulop
  Keywords: glycosidase, toxin, glycoprotein
  
• 1us8.pdb. dna repair 20-nov-03 1us8
  Title: the rad50 signature motif: essential to atp binding and biological function
  Author: g. moncalian, b. lengsfeld, v. bhaskara, k. p. hopfner, a. karcher, e. alden, j. a. tainer, t. t. paull
  Keywords: abc atpase, signature motif
  
• 1usl.pdb. isomerase 25-nov-03 1usl
  Title: structure of mycobacterium tuberculosis ribose-5-phosphate isomerase, rpib, rv2465c, complexed with phosphate.
  Author: a. k. roos, c. e. andersson, t. unge, t. a. jones, s. l. mowbray
  Keywords: phosphopentose isomerase b, pentose phosphate pathway, rv2465c, phosphoriboisomerase b
  
• 1usr.pdb. hydrolase 28-nov-03 1usr Ca
  Title: newcastle disease virus hemagglutinin-neuraminidase: evidence for a second sialic acid binding site and implications for fusion
  Author: v. zaitsev, m. itzstein, d. groves, m. kiefel, t. takimotu, a. portner, g. taylor
  Keywords: neuraminidase, hemagglutinin-neuraminidase, hemagglutinin, glycoprotein
  
• 2gp8.pdb. virus/viral protein 11-may-99 2gp8 (NMR, minimized average structure)
  Title: nmr solution structure of the coat protein-binding domain of bacteriophage p22 scaffolding protein
  Author: y. sun, m. h. parker, p. weigele, s. casjens, p. e. prevelige jr. , n. r. krishna
  Keywords: coat protein-binding domain, helix- loop-helix motif