Scientists of the Scripps Research Institute are involved in a number of scientific consortia. Each consortium brings together the knowledge, resources, and expertise of a number of research institutes and organizations to pursue a specific line of scientific inquiry. By collaborating with other institutes, each member of a consortium is better able to leverage its resources to advance scientific knowledge.
| Consortia | Website |
| Consortium for Functional Glycomics | http://www.functionalglycomics.org/ |
| Integrated Neuroscience Initiative on Alcoholism | http://www.scripps.edu/cnad/inia/ |
| Joint Center for Structural Genomics | http://www.jcsg.org/ |
| Sanford Consortium for Regenerative Medicine | http://www.sanfordconsortium.org/ |