Index
A
B
C
D
E
F
H
L
M
N
O
P
R
S
T
V
W
Z
A
- additional reading vi
- annotation 17
- assignments, displaying 35
B
- back-calculated spectrum, plotting 160
- baseline correction 5, 11, 12
- Blake 59, 165
C
- Chemical Shift Index, calculating 110
- clipboard list, copying to a pattern 75
- contour level
- calculating 54
- raising 54
- contour plot 28
- creating 63
- updating 57
- viewing 55
- coordinates, redefining 105
- cross peak footprints
- using database to list 218
- cross peaks
- assigning 34
- finding 162, 163
D
- D2 dimension, transforming 51
- data matrices, for Assign tutorials 59
- database
- checking file structure 218
- creating a new file 217
- generating 2D cross peaks 217
- heirarchy 216
- modifying schema 220
- passing data into and out of 221
- querying for entity information 218
- reading in 101
- selecting 7
- setting up 61, 140, 167
- submitting a query 78
- using to change the value of an element 220
- using to load the value of an element 220
- utilities tutorial 215
- viewing entity contents 218
- viewing entity with tables 222
- writing from 105
- DC offset, removing 3
- display parameters, changing 114
- display, adjusting 158
- DQF-COSY spectra 165
E
- entities, building 61
- experiments
- adding to project 141
- defining new 62
F
- FID
- apodizing 21
- reading in 21
- transforming 22
- frames, creating 8
- frequencies
- assigning 79
- displaying 73, 176
- editing 80
- frequency collapse tolerance 69
H
- heteronuclear NOE's, evaluating 44
L
- library
- accessing and defining 61
- defining 140
M
- matrix
- displaying 27
- opening 27, 157
- referencing 28
- two-dimensional 20
- Modelfree input, generating 45
N
- neighbor detection, verifying result 92
- neighbor searches, performing 133
- NMR spectrum assignment 59
- NOE peaks, checking 95
- NOESY spectrum, back-calculating 158
O
- one-dimensional data processing 2
- advanced 6
P
- patterns
- connecting 90
- matching against known AA sequence 93
- scoring 129
- peak assignments, generating automatically 97
- peak heights, measuring 38
- peak picking 31
- in assignment procedure 66
- peaks
- coloring based on prototype patterns 125
- deleting 32
- listing 33
- reading in 67, 118, 144
- phasing adjustment 4
- plot
- contour 28
- stacked 31
- project
- adding experiments to 113
- protons, finding corresponding crosspeaks to 163
- prototype pattern
- collecting 69
- copying directly to a spin system 89
- copying to a spin system 149
- copying to clipboard 74, 177
- correcting 147
- creating tile plot 73, 176
- detection 120, 145
- visualizing 124, 146
- writing collection to file 72, 175
R
- real-time interface, accessing 161
- related books vi
- resonances, viewing and examining 15
- restraints
- defining and generating 104
- redefining 108
S
- scalar peak, assigning 103
- scaling peak, choosing 159
- sequence-specific assignments
- creating 151
- generating 135, 137
- sequential assignment, visualizing 137
- sequential connectivities 90
- signal/noise ratio, evaluating 40
- slices, plotting 56
- spectra
- comparing 160
- connecting 147
- creating 9
- drawing 66, 174
- magnifying display of 158
- phase correcting 22
- phasing 10
- replotting 162
- selecting 120, 145
- spectrum-specific shifts
- adjusting 80
- setting 131
- spectrum-specific tolerances 64
- spin system, adding to patterns 129
- spreadsheet, viewing entity with 62, 167
- stacked plot 31
- stretches, using in assignment 152
- strip plots, using 73, 176
T
- 3D peak picking 56
- 3D viewing 55
- three-dimensional data, transforming 47
- threshold, adjusting 157
- time course, viewing 41
- TOCSY
- spectra 165
- transforming data 10
- 2D cross peaks, using database to generate 217
- 2D data, processing 23
- typographical conventions vi
V
- volumes, calculating 36
W
- workstation requirements vi
Z
- Zn-rubredoxin 165
Index
Last updated January 28, 2000 at 12:14PM Pacific Standard Time.
Copyright © 2000, Molecular Simulations Inc. All rights
reserved.