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Department of Molecular and Experimental Medicine

During the last two decades, scientists have begun to understand the molecular basis of disease in terms of malfunctioning protein and nucleic acid molecules. This has resulted in new therapies, in particular, small molecule drugs that are specifically directed at correcting the malfunctioning molecules. However, long before such drugs can be designed, specific questions need to be answered for each disease:

Where are the malfunctioning molecules? What are their structures? How do they operate? Can we make drugs to influence them? If so, how do the drugs and the targets interact?

These questions bring together the disciplines of structural biology, cellular biology, catalysis, organic synthesis, and molecular recognitionÜthe range of disciplines investigated by researchers in the Department of Molecular and Experimental Medicine (MEM). With a staff of 50 scientists, the department encompasses a wide range of specialties and interests.

Since it was formed in the early 1980s, the department has occupied a position at the interface of clinical and basic research. Uniting the department is the quest to understand the mechanisms of diseases and to devise strategies to improve health.

Though a number of its members have significant clinical experience, MEM is not a clinical department per se. Even so, MEM faculty are particularly interested in the clinical applications of their work.

One example is MEM's Division of Experimental Pathology, which tackles hepatitis B, a serious disease caused by a virus that attacks the liver. More than 350 million people worldwide, including 1.25 million Americans, suffer from the disease. Hepatitis B is the leading cause of liver damage and claims more than a million lives a year worldwide.

The department has become a world leader in the study of hepatitis, especially of the body's immune response to the disease. The division studies the immunobiology and pathogenesis of hepatitis B and related viruses in transgenic models and in infected patients.

The Division of Experimental Hemostasis and Thrombosis is attempting to understand blood clots such as those that cause cardiovascular disease, particularly heart attacks and stroke. One lab conducts basic research to address the main disease-causing mechanisms responsible for arterial and venous thrombosis, the clotting of veins and arteries, and is laying the foundation for novel and more efficient therapeutic approaches. The investigators study the interaction between vessels and blood platelets, which are cell fragments that carry the chemicals the body uses in hemostasis, the process by which blood clots at a site of injury. They are particularly interested in the structures of the adhesion proteins that mediate the formation of blood clots and the receptors on the platelets, and they have been solving the structures of these interacting molecules and piecing together how they work.

Such detailed knowledge of the three-dimensional structure of these adhesive proteins is indispensable for understanding the differences between normal hemostasis, where bleeding is stopped after a cut, and pathological thrombosis, in which a clot of platelets occludes blood flow and causes cardiovascular disease.

Another serious disease, arthritis, is also of interest in the department. Osteoarthritis is the most common form of the disease and arises from the degeneration of cartilage in joints. The Division of Arthritis Research studies cartilage and investigates how one can influence its growth.

Joint trauma, for instance, is a known risk factor for osteoarthritis, but there are no pharmaceuticals to limit this tissue damage. Using models of cartilage injury, investigators have found that apoptosis, or programmed cell death, can be induced by mechanical stress in joints, and they are testing inhibitors to see whether these can slow progress to osteoarthritis. The division is also looking at the stimulation of cartilage damage by chemical signals released by immune system cells and investigating whether blocking these signals represents a viable approach to preventing osteoarthritis.

In another line of research with clinical implications, the Division of Hematology has collaborated with Kaiser Permanente on the largest DNA study in history. This epidemiological study examined the DNA and clinical data of some 41,000 patients for genetic susceptibility to a disorder known as hereditary hemochromatosis. Hemochromatosis is a metabolic disorder in which excess deposits of iron occur in the liver, pancreas, and other organs. Among other manifestations, cirrhosis of the liver, diabetes, and cardiovascular disease may result.

Although it was originally thought that most people with the mutation that causes hemochromatosis were symptomatic and suffered a high mortality rate if not treated, the results of the study show clearly that few individuals who are genetically predisposed manifest the disease. Most who are homozygous for this genetic mutation seem to enjoy a normal life span. This study may lead to a rethinking of the costs and benefits of screening normal populations for this disease and of the importance of its early treatment.

MEM also has a basic research division in oncovirology, which seeks to understand the mechanisms by which genetic changes in growth; regulatory genes lead to the development of cancer; to investigate signals that control protein synthesis, signals that control gene expression; to research how other signals cause cancer; and to apply this knowledge in the development of novel anti-cancer therapies.

Other divisions within MEM include Biochemistry, Biomathematics, Cellular Biology, and Research Rheumatology.

Investigators in the department are also participants in the Scripps Cancer Center with physicians from Scripps Clinic and the ScrippsHealth system, institutions that together treat 25 to 30 percent of all the cancer patients in the San Diego area. The cancer center's goal is to facilitate the development of new cancer drugs from their beginnings in the laboratory to their final approval for use by cancer patients. This program will enable researchers to contribute more directly to the solutions they seek by moving potentially useful laboratory findings into the clinic through their close collaboration with clinical staff.

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