LOCUS       pC34N       10508 bp    DNA   circular             1-OCT-2004
SOURCE      
  ORGANISM  
COMMENT     This file is created by Vector NTI
            http://www.informaxinc.com/
COMMENT     ORIGDB|GenBank
COMMENT     VNTDATE|233512100|
COMMENT     VNTDBDATE|351273842|
COMMENT     VNTNAME|pC34N|
COMMENT     VNTAUTHORNAME|David J. Looney, M.D.|
COMMENT     VNTAUTHORTEL|858-552-8585x2626|
COMMENT     VNTAUTHORFAX|858-52-7416|
COMMENT     VNTAUTHOREML|dlooney@ucsd.edu|
COMMENT     VNTAUTHORAD1|Dept. of Medicine 0678|
COMMENT     VNTAUTHORAD2|University of California San Diego|
COMMENT     VNTAUTHORAD3|Stein Clinical Research Bldg Room 302|
COMMENT     VNTAUTHORAD4|La Jolla, CA 92093-0678 USA|
FEATURES             Location/Qualifiers
     splicing_signal 6297..6298
                     /vntifkey="38"
                     /label=rev\SA
     splicing_signal 6541..6542
                     /vntifkey="38"
                     /label=rev\SD
     CDS             6300..6540
                     /vntifkey="4"
                     /label=Rev1
     CDS             7420..7635
                     /vntifkey="4"
                     /label=Rev2
     splicing_signal 7419..7420
                     /vntifkey="38"
                     /label=rev\SA
     misc_feature    7251..7392
                     /vntifkey="21"
                     /label=RRE
     splicing_signal 5225..5226
                     /vntifkey="38"
                     /label=vif\SA
     splicing_signal 5955..5956
                     /vntifkey="38"
                     /label=orf2\SA
     promoter        17..535
                     /vntifkey="29"
                     /label=CMV-I/E
BASE COUNT     3613 a      1826 c      2435 g      2634 t 
ORIGIN
        1 aattcgagct tgcatgcctg caggtcgtta cataacttac ggtaaatggc ccgcctggct 
       61 gaccgcccaa cgacccccgc ccattgacgt caataatgac gtatgttccc atagtaacgc 
      121 caatagggac tttccattga cgtcaatggg tggagtattt acggtaaact gcccacttgg 
      181 cagtacatca agtgtatcat atgccaagta cgccccctat tgacgtcaat gacggtaaat 
      241 ggcccgcctg gcattatgcc cagtacatga ccttatggga ctttcctact tggcagtaca 
      301 tctacgtatt agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc 
      361 gtggatagcg gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga 
      421 gtttgttttg gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat 
      481 tgacgcaaat gggcggtagg cgtgtacggt gggaggtcta tataagcaga gctcgtttag 
      541 tgaaccgtca gatcgcctgg agacgccatc cacgctgttt tgacctccat agaagacacc 
      601 gggaccgatc cagcctccgg actctagagg atccggtact cgacgacgtc aacaaggtag 
      661 gaatggggaa tggacagggg cgagattgga aaatggccat taagagatgt agtaatgttg 
      721 ctgtaggagt aggggggaag agtaaaaaat ttggagaagg gaatttcaga tgggccatta 
      781 gaatggctaa tgtatctaca ggacgagaac ctggtgatat accagagact ttagatcaac 
      841 taaggttggt tatttgcgat ttacaagaaa gaagagaaaa atttggatct agcaaagaaa 
      901 ttgatatggc aattgtgaca ttaaaagtct ttgcggtagc aggactttta aatatgacgg 
      961 tgtctactgc tgctgcagct gaaaatatgt attctcaaat gggattagac actaggccat 
     1021 ctatgaaaga agcaggtgga aaagaggaag gccctccaca ggcatatcct attcaaacag 
     1081 taaatggagt accacaatat gtagcacttg acccaaaaat ggtgtccatt tttatggaaa 
     1141 aggcaagaga aggactagga ggtgaggaag ttcaactatg gtttactgcc ttctctgcaa 
     1201 atttaacacc tactgacatg gccacattaa taatggccgc accagggtgc gctgcagata 
     1261 aagaaatatt ggatgaaagc ttaaagcaac tgacagcaga atatgatcgc acacatcccc 
     1321 ctgatgctcc cagaccatta ccctatttta ctgcagcaga aattatgggt ataggattaa 
     1381 ctcaagaaca acaagcagaa gcaagatttg caccagctag gatgcagtgt agagcatggt 
     1441 atctcgaggc attaggaaaa ttggctgcca taaaagctaa gtctcctcga gctgtgcagt 
     1501 taagacaagg agctaaggaa gattattcat cctttataga cagattgttt gcccaaatag 
     1561 atcaagaaca aaatacagct gaagttaagt tatatttaaa acagtcatta agcatagcta 
     1621 atgctaatgc agactgtaaa aaggcaatga gccaccttaa gccagaaagt accctagaag 
     1681 aaaagttgag agcttgtcaa gaaataggct caccaggata taaaatgcaa ctcttggcag 
     1741 aagctcttac aaaagttcaa gtagtgcaat caaaaggatc aggaccagtg tgttttaatt 
     1801 gtaaaaaacc aggacatcta gcaagacaat gtagagaagt gaaaaaatgt aataaatgtg 
     1861 gaaaacctgg tcatgtagct gccaaatgtt ggcaaggaaa tagaaagaat tcgggaaact 
     1921 ggaaggcggg gcgagctgca gccccagtga atcaaatgca gcaagcagta atgccatctg 
     1981 cacctccaat ggaggagaaa ctattggatt tgtaaattat aataaagtag gtactactac 
     2041 aacattagaa aagaggccag aaatacttat atttgtaaat ggatatccta taaaattttt 
     2101 attagacaca ggagcagata taacaatttt aaataggaga gattttcaag taaaaaattc 
     2161 tatagaaaat ggaaggcaaa atatgattgg agtaggagga ggaaagagag gaacaaatta 
     2221 tattaatgta catttagaga ttagagatga aaattataag acgcaatgta tatttggtaa 
     2281 tgtttgtgtc ttagaagata actcattaat acaaccatta ttagggagag ataatatgat 
     2341 taaattcaat attaggttag taatggctca aatttctgat aagattccag tagtaaaagt 
     2401 aaaaatgaag gatcctaata aaggacctca aataaaacaa tggccattaa caaatgaaaa 
     2461 aattgaagcc ttaacagaaa tagtagaaag actagaaaaa gaagggaaag taaaaagagc 
     2521 agattcaaat aatccatgga atacaccagt atttgctata aaaaagaaaa gtggaaaatg 
     2581 gagaatgctc atagatttta gagaattaaa caaattaact gagaaaggag cagaggtcca 
     2641 gttgggacta cctcatcctg ctggtctaca aataaaaaaa caagtaacag tattagatat 
     2701 aggggatgca tatttcacca ttcctcttga tccagattat gctccttata cagcatttac 
     2761 tttacctagg aaaaataatg cgggaccagg aaggagattt gtgtggtgta gtctaccaca 
     2821 aggctggatt ttaagtccat tgatatatca aagtacatta gataatataa tacaaccttt 
     2881 tattagacaa aatcctcaat tagatattta ccaatatatg gatgacattt atataggatc 
     2941 aaatttaagt aaaaaggagc ataaagaaaa ggtagaagaa ttaagaaaat tactattatg 
     3001 gtggggattt gaaactccag aagataaatt acaggaagaa cccccatata catggatggg 
     3061 ttatgaatta catccattaa catggacaat acaacagaaa cagttagaca ttccagaaca 
     3121 gcccactcta aatgagttgc aaaaattagc aggaaaaatt aattgggcta gccaagctat 
     3181 tccagacttg agtataaaag cattaactaa catgatgaga ggaaatcaaa acctaaattc 
     3241 aacaagacaa tggactaaag aagctcgact ggaagtacaa aaggcaaaaa aggctataga 
     3301 agaacaagta caactaggat actatgaccc cagtaaggag ttatatgcta aattaagttt 
     3361 ggtgggacca catcaaataa gttatcaagt atatcagaag gatccagaaa agatactatg 
     3421 gtatggaaaa atgagtagac aaaagaaaaa ggcagaaaat acatgtgata tagccttaag 
     3481 agcatgctat aagataagag aagagtctat tataagaata ggaaaagaac caagatatga 
     3541 aatacctact tctagagaag cctgggaatc aaatttaatt aattcaccat atcttaaggc 
     3601 cccacctcct gaggtagaat atatccatgc tgctttgaat ataaagagag cgttaagtat 
     3661 gataaaagat gctccaatac caggagcaga aacatggtat atagatggag gtagaaagct 
     3721 aggaaaagca gcaaaagcag cctattggac agatacagga aagtggcgag tgatggattt 
     3781 agaaggcagt aatcagaagg cagaaataca agcattatta ttggcattaa aagcaggatc 
     3841 agaggaaatg aatattataa cagattcaca atatgttata aatattattc ttcaacaacc 
     3901 agatatgatg gagggaatct ggcaagaagt tttagaagaa ttggagaaga aaacagcaat 
     3961 atttatagat tgggtcccag gacataaagg tattccagga aatgaggaag tagataagct 
     4021 ttgtcaaaca atgatgataa tagaagggga tgggatatta gataaaaggt cagaagatgc 
     4081 aggatatgat ttattagctg caaaagaaat acatttattg ccaggagagg taaaagtaat 
     4141 accaacaggg gtaaagctaa tgttgcctaa aggatattgg ggattaataa taggaaaaag 
     4201 ctcgataggg agtaaaggat tggatgtatt aggaggagta atagatgaag gatatcgagg 
     4261 tgaaattgga gtaataatga ttaatgtatc aagaaaatca atcactttaa tggaacgaca 
     4321 aaagatagca caattaataa tattgccttg taaacatgaa gtattagaac aaggaaaagt 
     4381 agtaatggat tcagagagag gagacaatgg ttatgggtca acaggagtat tctcctcttg 
     4441 ggttgacaga attgaggaag cagaaataaa tcatgaaaaa tttcactcag atccacagta 
     4501 cttaaggact gaatttaatt tacctaagat ggtagcagaa gagataagac gaaaatgccc 
     4561 agtatgcaga atcagaggag aacaagtggg aggacaattg aaaatagggc ctggtatctg 
     4621 gcaaatggat tgcacacact ttgatggcaa aataattctt gtgggtatac atgtggaatc 
     4681 aggatatata tgggcacaaa taatttctca agaaactgct gactgtacag ttaaagctgt 
     4741 tttacaattg ttgagtgctc ataatgttac tgaattacaa acagataatg gaccaaattt 
     4801 taaaaatcaa aagatggaag gagtactcaa ttacatgggt gtgaaacata agtttggtat 
     4861 cccagggaac ccacagtcac aagcattagt tgaaaatgta aatcatacat taaaagtttg 
     4921 gattcagaaa tttttgcctg aaacaacctc cttggataat gccttatctc tcgctgtaca 
     4981 tagtctcaat tttaaaagaa gaggtaggat aggagggatg gccccttatg aattattagc 
     5041 acaacaagaa tccttaagaa tacaagatta tttttctgca ataccacaaa aattgcaagc 
     5101 acagtggatt tattataaag atcaaaaaga taagaaatgg aaaggaccaa tgagagtaga 
     5161 atactgggga cagggatcag tattattaaa ggatgaagag aagggatatt ttcttatacc 
     5221 taggagacac ataaggagag ttccagaacc ctgcgctctt cctgaagggg atgagtgaag 
     5281 aagattggca ggtaagtaga agactctttg cagtgctcca aggaggagta aatagcgcta 
     5341 tgctatacat atctaggcta cctccgaatg aaagagaaaa gtataaaaaa gacttcaaga 
     5401 aaagactttt tgacacagaa acaggattta taaagagact acggaaagct gaaggaataa 
     5461 aatggagctt tcatactaga gattattaca taggatatgt cagagaaatg gtggcaggat 
     5521 ccactacatc actaagtcta aggatgtata tatatataag taacccacta tggcattctc 
     5581 agtatcgtcc aggcttgaaa aatttcaata aggaatggcc ttttgtaaat atgtggataa 
     5641 aaacaggatt tatgtgggat gatattgaaa aacaaaatat ttgtatagga ggagaagttt 
     5701 caccaggatg gggaccaggg atggtaggta tagcaataaa agcttttagt tgtggcgaaa 
     5761 gaaagattga ggctactcct gtaatgatta taagaggaga aatagatcca aaaaaatggt 
     5821 gcggagattg ttggaattta atgtgtctta gaaactcacc tccaaagact ttacaaagac 
     5881 tcgctatgtt ggcgtgtggc gtgccggcta agaagtggcg aggatgctgt aatcaacgct 
     5941 ttgtttctcc ttacagaacg cctgctgatt tagaggtcat tcaatccaag cccagctgga 
     6001 acctgttatg gtcgggagaa ctatgaatgg aagaaataat agtattattc aatagggtca 
     6061 ctgagaaact agaaaaagaa ttagctatca gaatatttgt attagcacat caattagaaa 
     6121 gggacaaagc tattagatta ctacaaggat tattttgaag atatagattt aagaaacccc 
     6181 gagcagatta ttgtttatgt tggtggtgtt gcagattcta ttattggcag ttgcaatcta 
     6241 cattatcaat aactactgct tagaaatatt tatattaatt ttcatttgca acaataagaa 
     6301 tggcagaagg atttgcagcc aatagacaat ggataggacc agaagaagct gaagagttat 
     6361 tagattttga tatagcaaca caaatgagtg aagaaggacc actaaatcca ggagtaaacc 
     6421 catttagggt acctggaata acagaaaaag aaaagcaaaa ctattgtaac atattacaac 
     6481 ctaagttaca agatctaagg aacgaaattc aagaggtaaa actggaagaa ggaaatgcag 
     6541 gtaagtttag aagagcaaga tttttaaggt attctgatga acgtgtattg tccctggttc 
     6601 atgcgttcat aggatattgt atatatttag gtaatcgaaa taagttagga tctttaagac 
     6661 atgacattga tatagaagca ccccaagaag agtgttataa taatagagag aagggtacaa 
     6721 ctgacaatat aaaatatggt agacgatgtt gcctagtaat aggattaaaa gtagaagcta 
     6781 tggaaaaatt tttatataca gctttcgcta tgcaagaatt aggatgtaat caaaatcaat 
     6841 tcttctgcaa aatccctctt gagttgtgga caaggtataa tatgactata aatcaaacaa 
     6901 tatggaatca tgaacatata actttggggg aatggtataa ccaaacaaaa gatttacaac 
     6961 aaaagtttta tgaaataata atggacatag aacaaaataa tgtacaaggg aagaaaggga 
     7021 tacaacaatt acaaaagtgg gaagattggg taagatggat aggaaatatt ccacaatatt 
     7081 taaagggact attgggaggt atcttgggaa taggattagg agtgttatta ttgattttat 
     7141 gtttacctac attggttgat tgtataagaa attgtatcca caagatacta ggatacacag 
     7201 taattgcaat gcctgaagta gaaggagaag aaatacaacc acaaatggaa ttgaggagaa 
     7261 atggtaggca atgtggcatg tctgaaaaag aggaggaatg atgaagtatc tcagacttat 
     7321 tttataaggg agatactgtg ctgagttctt ccctttgagg aaggtatgtc atatgaatcc 
     7381 atttcgaatc aaatcaaact aataaagtat gtattgtaag gtaaaaggaa aagacaaaga 
     7441 agaagaagaa agaagaaagc cttcaagagg atgatgacag agttagaaga tcgcttcagg 
     7501 aagctatttg gcacgacttc tacaacggga gacagcacag tagattctga agatgaacct 
     7561 cctaaaaaag aaaaaagggt ggactgggat gagtactgga accctgaaga aatagaaaga 
     7621 atgcttatgg actagcggcc gcggggatcc agacatgata agatacattg atgagtttgg 
     7681 acaaaccaca actagaatgc agtgaaaaaa atgctttatt tgtgaaattt gtgatgctat 
     7741 tgctttattt gtaaccatta taagctgcaa taaacaagtt aacaacaaca attgcattca 
     7801 ttttatgttt caggttcagg gggaggtgtg ggaggttttt tcggatcctc tagagtcgac 
     7861 ctgcaggcat gcaagcttgg cgtaatcatg gtcatagctg tttcctgtgt gaaattgtta 
     7921 tccgctcaca attccacaca acatacgagc cggaagcata aagtgtaaag cctggggtgc 
     7981 ctaatgagtg agctaactca cattaattgc gttgcgctca ctgcccgctt tccagtcggg 
     8041 aaacctgtcg tgccagctgc attaatgaat cggccaacgc gcggggagag gcggtttgcg 
     8101 tattgggcgc tcttccgctt cctcgctcac tgactcgctg cgctcggtcg ttcggctgcg 
     8161 gcgagcggta tcagctcact caaaggcggt aatacggtta tccacagaat caggggataa 
     8221 cgcaggaaag aacatgtgag caaaaggcca gcaaaaggcc aggaaccgta aaaaggccgc 
     8281 gttgctggcg tttttccata ggctccgccc ccctgacgag catcacaaaa atcgacgctc 
     8341 aagtcagagg tggcgaaacc cgacaggact ataaagatac caggcgtttc cccctggaag 
     8401 ctccctcgtg cgctctcctg ttccgaccct gccgcttacc ggatacctgt ccgcctttct 
     8461 cccttcggga agcgtggcgc tttctcatag ctcacgctgt aggtatctca gttcggtgta 
     8521 ggtcgttcgc tccaagctgg gctgtgtgca cgaacccccc gttcagcccg accgctgcgc 
     8581 cttatccggt aactatcgtc ttgagtccaa cccggtaaga cacgacttat cgccactggc 
     8641 agcagccact ggtaacagga ttagcagagc gaggtatgta ggcggtgcta cagagttctt 
     8701 gaagtggtgg cctaactacg gctacactag aaggacagta tttggtatct gcgctctgct 
     8761 gaagccagtt accttcggaa aaagagttgg tagctcttga tccggcaaac aaaccaccgc 
     8821 tggtagcggt ggtttttttg tttgcaagca gcagattacg cgcagaaaaa aaggatctca 
     8881 agaagatcct ttgatctttt ctacggggtc tgacgctcag tggaacgaaa actcacgtta 
     8941 agggattttg gtcatgagat tatcaaaaag gatcttcacc tagatccttt taaattaaaa 
     9001 atgaagtttt aaatcaatct aaagtatata tgagtaaact tggtctgaca gttaccaatg 
     9061 cttaatcagt gaggcaccta tctcagcgat ctgtctattt cgttcatcca tagttgcctg 
     9121 actccccgtc gtgtagataa ctacgatacg ggagggctta ccatctggcc ccagtgctgc 
     9181 aatgataccg cgagacccac gctcaccggc tccagattta tcagcaataa accagccagc 
     9241 cggaagggcc gagcgcagaa gtggtcctgc aactttatcc gcctccatcc agtctattaa 
     9301 ttgttgccgg gaagctagag taagtagttc gccagttaat agtttgcgca acgttgttgc 
     9361 cattgctaca ggcatcgtgg tgtcacgctc gtcgtttggt atggcttcat tcagctccgg 
     9421 ttcccaacga tcaaggcgag ttacatgatc ccccatgttg tgcaaaaaag cggttagctc 
     9481 cttcggtcct ccgatcgttg tcagaagtaa gttggccgca gtgttatcac tcatggttat 
     9541 ggcagcactg cataattctc ttactgtcat gccatccgta agatgctttt ctgtgactgg 
     9601 tgagtactca accaagtcat tctgagaata gtgtatgcgg cgaccgagtt gctcttgccc 
     9661 ggcgtcaata cgggataata ccgcgccaca tagcagaact ttaaaagtgc tcatcattgg 
     9721 aaaacgttct tcggggcgaa aactctcaag gatcttaccg ctgttgagat ccagttcgat 
     9781 gtaacccact cgtgcaccca actgatcttc agcatctttt actttcacca gcgtttctgg 
     9841 gtgagcaaaa acaggaaggc aaaatgccgc aaaaaaggga ataagggcga cacggaaatg 
     9901 ttgaatactc atactcttcc tttttcaata ttattgaagc atttatcagg gttattgtct 
     9961 catgagcgga tacatatttg aatgtattta gaaaaataaa caaatagggg ttccgcgcac 
    10021 atttccccga aaagtgccac ctgacgtcta agaaaccatt attatcatga cattaaccta 
    10081 taaaaatagg cgtatcacga ggccctttcg tctcgcgcgt ttcggtgatg acggtgaaaa 
    10141 cctctgacac atgcagctcc cggagacggt cacagcttgt ctgtaagcgg atgccgggag 
    10201 cagacaagcc cgtcagggcg cgtcagcggg tgttggcggg tgtcggggct ggcttaacta 
    10261 tgcggcatca gagcagattg tactgagagt gcaccatatg cggtgtgaaa taccgcacag 
    10321 atgcgtaagg agaaaatacc gcatcaggcg ccattcgcca ttcaggctgc gcaactgttg 
    10381 ggaagggcga tcggtgcggg cctcttcgct attacgccag ctggcgaaag ggggatgtgc 
    10441 tgcaaggcga ttaagttggg taacgccagg gttttcccag tcacgacgtt gtaaaacgac 
    10501 ggccagtg 
//