A variant form of a group I ribozyme, optimized by
in vitro evolution for its ability to catalyze magnesium-dependent
phosphoester transfer reactions involving DNA substrates, also
catalyzes the cleavage of an unactivated alkyl amide when that
linkage is presented in the context of an oligodeoxynucleotide
analog. Substrates containing an amide bond that joins either
two DNA oligos, or a DNA oligo and a short peptide, are cleaved
in a magnesium-dependent fusion to generate the expected products.
The first order rate constant, kcat' is 0.1 x 10-5
min-1 to 1 x10-5 min-1 for the
DNA flanked substrates, which corresponds to a rate acceleration
of more than 103 as compared with the uncatalyzed
reaction.
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