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Breaker, R.R. & Joyce, G.F.
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"Emergence of a Replicating
Species from an in vitro RNA Evolution Reaction"
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Proc. Natl. Acad. Sci. USA,
91, 6093-6097
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The technique of self-sustained sequence replication
(3SR) allows isothermal amplification of DNA and RNA molecules
in vitro. This method relies on the activities of a reverse
transcriptase and a DNA-dependent RNA polymerase to amplify specific
nucleic acid sequences. We have modified the 3SR protocol to
allow selective amplification of RNAs that catalyze a particular
chemical reaction. During an in vitro RNA evolution experiment
employing this modified system, a unique class of selfish RNAs
emerged and replicated to the exclusion of the intended RNAs.
Members of this new class of selfish molecules, termed "RNA
Z", amplify efficiently despite their inability to catalyze
the target chemical reaction. Their amplification requires the
action of both reverse transcriptase and RNA polymerase and involves
the synthesis of both DNA and RNA replication intermediates.
The proposed amplification mechanism for RNA Z involves the formation
of a DNA hairpin that functions as a template for transcription
by RNA polymerase. This arrangement links the two strands of
the DNA, resulting in the production of RNA transcripts that
contain an embedded RNA polymerase promoter sequence.
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