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The Marletta Laboratory

Publications

2001-Present

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Fernhoff NB, Derbyshire ER, Underbakke ES, Marletta MA.
Heme-assisted S-nitrosation desensitizes ferric soluble guanylate cyclase to nitric oxide.
J Biol Chem. 2012, 287, 43053-62.

Smith BC, Marletta MA.
Mechanisms of S-nitrosothiol formation and selectivity in nitric oxide signaling.
Curr Opin Chem Biol. 2012, 16, 498-506.

Li X, Beeson WT 4th, Phillips CM, Marletta MA, Cate JH.
Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases.
Structure. 2012, 20, 1051-61.

Plate L, Marletta MA.
Nitric oxide modulates bacterial biofilm formation through a multicomponent cyclic-di-GMP signaling network.
Mol. Cell. 2012 46:449-60.

Gunn A, Derbyshire ER, Marletta MA, Britt RD.
Conformationally distinct five-coordinate heme-NO complexes of soluble guanylate cyclase elucidated by multifrequency electron paramagnetic resonance (EPR).
Biochemsitry. 2012, 51, 8384-90.

Surmeli NB, Marletta MA.
Insight into the rescue of oxidized soluble guanylate cyclase by the activator cinaciguat.
Chembiochem. 2012, 13(7):977-81.

Derbyshire ER, Marletta MA.
Structure and regulation of soluble guanylate cyclase.
Annu Rev Biochem. 2012, [Epub ahead of print].

Smith BC, Fernhoff NB, Marletta MA.
Mechanism and kinetics of inducible nitric oxide synthase auto-S-nitrosation and inactivation.
Biochemistry. 2012, 51(5):1028-40.

Beeson WT, Phillips CM, Cate JH, Marletta MA.
Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases.
J Am Chem Soc. 2012, 134(2):890-2.

Phillips CM, Beeson WT, Cate JH,Marletta MA.
Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa.
ACS Chem. Biol. 2011, 6 (12): 1399–1406.

Winter MB, Herzik MA Jr, Kuriyan J,Marletta MA.
Tunnels modulate ligand flux in a heme nitric oxide/oxygen binding (H-NOX) domain
Proc. Natl. Acad. Sci. USA. 2011 108(43): E881-9.

Barglow KT, Knutson CG, Wishnok JS, Tannenbaum SR,Marletta MA.
Site-specific and redox-controlled S-nitrosation of thioredoxin
Proc. Natl. Acad. Sci. USA. 2011 108(35): E600-6.

Phillips CM, Iavarone AT, Marletta MA.
A quantitative proteomic approach for cellulose degradation by Neurospora crassa.
J Proteome Res. 2011 10(9): 4177-85.

Weinert EE, Phillips-Piro CM, Tran R, Mathies RA, Marletta MA.
Controlling Conformational Flexibility of an O2-binding H-NOX Domain.
Biochemistry. 2011 50(32): 6519-30.

Tran R, Weinert EE, Boon EM, Mathies RA, Marletta MA.
Determinants of the Heme-CO Vibrational Modes in the H-NOX Family.
Biochemistry. 2011 50(30): 6519-30.

Derbyshire ER, Winter MB, Ibrahim M, Deng S, Spiro TG, Marletta MA.
Probing domain interactions in soluble guanylate cyclase.
Biochemistry. 2011 50:4281-90.

Beeson WT 4th, Iavarone AT, Hausmann CD, Cate JH, Marletta MA.
Extracellular aldonolactonase from Myceliophthora thermophila.
Appl Environ Microbiol. 2010, 77:650-6.

Marletta MA, Fontecave M.
From metals to radicals to light to loops: regulating complex reactions.
Curr opin Struct Biol. 2010 20:657-8.

Sun J, Phillips CM, Anderson CT, Beeson WT, Marletta MA, Glass NL.
Expression and characterization of the Neurospora crassa endoglucanase GH5-1.
Prot Expr Purif. 2011, 75:147-54.

Olea C, Kuriyan J, Marletta MA.
Modulating heme redox potential through protein-induced porphyrin distortion.
J Am Chem Soc. 2010, 132, 12794-5.

Stoll S, NejatyJahromy Y, Woodward JJ, Ozarowski A, Marletta MA, Britt RD.
Nitric oxide synthase stabilizes the tetrahydrobiopterin cofactor radical by controlling its protonation state.
J Am Chem Soc. 2010, 132, 11812-23.

Carlson HK, Vance RE, Marletta MA.
H-NOX regulation of c-di-GMP metabolism and biofilm formation in Legionella pneumophila.
Mol Microbiol 2010, 77: 930-42.

Yoon J, Herzik MA Jr., Winter MB, Tran R, Olea C Jr., Marletta MA.
Structure and properties of a bis-histidyl ligated globin from Caenorhabditis elegans.
Biochemistry 2010, 49, 5662-70.

Ibrahim M, Derbyshire ER, Soldatova AV, Marletta MA, Spiro TG.
Soluble guanylate cyclase is activated differently by excess NO and by YC-1: Resonance Raman spectroscopic evidence.
Biochemistry 2010, 49, 4864-71.

Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG.
H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri.
Proc Natl Acad Sci USA. 2010, 107, 8375-80.

Winter MB, McLaurin EJ, Reece SY, Olea C, Nocera DG, Marletta MA.
Ru-porphyrin protein scaffolds for sensing O2.
J Am Chem Soc. 2010, 132, 5582-83.

Ibrahim M, Derbyshire ER, Marletta MA, Spiro TG.
Probing soluble guanylate cyclase activation by CO and YC-1 using resonance raman spectroscopy.
Biochemistry. 2010, 49, 3815-23.

Woodward JJ, Nejatyjahromy Y, Britt RD, Marletta MA.
Pterin-centered radical as a mechanistic probe of the second step of nitric oxide synthase.
J Am Chem Soc. 2010, 132, 5105-13.

Derbyshire ER, Deng S, Marletta MA.
Incorporation of tyrosine and glutamine residues into the soluble guanylate cyclase heme distal pocket alters NO and O2 binding.
J Biol Chem. 2010, 285, 17471-8.

Olea C Jr, Herzik MA Jr, Kuriyan J, Marletta MA.
Structural insights into the molecular mechanism of H-NOX activation.
Protein Sci. 2010, 19, 881-7.

Tian C, Beeson WT, Iavarone AT, Sun J, Marletta MA, Cate JH, Glass NL.
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa.
Proc Natl Acad Sci USA. 2009, 106, 22157-62.

Weinert EE, Plate L, Whited CA, Olea C Jr, Marletta MA.
Determinants of ligand affinity and heme reactivity in H-NOX domains.
Angew Chem Int Ed Engl. 2010, 49, 720-23.

Fernhoff NB, Derbyshire ER, Marletta MA.
A nitric oxide/cysteine interaction mediates the activation of soluble guanylate cyclase.
Proc Natl Acad Sci USA. 2009, 106, 21602-7.

Erbil WK, Price MS, Wemmer DE, Marletta MA.
A structural basis for H-NOX signaling in Shewanella oneidensis by trapping a histidine kinase inhibitory conformation.
Proc Natl Acad Sci USA. 2009, 106, 19753-60.

Carlson HK, Plate L, Price MS, Allen JJ, Shokat KM, Marletta MA.
Use of a semisynthetic epitope to probe histidine kinase activity and regulation.
Anal Biochem. 2010, 397, 139-43.

Agapie T, Suseno S, Woodward JJ, Stoll S, Britt RD, Marletta MA.
NO formation by a catalytically self-sufficient bacterial nitric oxide synthase from Sorangium cellulosum.
Proc Natl Acad Sci USA. 2009, 106, 16221-6.

Tran R, Boon EM, Marletta MA, Mathies RA.
Resonance raman spectra of an O2-binding H-NOX domain reveal heme relaxation upon mutation.
Biochemistry, 2009, 48, 8568-77.

Niles JC, Derisi JL, Marletta MA.
Inhibiting Plasmodium falciparum growth and heme detoxification pathway using heme-binding DNA aptamers.
Proc Natl Acad Sci USA. 2009, 106, 13266-71.

Derbyshire ER, Fernhoff NB, Deng S, Marletta MA.
Nucleotide regulation of soluble guanylate cyclase substrate specificity.
Biochemistry. 2009, 48, 7519-24.

Reece SY, Woodward JJ, Marletta MA.
Synthesis of nitric oxide by the NOS-like protein from Deinococcus radiodurans: a direct role for tetrahydrofolate.
Biochemistry. 2009, 48, 5483-91.

Zimmer M, Gray JM, Pokala N, Chang AJ, Karow DS, Marletta MA, Hudson ML, Morton DB, Chronis N, Bargmann CI.
Neurons detect increases and decreases in oxygen levels using distinct guanylate cyclases.
Neuron. 2009, 61, 865-879.

Martin NI, Woodward JJ, Winter MB, Marletta MA.
4,4-Difluorinated analogues of l-arginine and N(G)-hydroxy-l-arginine as mechanistic probes for nitric oxide synthase.
Bioorg Med Chem Lett. 2009, 19, 1758-62.

Woodward JJ, Chang MM, Martin NI, Marletta MA.
The second step of the nitric oxide synthase reaction: evidence for ferric-peroxo as the active oxidant.
J Am Chem Soc. 2009, 131, 297-305.

Derbyshire ER, Marletta MA..
Biochemistry of soluble guanylate cyclase.
Handb Exp Pharmacol. 2009, 191, 17-31.

Marletta MA, Stubbe J.
Catalysis and regulation. Editorial overview.
Curr Opin Struct Biol. 2008, 18, 641-643.

Winger, JW; Derbyshire, ER; Lamers, MH; Marletta, MA; Kuriyan, J.
The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase.
BMC Struct. Biol. 2008, 8, 42

Olea, C; Boon, EM; Pellicena, P; Kuriyan, J; Marletta, MA.
Probing the function of heme distortion in the H-NOX family.
ACS Chem. Biol. 2008, 3, 703-710

Chao, LY; Rine, J; Marletta, MA.
Spectroscopic and kinetic studies of Nor1, a cytochrome P450 nitric oxide reductase from the fungal pathogen Histoplasma capsulatum
Arch. Biochem. Biophys . 2008, 480, 132-137

Chang, HH.; Falick, AM.; Carlton, PM.; Sedat, JW.; DeRisi, JL.; Marletta, MA.
N-terminal processing of proteins exported by malaria parasites.
Mol. Biochem. Parasitol. 2008, 160, 107-15.

Chao, LY.; Marletta, MA.; Rine, J.
Sre1, an iron-modulated GATA DNA-binding protein of iron-uptake genes in the fungal pathogen Histoplasma capsulatum.
Biochemistry 2008, 47, 7274-83.

Derbyshire, ER; Gunn, A; Ibrahim, M; Spiro, TG.; Britt, RD; Marletta, MA.
Characterization of two different five-coordinate soluble guanylate cyclase ferrous-nitrosyl complexes.
Biochemistry 2008, 47, 3892-9.

Martin, NI; Beeson, WT; Woodward, JJ; Marletta, MA.
NG-Aminoguanidines from primary amines and the preparation of nitric oxide synthase inhibitors.
J. Med. Chem. 2008, 51, 924-31.

Mitchell, DA.; Michel, T; Marletta, MA.
Effects of S-nitrosation of nitric oxide synthase.
Adv. Exp. Biol. 2007, 1, 151-79.

Derbyshire, ER; Marletta, MA.
Butyl isocyanide as a probe of the activation mechanism of soluble guanylate cyclase: investigating the role of non-heme nitric oxide.
J. Biol. Chem. 2007, 282, 35741-8.

Huang, SH; Rio, DC; Marletta, MA.
Ligand binding and inhibition of an oxygen-sensitive soluble guanylate cyclase, Gyc-88E, from Drosophila.
Biochemistry 2007, 46, 15115-22.

Price, MS; Chao, LY; Marletta, MA.
Shewanella oneidensis MR-1 H-NOX regulation of a histidine kinase by nitric oxide.
Biochemistry 2007, 46, 13677-83.

Martin, NI; Woodward, JJ; Winter, MB; Beeson, WT; Marletta, MA.
Design and synthesis of C5 methylated L-Arginine analogues as active site probes for nitric oxide synthase.
J. Am. Chem. Soc. 2007, 129, 12563-70.

Martin, NI; Derbyshire, ER; Marletta, MA.
Synthesis and evaluation of a phosphonate analogue of the soluble guanylate cyclase activator YC-1.
Bioorg. Med. Chem. Let. 2007, 17, 4938-41.

Mitchell, DA; Morton, SU; Fernhoff, NB; Marletta, MA.
Thioredoxin is required for S-nitrosation of procaspase-3 and the inhibition of apoptosis in Jurkat cells.
Proc. Nat. Acad. Sci. USA 2007, 104, 11609-14.

Marletta, MA.
Journal Club: How enzymes tame oxygen reactivity.
Nature 2007, 448, 109.

Winger, JA; Derbyshire, ER; Marletta, MA.
Dissociation of nitric oxide from soluble guanylate cyclase and heme-nitric oxide/oxygen binding domain constructs.
J. Biol. Chem. 2007, 282, 897-907.

Woodward, JJ; Martin, NI; Marletta, MA.
An Escherichia coli expression-based method for heme substitution.
Nat Methods. 2007, 4, 43-5

Mitchell, DA; Morton, SU; Marletta, MA.
Design and characterization of an active site selective caspase-3 transnitrosating agent.
ACS Chem Biol. 2006, 1, 659-65.

Niles, JC; Marletta, MA.
Utilizing RNA aptamers to probe a physiologically important heme-regulated cellular network.
ACS Chem Biol. 2006, 1, 515-24.

Martin, NI; Woodward, JJ; Marletta, MA.
NG-hydroxyguanidines from primary amines.
Org Lett. 2006, 8, 4035-8.

Boon, EM; Davis, JH; Tran, R; Karow, DS; Huang, SH; Pan, D; Miazgowicz, MM; Mathies, RA; Marletta, MA.
Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase beta1 H-NOX domain.
J Biol Chem. 2006, 281, 21892-902.

Boon, EM.; Marletta, MA.
Sensitive and selective detection of nitric oxide using an H-NOX domain.
J. Am. Chem. Soc. 2006, 128, 10022-3.

Cary, SP; Winger, JA; Derbyshire, ER; Marletta, MA.
Nitric oxide signaling: no longer simply on or off.
Trends Biochem. Sci. 2006, 31, 231-9.

Hering, KW; Artz, JD; Pearson, WH; Marletta, MA.
The design and synthesis of YC-1 analogues as probes for soluble guanylate cyclase.
Bioorg Med Chem Lett. 2006, 16, 618-21.

Karow, DS; Pan, D; Davis, JH; Behrends, S; Mathies, RA; Marletta, MA.
Characterization of functional heme domains from soluble guanylate cyclase.
Biochemistry. 2005, 44, 16266-74.

Derbyshire, ER; Tran, R; Mathies, RA; Marletta, MA.
Characterization of nitrosoalkane binding and activation of soluble guanylate cyclase.
Biochemistry. 2005, 44, 16257-65.

Mitchell, DA; Marletta, MA.
Thioredoxin catalyzes the S-nitrosation of the caspase-3 active site cysteine.
Nat Chem Biol. 2005, 1, 154-8

Erwin, PA; Mitchell, DA; Sartoretto, J; Marletta, MA; Michel, T.
Subcellular targeting and differential S-nitrosylation of endothelial nitric oxide synthase.
J Biol Chem. 2005, 281, 151-7.

Mills, SA; Marletta, MA.
Metal binding characteristics and role of iron oxidation in the ferric uptake regulator from Escherichia coli.
Biochemistry. 2005, 44, 13553-9.

Boon, EM; Marletta, MA.
Ligand discrimination in soluble guanylate cyclase and the H-NOX family of heme sensor proteins.
Curr Opin Chem Biol. 2005, 9, 441-6.

Boon, EM; Huang, SH; Marletta, MA.
A molecular basis for NO selectivity in soluble guanylate cyclase.
Nat Chem Biol. 2005, 1, 53-9

Cary, SP; Winger, JA; Marletta, MA.
Tonic and acute nitric oxide signaling through soluble guanylate cyclase is mediated by nonheme nitric oxide, ATP, and GTP.
Proc Natl Acad Sci U S A. 2005, 102,13064-9.

Luzzi, SD; Marletta, MA.
L-arginine analogs as alternate substrates for nitric oxide synthase.
Bioorg Med Chem Lett. 2005, 15, 3934-41.

Udit, AK; Belliston-Bittner, W; Glazer, EC; Nguyen, YH; Gillan, JM; Hill, MG; Marletta, MA; Goodin, DB; Gray, HB.
Redox couples of inducible nitric oxide synthase.
J Am Chem Soc. 2005;127,11212-3.

Gribovskaja, I; Brownlow, KC; Dennis, SJ; Rosko, AJ; Marletta, MA; Stevens-Truss, R.
Calcium-binding sites of calmodulin and electron transfer by inducible nitric oxide synthase.
Biochemistry. 2005, 44, 7593-601.

Boon, EM; Marletta, MA.
Ligand specificity of H-NOX domains: from sGC to bacterial NO sensors.
J Inorg Biochem. 2005, 99, 892-902.

Mitchell, DA; Erwin, PA; Michel, T; Marletta, MA.
S-Nitrosation and regulation of inducible nitric oxide synthase.
Biochemistry. 2005, 44, 4636-47.

Winger, JA; Marletta, MA.
Expression and characterization of the catalytic domains of soluble guanylate cyclase: interaction with the heme domain.
Biochemistry. 2005, 44, 4083-90.

Schneider, EL; King, DS; Marletta, MA.
Amino acid substitution and modification resulting from Escherichia coli expression of recombinant Plasmodium falciparum histidine-rich protein II.
Biochemistry. 2005, 44, 987-95.

Schneider, EL; Marletta, MA.
Heme binding to the histidine-rich protein II from Plasmodium falciparum.
Biochemistry. 2005, 44, 979-86.

Pellicena, P; Karow, DS; Boon, EM; Marletta, MA; Kuriyan, J.
Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases.
Proc Natl Acad Sci U S A. 2004, 101, 12854-9.

Karow, DS; Pan, D; Tran, R; Pellicena, P; Presley, A; Mathies, RA; Marletta, MA.
Spectroscopic characterization of the soluble guanylate cyclase-like heme domains from Vibrio cholerae and Thermoanaerobacter tengcongensis.
Biochemistry. 2004, 43, 10203-11.

Gray, JM; Karow, DS; Lu, H; Chang, AJ; Chang, JS; Ellis, RE; Marletta, MA; Bargmann, CI.
Oxygen sensation and social feeding mediated by a C. elegans guanylate cyclase homologue.
Nature. 2004, 430, 317-22.

Miller, BH; Fratti, RA; Poschet, JF; Timmins, GS; Master, SS; Burgos, M; Marletta, MA; Deretic, V.
Mycobacteria inhibit nitric oxide synthase recruitment to phagosomes during macrophage infection.
Infect Immun. 2004, 72, 2872-8.

Zhao, X; Miller, JR; Jiang, Y; Marletta, MA; Cronan, JE.
Assembly of the covalent linkage between lipoic acid and its cognate enzymes.
Chem Biol. 2003,10, 1293-302.

Hurshman, AR; Krebs, C; Edmondson, DE; Marletta, MA.
Ability of tetrahydrobiopterin analogues to support catalysis by inducible nitric oxide synthase: formation of a pterin radical is required for enzyme activity.
Biochemistry. 2003,42, 13287-303.

Spiering, MM; Ringe, D; Murphy, JR; Marletta, MA.
Metal stoichiometry and functional studies of the diphtheria toxin repressor.
Proc. Natl. Acad. Sci. USA 2003, 100, 3808-13.

Ballou, DP; Zhao, Y; Brandish, PE; Marletta, MA.
Revisiting the kinetics of nitric oxide (NO) binding to soluble guanylate cyclase: the simple NO-binding model is incorrect.
Proc. Natl. Acad. Sci. USA 2002, 99, 12097-101.

Choi, CY; Schneider, EL; Kim, JM; Gluzman, IY; Goldberg, DE; Ellman, JA; Marletta, MA.
Interference with heme binding to histidine-rich protein-2 as an antimalarial strategy.
Chem. Biol. 2002, 9, 881-9.

Artz, JD; Schmidt, B; McCracken, JL; Marletta, MA.
Effects of nitroglycerin on soluble guanylate cyclase: implications for nitrate tolerance.
J. Biol. Chem. 2002, 277, 18253-6.

Hurshman, AR; Marletta, MA.
Reactions catalyzed by the heme domain of inducible nitric oxide synthase: evidence for the involvement of tetrahydrobiopterin in electron transfer.
Biochemistry 2002, 41, 3439-56.