Resources
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Dharia et al. (2009) Use of high-density tiling microarrays to globally identify
mutations and elucidate mechanisms of drug resistance in Plasmodium falciparum. Genome Biology, 10:R21.
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Zhou et al. (2008) Evidence-based annotation of the malaria
parasite's genome using comparative expression profiling. PLoS ONE, 3(2):e1570.
P. falciparum and P. yoelii OPI Database
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Young et al. (2008) In silico discovery of
transcription regulator elements in Plasmodium falciparum. BMC Genomics, 9(1):70.
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Daily et al. (2007) Distinct physiological states of
Plasmodium falciparum in malaria-infected patients. Nature, 450(7172):1091-5.
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Zhou et al. (2007) Large-scale annotation of
small-molecule libraries using public databases. J Chem Inf Model, 47(4):1386-94.
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Kidgell et al. (2006) A systematic map of genetic variation
in Plasmodium falciparum. PLoS Pathog, 2(6):e57.
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Young et al. (2005) The Plasmodium falciparum
sexual development transcriptome: A microarray analysis using ontology-based pattern identification.
Mol Biochem Parasitol, 143(1):67-79.
P. falciparum Gametocyte and Asexual Stages OPI Database
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Zhou et al. (2005) In silico gene function prediction using
ontology-based pattern identification. Bioinformatics, 21(7):1237-45.
P. falciparum Asexual Stages OPI Database
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Le Roch et al. (2003) Discovery of gene function by expression
profiling of the malaria parasite lifecycle. Science, 301(5639):1503-8
Note: The scrMalaria array (part number 510687) used in the above studies was developed as part of a
collaboration between The Scripps Research Institute and The Genomics Institute of the Novartis Research Foundation.
These arrays can be purchased from Affymetrix. These arrays are not commercial products and require specialized
software and files, which can be downloaded from this site.
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Le Roch et al. (2002) Monitoring the
chromosome 2 interythrocytic transcriptome of Plasmodium falciparum using oligonucleotide arrays.
The American Journal of Tropical Medicine and Hygiene, 67(3):233-243
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Winzeler et al. (2003) Genetic diversity in yeast assessed with
whole-genome oligonucleotide arrays. Genetics, 163(1):79-89.
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