Results were obtained by sequencing both strands of a PCR product or, for chromosome 14, as described in Steinmetz LM, Sinha H, Richards DR, Spiegelman JI, Oefner PJ, McCusker JH, Davis RW. Dissecting the architecture of a quantitative trait locus in yeast. Nature. 2002 Apr 21;416(6878):326-30. Chromosome 14 were derived from the complete sequence of a 30 kb region while the results from other chromosomes were the results of amplfiying speciific 500 base pair regions. All incorrect calls were due to false negatives.
|
Chromosome Number |
Correct calls |
Probe Sequence |
Strain |
Polymorphism position |
||||
|---|---|---|---|---|---|---|---|---|
|
9 |
3/3 |
GACGGCTTATGCAGAACTGGTTCAG GACGGCTTATGCAGAACTGGTTCAG GACGATTTATGCAGAACTGGTTCAG GACGGTTTATGCAGGACTGGTTCAG GACGGTTTATGCAGAACTGGTTCAG |
Probe X2180 W303 Y102 SK1 |
6 |
||||
|
5 |
3/3 |
GAAATTTATGGCTCCATGCCGTTG GAAATTTATGGCTCCATGCCGTTG GAAATTTATGGCTCTATGCCGTTG GAAATTTATGGCTCTATGCCGTTG GANATTTATGGGCTCTATGCCGTTG |
Probe X2180 W303 Y102 SK1 |
10 |
||||
|
13 |
0/0 |
GGCAAAGTTAGTGACAAAGAATAAG n.d. n.d. n.d. n.d. |
Probe X2180 W303 Y102 SK1 |
|
||||
|
4 |
1/3 |
GCAGGTGTTAATTCCGAATTGAAAT GCAGGTGTTAATTCCGAATTGAAAT GCAGGTCTTAATTCCGAATTGAATT GCAGGTCTTAATTCCGAATTGAATT GCAGGTCTTAATTCCGAATTGAATT |
Probe X2180 W303 Y102 SK1 |
7 |
||||
|
11 |
2/2 |
ATGATCCGCATGTCGAAAGAAGTAA ATGATCCGCATGTCGAAAGAAGTAA ATGATCCGCATGTCAAAAGAAGTAA ATGATCCGCATGTCAAAAGAAGTAA n.d. |
Probe X2180 W303 Y102 SK1 |
11 |
||||
|
11 |
2/3 |
TCTCCATGAGGTGATATGTTGAGTT TCTCCATGAGGTGATATGTTGAGTT ACTCCGTGAGGTGATATGTTGAGTT TCTCCGTGAGGTGATATGTTGAGTT TCTCCGTGAGGTGATATGTTGAGTT |
Probe X2180 W303 Y102 SK1 |
6 |
||||
|
7 |
3/3 |
CGAGCTATACGTTTTGTGCTCACCG CGAGCTATACGTTTTGTGCTCACCG CGAGCTACACGTTTTGTGCCCACCG CGAGCTACACGTTTTGTGCCCACCG CGAGCTACACGTTTTGTGCTCACCG |
Probe X2180 W303 Y102 SK1 |
8 |
||||
|
13 |
1/2 |
ACATTCTGCTACACCAAAAATGGAA n.d. ACATTCTGCTATACCAAAAAAGGAA ACATTCTGCTATACCAAAAAAGGAA ATATTCTTTTNGNCCGAAAACGGAA |
Probe X2180 W303 Y102 SK1 |
12 |
||||
|
8 |
3/3 |
TCGTAGGTCACTGCTATATTTGATG TCGTAGGTCACTGCTATATTTGATG TCGTAAGTCACTGCTATATTTGATG TCGTAAGTCACTGCTATATTTGATG TCGTAAGTCACTGCTATATTTGATG |
Probe X2180 W303 Y102 SK1 |
6 |
||||
|
12 |
3/3 |
CTGGGGGTTTGTATAGCGTTCACAG CTGGGGGTTTGTATAGCGTTCACAG CTGGGGCTTTGTATAGCGTTCACAG CTGGGGCTTTGTATAGCGTTCACAG CTGGGGCTTTGTATAGCGTTCACAG |
Probe X2180 W303 Y102 SK1 |
7 |
||||
|
15 |
0/0 |
CACTTCTGGGGTTTCTCACCAATAA n.d. n.d. n.d. n.d. |
Probe X2180 W303 Y102 SK1 |
|
||||
|
10 |
3/3 |
ATGAGCGACGGTGATATGCCTGACT ATGAGCGACGGTGATATGCCTGACT ATGAGCGACGGTGATATGTCTGACT ATGAGCGACGGTGATATTTCTGACT ATGAGCGACGGTGATATTTCTGACT |
Probe X2180 W303 Y102 SK1 |
7 |
||||
|
13 |
2/3 |
ACAACAATGTTAGTACGAGAGACTT ACAACAATGTTAGTACGAGAGACTT ACAACAATGTTAATACGAGAGACTT ACAACAATGTTAATACGAGAGACTT ACAACAATGATGATACNAGAGACTT |
Probe X2180 W303 Y102 SK1 |
13 |
||||
|
14 |
3/3 |
TCATGTTCGGAGGATAACGTATTAG TCATGTTCGGAGGAGTACGTATTAG TCATGATCGGAGGAGTAACGTATTAG TCATGATCGGAGGATAACGTATTAG TCATGATCGGAGGAT-ACGTATTAG |
Probe X2180 W303 Y102 SK1 |
6 |
||||
|
4 |
3/3 |
CCAGGGCTGCCTTCGAGATTAGAGA CCAGGGCTGCCTTCGAGATTAGAGA CCAGGACTGCCTTCCAGATTAGAGA CCAGGACTGCCTTCCAGATTAGAGA CCAGGACTGCCTTCCAGATTAGAGA |
Probe X2180 W303 Y102 SK1 |
6 |
||||
|
7 |
3/3 |
AATTATCAAGATTCACCTAACATTC AATTATCAAGATTCACCTAACATTC AATTATCAAGATTCACCTAATATTC AATTATCAAGATTCATCTAATATTT AATTATCAAGATTCATCTAATATTT |
Probe X2180 W303 Y102 SK1 |
5 |
||||
|
10 |
1/1 |
AATCAGTTCATTGCAGTGGTATCCG AATCAGTTCATTGCAGTGGTATCCG n.d. n.d. AGTCAGTTCACTGCAGTAGTATCCG |
Probe X2180 W303 Y102 SK1 |
|
||||
|
2 |
3/3 |
ATTTTTCCAGTTAGGTACCATGTGG ATTTTTCCAGTTAGGTACCATGTGG ATTTTTCAAGTTAGGTACCATGTGG ATTTTTCCAGTTAGGTACCATGTGG ATTTTTCCAGTTAGGTACCATGTGG |
Probe X2180 W303 Y102 SK1 |
8 |
||||
|
16 |
0/0 |
TATACGATAACATGCAAATAGTACG n.d. n.d. n.d. n.d. |
Probe X2180 W303 Y102 SK1 |
|
||||
|
12 |
3/3 |
TCAACTTTAATGGATGAGTAGATTT TCAACTTTAATGGATGAGTAGATTT TCAACTTTAATAGATGAGTAGATTT TCAACTTTAATAGATGAGTAGATTT TCAACTTTAATAGATGAGTAGATTT |
Probe X2180 W303 Y102 SK1 |
12 |
||||
|
7 |
2/3 |
TTCTCTTCGGTTGCCAGCTTATCCT TTCTCTTCGGTTGCCAGCTTATCCT TTCTCTTCGGCTGCCAGCTTATCCT TTCTCTTCGGCTGCCAGCTTATCCT TTCTCTTCGGCTGCCAGCTTATCCT |
Probe X2180 W303 Y102 SK1 |
11 |
||||
|
14 |
3/3 |
CGAATTACAACAACGGCCCATGCAA CGAATTACAACAACGGCCGATGCAA CGAATTACAACAACGGCCGATGCAA CGAATTACAACAACGGCCGATGCAA |
S96 SK1 W303 YJM789 |
7 |
||||
|
14 |
3/3 |
AGCTACAAGAACCAGTTTGCTTATG AGCTACAAGAACTAGTTTGCTTATG AGCTACAAGAACCAGTTTGCTTATG AGCTACAAGAACCAGTTTGCTTATG |
S96 SK1 W303 YJM789 |
13 |
||||
|
14 |
3/3 |
TGTAGGAGGTTGAGAGGACCGTAAA TGTAGGAGGTTGAGAAGACCGTAAA TGTAGGAGGTTGAGAGGACCGTAAA TGTAGGAGGTTGAGAGGACCGTAAA |
S96 SK1 W303 YJM789 |
10 |
||||
|
14 |
3/3 |
ACTGCTATCGGAACTCGAGTTCTGC ACTGCTATCGGAACTCGAGTTCTGC ACTGCTATCGGAACTCGAGTTCTGC ACTGTTATCGGAACTCGAGTTCTGC |
S96 SK1 W303 YJM789 |
5 |
||||
|
14 |
3/3 |
CACGTTACTGCCACTGCTATCGGAA CACGTTACTGCCACTGCTATCGGAA CACGTTACTGCCACTGCTATCGGAA CACGTTACTGCCACTGTTATCGGAA |
S96 SK1 W303 YJM789 |
9 |
||||
|
14 |
3/3 |
TTCCATTCCAACTGATTATCGCGTA TTCCATTCCAACTGATTGTCGCGTA TTCCATTCCAACTGATTGTCGCGTA TTCCATTCCAACTGATTGTCGCGTA |
S96 SK1 W303 YJM789 |
8 |
||||
|
3/3 |
TCCAACTGATTATCGCGTACGCCTT TCCAACTGATTGTCGCGTACGCCTT TCCAACTGATTGTCGCGTACGCCTT TCCAACTGATTATCGCGTACGCCTT |
S96 SK1 W303 YJM789 |
12 |
|||||