Welcome to the Case group home page!

This page is designed to provide a starting point for information about work in computational chemistry taking place in Dave Case's group. We work on computational aspects of biomolecular NMR, on electrostatic interactions in proteins and nucleic acids, and on electronic structure aspects of metalloenzymes. 

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David A. Case                     |  e-mail:      case@scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  WWW:                         
La Jolla CA 92037  USA            |    http://www.scripps.edu/case
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Map of the TSRI campus
Area Freeway Map

  Recent software updates:
Amber Suite of biomolecular simulation codes. (Latest update is version 10, April, 2008)
RNAMotif sequence analysis code, for finding structural motifs in nucleic acid sequences. (Latest update is version 3.0.4, January, 2005)
NAB (Nucleic Acid Builder) provides a programming environment for geometric and force-field manipulations of nucleic acids (and proteins as well). NAB is now a part of AmberTools; latest update is version 1.0, April, 2008.
SHIFTS predicts nitrogen, carbon and proton chemical shifts in proteins, proton shifts in nucleic acids. (Latest update is version 4.2, January, 2007)
UCSF DOCK Finds good binding positions for small molecules in protein or nucleic acid receptors; includes a variety of scoring protocols, including those using the Amber/GB solvation model. (Latest update is version 6.2, March, 2008)

TSRI's yellowtail and redfish clusters TSRI's bluefish cluster



Updated on May 20, 2008. Comments to case@scripps.edu