General
- CIMBIO - Center for Integrative Molecular Biosciences
The Center for Integrative Molecular Biosciences (CIMBio) at TSRI is a new collaborative effort whose mission is to foster multidisciplinary studies of molecular machines, with the aim of determining their structure, their mechanism of action, and their d
- The Scripps Research Institute
The Scripps Research Institute is the largest, private, non-profit research organization in the U.S. It has attained recognition as a center of excellence in a highly focused branch of research, the nexus of the structure of biological molecules and their
Image Processing and Data Analysis Software
- Situs Program Package
Situs is an award-winning program package for the modeling of atomic resolution structures into low-resolution density maps e.g. from electron microscopy or small angle X-ray scattering . The software supports both rigid-body and flexible docking using a
- SPIDER
SPIDER: (System for Processing Image Data from Electron microscopy and Related fields) is a large image processing system for electron microscopy, developed over the last 23 years.
- The O Files
Official WWW server for users of the O protein crystallographic package.
- Xmipp Homepage
"X-Windows-based Microscopy Image Processing Package", is a specialized suite of image processing programs primarily aimed at obtaining the three-dimensional reconstruction of biological specimens from large sets of projection images acquired by
Figure Making
- MolScript: The Official Web Site
MolScript is a program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations.
- Raster3D (Photorealistic Molecular Graphics)
Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficien
- The Official BobScript Home Page
Robert Esnouf's extensions to MolScript version 1.4
- Uppsala Software Factory
Software and Resources for Macromolecular Crystallography and Structural Biology.



